Wall clock time and date at job start Tue Mar 31 2020 10:32:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21338 * 120.00128 * 2 1 4 4 C 1.46447 * 120.00163 * 179.97438 * 2 1 3 5 5 C 1.37977 * 125.93075 * 179.97438 * 4 2 1 6 6 C 1.39943 * 106.73538 * 179.97438 * 5 4 2 7 7 C 1.36659 * 107.02443 * 359.97438 * 6 5 4 8 8 C 1.47275 * 125.66310 * 179.73381 * 7 6 5 9 9 O 1.21516 * 120.00270 * 0.02562 * 8 7 6 10 10 O 1.34806 * 119.99725 * 179.97438 * 8 7 6 11 11 C 1.45197 * 116.99689 * 180.02562 * 10 8 7 12 12 C 1.50703 * 109.46886 * 180.02562 * 11 10 8 13 13 C 1.38640 * 119.74679 * 269.73350 * 12 11 10 14 14 C 1.37619 * 120.24272 * 179.72128 * 13 12 11 15 15 C 1.40709 * 119.75053 * 0.56907 * 14 13 12 16 16 C 1.41397 * 120.25162 * 179.68340 * 15 14 13 17 17 H 1.07997 * 120.00266 * 204.40932 * 16 15 14 18 18 C 1.39945 * 119.99610 * 24.40076 * 16 15 14 19 19 N 1.30822 * 119.99997 * 17.85354 * 18 16 15 20 20 Si 1.86800 * 120.00124 * 197.84838 * 18 16 15 21 21 H 1.48507 * 109.46940 * 90.00075 * 20 18 16 22 22 H 1.48496 * 109.47418 * 210.00046 * 20 18 16 23 23 H 1.48500 * 109.46849 * 330.00645 * 20 18 16 24 24 C 1.40717 * 119.50846 * 359.70010 * 15 14 13 25 25 C 1.37621 * 119.74726 * 0.02562 * 24 15 14 26 26 O 1.34476 * 108.66730 * 0.02562 * 7 6 5 27 27 H 1.09003 * 109.47094 * 240.00272 * 1 2 3 28 28 H 1.09000 * 109.47157 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.46850 * 120.00005 * 1 2 3 30 30 H 1.07999 * 126.63108 * 359.92819 * 5 4 2 31 31 H 1.08004 * 126.48646 * 179.97438 * 6 5 4 32 32 H 1.08996 * 109.47725 * 300.00277 * 11 10 8 33 33 H 1.08997 * 109.47234 * 60.01041 * 11 10 8 34 34 H 1.08002 * 119.87989 * 359.97209 * 13 12 11 35 35 H 1.08011 * 120.12473 * 180.27389 * 14 13 12 36 36 H 0.96999 * 120.00067 * 179.97438 * 19 18 16 37 37 H 1.08002 * 120.12735 * 179.97438 * 24 15 14 38 38 H 1.07998 * 119.87540 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1137 1.0508 0.0000 4 6 2.2393 -1.2683 0.0006 5 6 3.6117 -1.4108 0.0001 6 6 3.8741 -2.7854 0.0016 7 6 2.6656 -3.4234 0.0034 8 6 2.4648 -4.8824 -0.0003 9 8 3.4245 -5.6278 -0.0049 10 8 1.2164 -5.3910 0.0026 11 6 1.0941 -6.8378 -0.0007 12 6 -0.3640 -7.2186 0.0025 13 6 -1.0247 -7.4009 1.2077 14 6 -2.3576 -7.7431 1.2226 15 6 -3.0468 -7.9197 0.0086 16 6 -4.4146 -8.2779 0.0115 17 1 -4.8415 -8.7864 -0.8402 18 6 -5.2152 -7.9734 1.1183 19 7 -4.8214 -7.0739 1.9827 20 14 -6.8461 -8.8513 1.3611 21 1 -6.6316 -10.0800 2.1672 22 1 -7.7913 -7.9524 2.0708 23 1 -7.4117 -9.2196 0.0383 24 6 -2.3645 -7.7375 -1.2086 25 6 -1.0330 -7.3898 -1.1996 26 8 1.6901 -2.4977 0.0025 27 1 -0.3633 -0.5138 0.8900 28 1 -0.3633 1.0277 -0.0005 29 1 -0.3633 -0.5138 -0.8900 30 1 4.3422 -0.6153 -0.0018 31 1 4.8474 -3.2534 0.0013 32 1 1.5725 -7.2409 -0.8932 33 1 1.5783 -7.2454 0.8867 34 1 -0.4925 -7.2699 2.1382 35 1 -2.8716 -7.8803 2.1626 36 1 -5.3765 -6.8626 2.7497 37 1 -2.8836 -7.8709 -2.1462 38 1 -0.5072 -7.2499 -2.1325 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000773683357.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:32:06 Heat of formation + Delta-G solvation = -102.700957 kcal Electronic energy + Delta-G solvation = -24103.462891 eV Core-core repulsion = 20263.160924 eV Total energy + Delta-G solvation = -3840.301967 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 314.103 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.98979 -41.42075 -40.33602 -39.48613 -37.70994 -35.70415 -34.42702 -32.79555 -32.31827 -31.23684 -30.58722 -28.97379 -26.40173 -25.15207 -23.30727 -22.95709 -22.34772 -21.85454 -21.17187 -19.62573 -19.27079 -18.35020 -18.09284 -17.79426 -17.27411 -17.04230 -16.15568 -16.08677 -15.80505 -15.67690 -15.40916 -14.78016 -14.61764 -14.38135 -14.27121 -14.06177 -14.01050 -13.85580 -13.54361 -13.21358 -13.18891 -12.88401 -12.71934 -12.63130 -12.24171 -12.04069 -11.78175 -11.50804 -11.35538 -11.32467 -11.29226 -11.05881 -10.11375 -9.44632 -9.34360 -8.69328 -6.40437 -0.89891 0.39167 0.62591 1.07988 1.12455 1.39127 1.46277 1.51703 1.52537 1.62979 1.85126 2.19407 2.67360 2.82169 3.49943 3.57061 3.75727 3.93550 4.03045 4.10111 4.18218 4.22707 4.44666 4.46802 4.47811 4.54810 4.55012 4.66554 4.99505 5.00656 5.09476 5.11524 5.17325 5.30551 5.39257 5.40624 5.64722 5.87250 6.05378 6.13023 6.13476 6.31665 6.44427 6.64099 6.88087 6.96646 8.27096 Molecular weight = 314.10amu Principal moments of inertia in cm(-1) A = 0.015242 B = 0.002835 C = 0.002491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1836.593796 B = 9875.551303 C =11238.519549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.447 3.553 3 O -0.457 6.457 4 C -0.080 4.080 5 C -0.129 4.129 6 C -0.111 4.111 7 C -0.041 4.041 8 C 0.546 3.454 9 O -0.501 6.501 10 O -0.352 6.352 11 C 0.139 3.861 12 C -0.234 4.234 13 C -0.079 4.079 14 C -0.194 4.194 15 C 0.089 3.911 16 C -0.492 4.492 17 H 0.080 0.920 18 C 0.036 3.964 19 N -0.816 5.816 20 Si 0.984 3.016 21 H -0.262 1.262 22 H -0.267 1.267 23 H -0.257 1.257 24 C -0.245 4.245 25 C -0.063 4.063 26 O -0.139 6.139 27 H 0.107 0.893 28 H 0.105 0.895 29 H 0.109 0.891 30 H 0.196 0.804 31 H 0.195 0.805 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.107 0.893 35 H 0.104 0.896 36 H 0.291 0.709 37 H 0.103 0.897 38 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.785 9.868 -1.700 14.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C 0.325 3.675 3 O -0.333 6.333 4 C -0.133 4.133 5 C -0.148 4.148 6 C -0.130 4.130 7 C -0.094 4.094 8 C 0.390 3.610 9 O -0.392 6.392 10 O -0.268 6.268 11 C 0.068 3.932 12 C -0.235 4.235 13 C -0.097 4.097 14 C -0.214 4.214 15 C 0.086 3.914 16 C -0.520 4.520 17 H 0.098 0.902 18 C -0.181 4.181 19 N -0.441 5.441 20 Si 0.805 3.195 21 H -0.187 1.187 22 H -0.192 1.192 23 H -0.181 1.181 24 C -0.265 4.265 25 C -0.081 4.081 26 O -0.034 6.034 27 H 0.126 0.874 28 H 0.124 0.876 29 H 0.127 0.873 30 H 0.213 0.787 31 H 0.212 0.788 32 H 0.102 0.898 33 H 0.096 0.904 34 H 0.125 0.875 35 H 0.122 0.878 36 H 0.102 0.898 37 H 0.121 0.879 38 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 10.944 10.223 -1.494 15.050 hybrid contribution -0.658 -0.612 0.246 0.932 sum 10.285 9.611 -1.248 14.132 Atomic orbital electron populations 1.22321 0.89775 1.06798 1.06405 1.21598 0.92719 0.83216 0.69936 1.90640 1.72933 1.31819 1.37955 1.23874 0.94246 0.85267 1.09883 1.22796 0.94561 0.97246 1.00235 1.22304 0.98378 0.93055 0.99296 1.21329 0.88045 0.86844 1.13146 1.19608 0.82140 0.86107 0.73112 1.90887 1.42383 1.58701 1.47249 1.86839 1.28989 1.28504 1.82465 1.21796 0.94352 0.74234 1.02851 1.18964 0.94786 1.16186 0.93557 1.20797 0.94278 0.98078 0.96592 1.21268 0.93517 1.08358 0.98222 1.18047 0.93650 0.87775 0.91905 1.19945 0.94570 1.34499 1.03009 0.90206 1.26812 1.03924 0.93396 0.93925 1.69869 1.39443 1.23653 1.11156 0.85167 0.75983 0.78750 0.79629 1.18658 1.19175 1.18103 1.21177 0.95586 1.12827 0.96903 1.20729 0.93883 0.96841 0.96686 1.84177 1.35628 1.14380 1.69173 0.87430 0.87610 0.87277 0.78685 0.78812 0.89840 0.90356 0.87466 0.87779 0.89843 0.87933 0.86290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.86 10.13 71.24 0.72 -2.13 16 2 C 0.45 8.61 7.23 27.83 0.20 8.81 16 3 O -0.46 -10.59 17.60 -3.21 -0.06 -10.64 16 4 C -0.08 -1.70 7.09 24.35 0.17 -1.53 16 5 C -0.13 -2.30 10.66 22.62 0.24 -2.05 16 6 C -0.11 -2.16 10.58 22.31 0.24 -1.93 16 7 C -0.04 -1.08 7.18 24.28 0.17 -0.90 16 8 C 0.55 16.77 7.96 70.20 0.56 17.33 16 9 O -0.50 -16.14 16.65 19.78 0.33 -15.81 16 10 O -0.35 -12.37 10.22 -55.75 -0.57 -12.94 16 11 C 0.14 4.82 5.59 71.24 0.40 5.21 16 12 C -0.23 -9.78 5.54 -19.67 -0.11 -9.89 16 13 C -0.08 -3.59 9.67 22.22 0.21 -3.38 16 14 C -0.19 -10.01 8.70 22.73 0.20 -9.81 16 15 C 0.09 4.69 5.57 -21.29 -0.12 4.57 16 16 C -0.49 -25.73 9.05 23.46 0.21 -25.52 16 17 H 0.08 4.01 7.91 -2.91 -0.02 3.99 16 18 C 0.04 1.74 5.14 85.26 0.44 2.18 16 19 N -0.82 -41.40 10.95 21.83 0.24 -41.16 16 20 Si 0.98 36.73 29.60 68.60 2.03 38.76 16 21 H -0.26 -9.51 7.11 99.48 0.71 -8.80 16 22 H -0.27 -9.47 7.11 99.48 0.71 -8.76 16 23 H -0.26 -9.35 7.11 99.48 0.71 -8.64 16 24 C -0.25 -11.73 9.80 22.73 0.22 -11.51 16 25 C -0.06 -2.69 9.67 22.22 0.21 -2.48 16 26 O -0.14 -3.59 10.55 -7.35 -0.08 -3.67 16 27 H 0.11 1.50 8.14 -2.39 -0.02 1.49 16 28 H 0.11 1.25 8.12 -2.39 -0.02 1.23 16 29 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.20 2.41 8.06 -2.91 -0.02 2.39 16 31 H 0.19 2.83 8.06 -2.91 -0.02 2.80 16 32 H 0.08 2.60 8.08 -2.39 -0.02 2.58 16 33 H 0.08 2.52 8.07 -2.39 -0.02 2.50 16 34 H 0.11 4.36 8.06 -2.91 -0.02 4.34 16 35 H 0.10 5.60 6.16 -2.90 -0.02 5.58 16 36 H 0.29 13.25 8.30 -92.71 -0.77 12.48 16 37 H 0.10 4.60 8.06 -2.91 -0.02 4.57 16 38 H 0.12 4.29 8.06 -2.91 -0.02 4.27 16 Total: -1.00 -61.98 349.65 6.97 -55.01 By element: Atomic # 1 Polarization: 22.38 SS G_CDS: 1.10 Total: 23.48 kcal Atomic # 6 Polarization: -37.00 SS G_CDS: 3.98 Total: -33.03 kcal Atomic # 7 Polarization: -41.40 SS G_CDS: 0.24 Total: -41.16 kcal Atomic # 8 Polarization: -42.69 SS G_CDS: -0.37 Total: -43.06 kcal Atomic # 14 Polarization: 36.73 SS G_CDS: 2.03 Total: 38.76 kcal Total: -61.98 6.97 -55.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000773683357.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.687 kcal (2) G-P(sol) polarization free energy of solvation -61.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds