Wall clock time and date at job start Tue Mar 31 2020 10:32:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21338 * 120.00128 * 2 1 4 4 C 1.46447 * 120.00163 * 179.97438 * 2 1 3 5 5 C 1.37977 * 125.93075 * 179.97438 * 4 2 1 6 6 C 1.39943 * 106.73538 * 179.97438 * 5 4 2 7 7 C 1.36659 * 107.02443 * 359.97438 * 6 5 4 8 8 C 1.47275 * 125.66310 * 179.73381 * 7 6 5 9 9 O 1.21516 * 120.00270 * 0.02562 * 8 7 6 10 10 O 1.34806 * 119.99725 * 179.97438 * 8 7 6 11 11 C 1.45197 * 116.99689 * 180.02562 * 10 8 7 12 12 C 1.50703 * 109.46886 * 180.02562 * 11 10 8 13 13 C 1.38640 * 119.74679 * 269.73350 * 12 11 10 14 14 C 1.37619 * 120.24272 * 179.72128 * 13 12 11 15 15 C 1.40709 * 119.75053 * 0.56907 * 14 13 12 16 16 C 1.41397 * 120.25162 * 179.68340 * 15 14 13 17 17 H 1.07997 * 120.00266 * 204.40932 * 16 15 14 18 18 C 1.39945 * 119.99610 * 24.40076 * 16 15 14 19 19 N 1.30822 * 119.99997 * 17.85354 * 18 16 15 20 20 Si 1.86800 * 120.00124 * 197.84838 * 18 16 15 21 21 H 1.48507 * 109.46940 * 90.00075 * 20 18 16 22 22 H 1.48496 * 109.47418 * 210.00046 * 20 18 16 23 23 H 1.48500 * 109.46849 * 330.00645 * 20 18 16 24 24 C 1.40717 * 119.50846 * 359.70010 * 15 14 13 25 25 C 1.37621 * 119.74726 * 0.02562 * 24 15 14 26 26 O 1.34476 * 108.66730 * 0.02562 * 7 6 5 27 27 H 1.09003 * 109.47094 * 240.00272 * 1 2 3 28 28 H 1.09000 * 109.47157 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.46850 * 120.00005 * 1 2 3 30 30 H 1.07999 * 126.63108 * 359.92819 * 5 4 2 31 31 H 1.08004 * 126.48646 * 179.97438 * 6 5 4 32 32 H 1.08996 * 109.47725 * 300.00277 * 11 10 8 33 33 H 1.08997 * 109.47234 * 60.01041 * 11 10 8 34 34 H 1.08002 * 119.87989 * 359.97209 * 13 12 11 35 35 H 1.08011 * 120.12473 * 180.27389 * 14 13 12 36 36 H 0.96999 * 120.00067 * 179.97438 * 19 18 16 37 37 H 1.08002 * 120.12735 * 179.97438 * 24 15 14 38 38 H 1.07998 * 119.87540 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1137 1.0508 0.0000 4 6 2.2393 -1.2683 0.0006 5 6 3.6117 -1.4108 0.0001 6 6 3.8741 -2.7854 0.0016 7 6 2.6656 -3.4234 0.0034 8 6 2.4648 -4.8824 -0.0003 9 8 3.4245 -5.6278 -0.0049 10 8 1.2164 -5.3910 0.0026 11 6 1.0941 -6.8378 -0.0007 12 6 -0.3640 -7.2186 0.0025 13 6 -1.0247 -7.4009 1.2077 14 6 -2.3576 -7.7431 1.2226 15 6 -3.0468 -7.9197 0.0086 16 6 -4.4146 -8.2779 0.0115 17 1 -4.8415 -8.7864 -0.8402 18 6 -5.2152 -7.9734 1.1183 19 7 -4.8214 -7.0739 1.9827 20 14 -6.8461 -8.8513 1.3611 21 1 -6.6316 -10.0800 2.1672 22 1 -7.7913 -7.9524 2.0708 23 1 -7.4117 -9.2196 0.0383 24 6 -2.3645 -7.7375 -1.2086 25 6 -1.0330 -7.3898 -1.1996 26 8 1.6901 -2.4977 0.0025 27 1 -0.3633 -0.5138 0.8900 28 1 -0.3633 1.0277 -0.0005 29 1 -0.3633 -0.5138 -0.8900 30 1 4.3422 -0.6153 -0.0018 31 1 4.8474 -3.2534 0.0013 32 1 1.5725 -7.2409 -0.8932 33 1 1.5783 -7.2454 0.8867 34 1 -0.4925 -7.2699 2.1382 35 1 -2.8716 -7.8803 2.1626 36 1 -5.3765 -6.8626 2.7497 37 1 -2.8836 -7.8709 -2.1462 38 1 -0.5072 -7.2499 -2.1325 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000773683357.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:32:07 Heat of formation + Delta-G solvation = -89.715707 kcal Electronic energy + Delta-G solvation = -24102.899808 eV Core-core repulsion = 20263.160924 eV Total energy + Delta-G solvation = -3839.738885 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 314.103 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.04649 -40.12073 -39.44137 -37.75546 -36.31644 -33.94128 -33.50372 -31.66137 -30.88830 -29.69697 -29.41629 -27.36784 -25.14539 -23.68890 -22.36056 -21.25365 -21.13988 -20.28203 -20.13060 -18.49070 -17.44754 -17.22101 -17.02489 -16.63561 -15.94478 -15.41716 -15.28708 -14.89358 -14.60849 -14.00532 -13.79329 -13.78950 -13.63411 -13.38796 -12.96037 -12.57698 -12.54352 -12.50205 -12.47570 -12.08480 -11.79787 -11.24591 -11.08425 -11.05071 -10.74161 -10.50948 -10.47815 -10.45401 -10.31576 -9.77319 -9.52302 -9.28473 -9.15706 -7.62435 -7.51607 -6.91894 -4.52062 0.06704 1.33294 1.94356 2.38770 2.42359 2.73488 2.87771 2.96020 3.00071 3.02685 3.22095 3.65378 3.81695 4.40505 4.41717 4.62865 4.81002 5.06227 5.11487 5.17041 5.17558 5.42009 5.51137 5.55419 5.59097 5.72782 5.80764 5.95420 6.18132 6.25505 6.32533 6.49907 6.82095 6.92374 6.96656 7.12378 7.20765 7.46087 7.64978 7.73990 7.90577 7.94651 8.13737 8.48586 8.73122 8.81106 10.01647 Molecular weight = 314.10amu Principal moments of inertia in cm(-1) A = 0.015242 B = 0.002835 C = 0.002491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1836.593796 B = 9875.551303 C =11238.519549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.441 3.559 3 O -0.437 6.437 4 C -0.077 4.077 5 C -0.135 4.135 6 C -0.136 4.136 7 C -0.008 4.008 8 C 0.541 3.459 9 O -0.489 6.489 10 O -0.335 6.335 11 C 0.135 3.865 12 C -0.240 4.240 13 C -0.074 4.074 14 C -0.171 4.171 15 C 0.119 3.881 16 C -0.454 4.454 17 H 0.081 0.919 18 C 0.075 3.925 19 N -0.783 5.783 20 Si 0.911 3.089 21 H -0.266 1.266 22 H -0.277 1.277 23 H -0.261 1.261 24 C -0.230 4.230 25 C -0.061 4.061 26 O -0.122 6.122 27 H 0.103 0.897 28 H 0.091 0.909 29 H 0.102 0.898 30 H 0.170 0.830 31 H 0.172 0.828 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.089 0.911 35 H 0.120 0.880 36 H 0.283 0.717 37 H 0.095 0.905 38 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.701 9.008 -1.425 13.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C 0.319 3.681 3 O -0.312 6.312 4 C -0.129 4.129 5 C -0.154 4.154 6 C -0.156 4.156 7 C -0.061 4.061 8 C 0.384 3.616 9 O -0.379 6.379 10 O -0.250 6.250 11 C 0.064 3.936 12 C -0.242 4.242 13 C -0.092 4.092 14 C -0.190 4.190 15 C 0.117 3.883 16 C -0.483 4.483 17 H 0.099 0.901 18 C -0.144 4.144 19 N -0.407 5.407 20 Si 0.735 3.265 21 H -0.191 1.191 22 H -0.202 1.202 23 H -0.185 1.185 24 C -0.250 4.250 25 C -0.080 4.080 26 O -0.016 6.016 27 H 0.121 0.879 28 H 0.110 0.890 29 H 0.121 0.879 30 H 0.188 0.812 31 H 0.190 0.810 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.107 0.893 35 H 0.138 0.862 36 H 0.094 0.906 37 H 0.113 0.887 38 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 9.840 9.360 -1.211 13.634 hybrid contribution -0.522 -0.482 0.192 0.736 sum 9.318 8.878 -1.019 12.910 Atomic orbital electron populations 1.22278 0.91553 1.05696 1.05974 1.21320 0.91883 0.83969 0.70960 1.90642 1.72387 1.31371 1.36819 1.23472 0.93386 0.85513 1.10561 1.22438 0.94624 0.96969 1.01396 1.21973 0.98450 0.92938 1.02199 1.21536 0.87031 0.87814 1.09752 1.19448 0.83187 0.85145 0.73828 1.90902 1.42480 1.58044 1.46470 1.86908 1.27394 1.28967 1.81770 1.21914 0.96559 0.73755 1.01359 1.18628 0.93201 1.18105 0.94228 1.20544 0.94892 0.98750 0.95042 1.21296 0.92393 1.06458 0.98856 1.17697 0.92884 0.86792 0.90962 1.19710 0.93977 1.32791 1.01810 0.90081 1.25984 1.00468 0.93249 0.94747 1.69823 1.37773 1.22614 1.10505 0.86258 0.80535 0.80016 0.79672 1.19115 1.20168 1.18477 1.20967 0.94485 1.12372 0.97149 1.20397 0.94419 0.97972 0.95181 1.84211 1.35154 1.13795 1.68426 0.87866 0.88964 0.87919 0.81225 0.81012 0.91552 0.91488 0.89257 0.86195 0.90558 0.88657 0.89234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.59 10.13 36.01 0.36 -1.23 16 2 C 0.44 4.60 7.23 -31.00 -0.22 4.38 16 3 O -0.44 -5.42 17.60 5.51 0.10 -5.33 16 4 C -0.08 -0.88 7.09 -36.37 -0.26 -1.14 16 5 C -0.13 -1.38 10.66 -39.04 -0.42 -1.80 16 6 C -0.14 -1.50 10.58 -39.51 -0.42 -1.92 16 7 C -0.01 -0.11 7.18 -36.48 -0.26 -0.37 16 8 C 0.54 8.68 7.96 34.40 0.27 8.95 16 9 O -0.49 -8.29 16.65 -19.28 -0.32 -8.61 16 10 O -0.33 -6.09 10.22 -42.27 -0.43 -6.52 16 11 C 0.14 2.46 5.59 36.01 0.20 2.66 16 12 C -0.24 -5.12 5.54 -104.33 -0.58 -5.70 16 13 C -0.07 -1.66 9.67 -39.66 -0.38 -2.05 16 14 C -0.17 -4.26 8.70 -38.87 -0.34 -4.60 16 15 C 0.12 3.05 5.57 -106.83 -0.60 2.46 16 16 C -0.45 -11.49 9.05 -37.74 -0.34 -11.83 16 17 H 0.08 1.96 7.91 -52.49 -0.41 1.55 16 18 C 0.07 1.79 5.14 -17.34 -0.09 1.70 16 19 N -0.78 -19.31 10.95 55.55 0.61 -18.70 16 20 Si 0.91 17.73 29.60 -169.99 -5.03 12.70 16 21 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 22 H -0.28 -5.27 7.11 56.52 0.40 -4.87 16 23 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 24 C -0.23 -5.43 9.80 -38.87 -0.38 -5.81 16 25 C -0.06 -1.33 9.67 -39.66 -0.38 -1.71 16 26 O -0.12 -1.65 10.55 4.00 0.04 -1.61 16 27 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 28 H 0.09 0.63 8.12 -51.93 -0.42 0.21 16 29 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.17 1.35 8.06 -52.49 -0.42 0.92 16 31 H 0.17 1.54 8.06 -52.48 -0.42 1.12 16 32 H 0.07 1.11 8.08 -51.93 -0.42 0.69 16 33 H 0.07 1.14 8.07 -51.93 -0.42 0.72 16 34 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16 35 H 0.12 3.07 6.16 -52.48 -0.32 2.75 16 36 H 0.28 6.32 8.30 -40.82 -0.34 5.98 16 37 H 0.10 2.10 8.06 -52.49 -0.42 1.68 16 38 H 0.09 1.70 8.06 -52.49 -0.42 1.28 16 LS Contribution 349.65 15.07 5.27 5.27 Total: -1.00 -28.32 349.65 -7.69 -36.01 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: -4.09 Total: 4.80 kcal Atomic # 6 Polarization: -14.18 SS G_CDS: -3.83 Total: -18.01 kcal Atomic # 7 Polarization: -19.31 SS G_CDS: 0.61 Total: -18.70 kcal Atomic # 8 Polarization: -21.45 SS G_CDS: -0.61 Total: -22.07 kcal Atomic # 14 Polarization: 17.73 SS G_CDS: -5.03 Total: 12.70 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -28.32 -7.69 -36.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000773683357.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.707 kcal (2) G-P(sol) polarization free energy of solvation -28.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds