Wall clock time and date at job start Tue Mar 31 2020 11:02:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 119.99866 * 2 1 4 4 H 1.48505 * 109.47191 * 269.99982 * 3 2 1 5 5 H 1.48496 * 109.47225 * 29.99987 * 3 2 1 6 6 H 1.48497 * 109.47409 * 149.99984 * 3 2 1 7 7 C 1.37880 * 120.00223 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99692 * 0.02562 * 7 2 1 9 9 C 1.50693 * 120.00065 * 179.97438 * 7 2 1 10 10 C 1.52998 * 109.47065 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.46910 * 180.02562 * 10 9 7 12 12 C 1.53005 * 109.47149 * 180.02562 * 11 10 9 13 13 C 1.50693 * 109.47304 * 179.97438 * 12 11 10 14 14 O 1.21277 * 120.00132 * 0.02562 * 13 12 11 15 15 N 1.34777 * 120.00128 * 179.97438 * 13 12 11 16 16 N 1.40099 * 120.00105 * 179.97438 * 15 13 12 17 17 C 1.39738 * 119.99743 * 180.02562 * 16 15 13 18 18 C 1.38921 * 120.05217 * 359.97438 * 17 16 15 19 19 C 1.38115 * 119.98544 * 180.02562 * 18 17 16 20 20 C 1.38347 * 120.08340 * 359.97438 * 19 18 17 21 21 Cl 1.73604 * 119.94583 * 180.27829 * 20 19 18 22 22 C 1.38585 * 120.10254 * 0.02562 * 20 19 18 23 23 F 1.35102 * 119.99163 * 180.02562 * 22 20 19 24 24 C 1.38325 * 120.01243 * 359.97438 * 22 20 19 25 25 H 0.96998 * 120.00188 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.47348 * 60.00107 * 9 7 2 27 27 H 1.08997 * 109.47543 * 300.00185 * 9 7 2 28 28 H 1.09000 * 109.47390 * 60.00171 * 10 9 7 29 29 H 1.09005 * 109.47379 * 299.99874 * 10 9 7 30 30 H 1.08995 * 109.47489 * 60.00414 * 11 10 9 31 31 H 1.09005 * 109.47223 * 299.99709 * 11 10 9 32 32 H 1.09009 * 109.46681 * 59.99767 * 12 11 10 33 33 H 1.08997 * 109.46964 * 300.00234 * 12 11 10 34 34 H 0.97003 * 119.99754 * 0.02562 * 15 13 12 35 35 H 0.96993 * 120.00132 * 0.02562 * 16 15 13 36 36 H 1.08000 * 120.00916 * 0.04731 * 18 17 16 37 37 H 1.07995 * 119.95453 * 180.02562 * 19 18 17 38 38 H 1.08002 * 120.04138 * 179.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0014 9 6 3.5116 -1.1940 -0.0011 10 6 4.0216 -2.6365 -0.0023 11 6 5.5516 -2.6364 -0.0022 12 6 6.0617 -4.0789 -0.0040 13 6 7.5687 -4.0789 -0.0046 14 8 8.1750 -3.0286 -0.0032 15 7 8.2426 -5.2460 -0.0057 16 7 9.6436 -5.2460 -0.0068 17 6 10.3423 -6.4562 -0.0084 18 6 9.6487 -7.6599 -0.0084 19 6 10.3407 -8.8552 -0.0094 20 6 11.7242 -8.8556 -0.0111 21 17 12.5903 -10.3601 -0.0197 22 6 12.4196 -7.6569 -0.0111 23 9 13.7706 -7.6599 -0.0132 24 6 11.7307 -6.4574 -0.0100 25 1 -0.4850 0.8400 0.0004 26 1 3.8753 -0.6804 0.8888 27 1 3.8746 -0.6800 -0.8911 28 1 3.6580 -3.1498 -0.8925 29 1 3.6586 -3.1510 0.8875 30 1 5.9149 -2.1234 0.8882 31 1 5.9150 -2.1218 -0.8918 32 1 5.6983 -4.5916 -0.8948 33 1 5.6983 -4.5939 0.8852 34 1 7.7576 -6.0861 -0.0064 35 1 10.1285 -4.4060 -0.0064 36 1 8.5687 -7.6610 -0.0079 37 1 9.8010 -9.7907 -0.0099 38 1 12.2722 -5.5229 -0.0096 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000806986800.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:10 Heat of formation + Delta-G solvation = -64.804009 kcal Electronic energy + Delta-G solvation = -21799.976043 eV Core-core repulsion = 18003.550101 eV Total energy + Delta-G solvation = -3796.425941 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.094 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -50.05356 -41.26290 -40.14058 -37.76345 -36.89500 -36.45767 -34.61397 -33.37107 -31.93305 -31.47862 -29.33734 -27.39948 -24.57599 -24.00919 -23.02423 -21.88247 -21.55226 -19.66939 -18.89697 -18.69629 -17.80878 -17.61202 -17.10346 -17.01756 -16.82959 -16.32919 -16.12220 -15.74490 -15.29240 -14.93298 -14.70650 -14.56090 -14.45151 -13.93226 -13.74641 -13.50532 -13.44796 -13.32313 -12.85046 -12.77976 -12.33304 -12.07072 -12.04598 -11.88772 -11.74558 -11.53623 -11.31554 -11.24872 -11.06008 -10.74505 -10.38267 -9.99087 -8.42971 -8.28304 -6.31074 -0.01136 0.10313 0.77487 1.13528 1.35615 1.37380 1.49472 1.51357 2.36745 2.43776 2.93672 3.07406 3.13766 3.60154 3.68159 3.92134 4.02375 4.09685 4.18486 4.37431 4.60352 4.67945 4.69852 4.79432 4.86216 4.88122 4.96887 5.04939 5.16793 5.21867 5.30951 5.37862 5.64037 5.69178 5.70214 5.71171 6.16890 6.31367 6.55005 6.77600 7.22799 7.33859 8.88119 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.044938 B = 0.001719 C = 0.001659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.924257 B =16285.248181 C =16877.116872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.003 3.997 3 Si 0.946 3.054 4 H -0.268 1.268 5 H -0.284 1.284 6 H -0.251 1.251 7 C -0.529 4.529 8 H 0.038 0.962 9 C -0.019 4.019 10 C -0.094 4.094 11 C -0.099 4.099 12 C -0.119 4.119 13 C 0.515 3.485 14 O -0.581 6.581 15 N -0.513 5.513 16 N -0.539 5.539 17 C 0.249 3.751 18 C -0.194 4.194 19 C -0.021 4.021 20 C -0.144 4.144 21 Cl -0.065 7.065 22 C 0.148 3.852 23 F -0.135 7.135 24 C -0.222 4.222 25 H 0.265 0.735 26 H 0.013 0.987 27 H 0.012 0.988 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.127 0.873 33 H 0.127 0.873 34 H 0.439 0.561 35 H 0.434 0.566 36 H 0.161 0.839 37 H 0.169 0.831 38 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.778 -21.823 -0.026 33.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.194 4.194 3 Si 0.770 3.230 4 H -0.193 1.193 5 H -0.210 1.210 6 H -0.175 1.175 7 C -0.567 4.567 8 H 0.057 0.943 9 C -0.056 4.056 10 C -0.132 4.132 11 C -0.137 4.137 12 C -0.160 4.160 13 C 0.304 3.696 14 O -0.458 6.458 15 N -0.262 5.262 16 N -0.262 5.262 17 C 0.143 3.857 18 C -0.217 4.217 19 C -0.041 4.041 20 C -0.174 4.174 21 Cl -0.036 7.036 22 C 0.127 3.873 23 F -0.114 7.114 24 C -0.247 4.247 25 H 0.074 0.926 26 H 0.032 0.968 27 H 0.031 0.969 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.145 0.855 33 H 0.145 0.855 34 H 0.285 0.715 35 H 0.277 0.723 36 H 0.179 0.821 37 H 0.187 0.813 38 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 25.966 -21.086 -0.023 33.449 hybrid contribution 0.349 0.860 -0.019 0.929 sum 26.315 -20.226 -0.043 33.190 Atomic orbital electron populations 1.70061 1.08123 1.28010 1.52976 1.25993 0.95592 1.03375 0.94415 0.85711 0.79423 0.78735 0.79103 1.19326 1.20965 1.17496 1.21572 0.92233 0.93181 1.49757 0.94323 1.19592 0.93782 0.96168 0.96092 1.21341 0.93645 0.96564 1.01661 1.21305 0.94829 0.95557 1.02032 1.21654 0.87043 0.99581 1.07724 1.21524 0.91226 0.81856 0.75035 1.90732 1.70936 1.32670 1.51509 1.44991 0.94294 1.10677 1.76275 1.43488 0.94105 1.07007 1.81624 1.17518 0.89893 0.85409 0.92889 1.20779 1.01485 0.89417 1.10023 1.20947 0.90083 0.99965 0.93067 1.20881 0.93913 0.85978 1.16644 1.98372 1.76943 1.30908 1.97411 1.17108 0.76761 0.92845 1.00605 1.91523 1.28970 1.97318 1.93561 1.20320 0.92529 0.97917 1.13896 0.92598 0.96820 0.96932 0.92137 0.92168 0.92852 0.92786 0.85456 0.85469 0.71500 0.72251 0.82133 0.81330 0.82795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.55 13.96 21.45 0.30 -59.25 16 2 C 0.00 0.17 5.47 84.65 0.46 0.63 16 3 Si 0.95 44.92 27.47 68.60 1.88 46.81 16 4 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 5 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 6 H -0.25 -11.27 6.54 99.48 0.65 -10.62 16 7 C -0.53 -30.22 9.66 25.60 0.25 -29.97 16 8 H 0.04 2.38 7.99 -2.91 -0.02 2.36 16 9 C -0.02 -0.87 4.04 29.85 0.12 -0.75 16 10 C -0.09 -3.27 5.15 30.59 0.16 -3.11 16 11 C -0.10 -2.74 4.50 30.60 0.14 -2.61 16 12 C -0.12 -1.98 5.70 29.85 0.17 -1.81 16 13 C 0.52 9.88 7.95 87.65 0.70 10.58 16 14 O -0.58 -16.76 15.82 -3.02 -0.05 -16.81 16 15 N -0.51 -6.26 6.22 -173.54 -1.08 -7.33 16 16 N -0.54 -7.29 6.45 -51.36 -0.33 -7.63 16 17 C 0.25 2.92 6.72 38.19 0.26 3.18 16 18 C -0.19 -1.58 9.48 22.40 0.21 -1.37 16 19 C -0.02 -0.19 9.82 22.27 0.22 0.03 16 20 C -0.14 -2.00 6.33 22.38 0.14 -1.86 16 21 Cl -0.06 -0.96 28.61 -2.72 -0.08 -1.04 16 22 C 0.15 2.31 7.27 22.37 0.16 2.47 16 23 F -0.14 -2.49 16.83 44.97 0.76 -1.73 16 24 C -0.22 -2.92 9.87 22.44 0.22 -2.70 16 25 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 26 H 0.01 0.63 7.20 -2.39 -0.02 0.61 16 27 H 0.01 0.57 7.57 -2.39 -0.02 0.55 16 28 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 29 H 0.06 2.01 8.14 -2.38 -0.02 1.99 16 30 H 0.05 1.61 8.10 -2.39 -0.02 1.60 16 31 H 0.05 1.63 8.10 -2.38 -0.02 1.61 16 32 H 0.13 1.46 8.14 -2.38 -0.02 1.44 16 33 H 0.13 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.44 2.12 6.60 -213.32 -1.41 0.71 16 35 H 0.43 6.67 8.01 -213.33 -1.71 4.96 16 36 H 0.16 0.37 6.20 -2.91 -0.02 0.35 16 37 H 0.17 0.69 8.06 -2.91 -0.02 0.66 16 38 H 0.15 1.68 8.06 -2.91 -0.02 1.65 16 Total: -1.00 -74.79 344.84 2.55 -72.24 By element: Atomic # 1 Polarization: 4.11 SS G_CDS: -2.06 Total: 2.05 kcal Atomic # 6 Polarization: -30.51 SS G_CDS: 3.21 Total: -27.31 kcal Atomic # 7 Polarization: -73.10 SS G_CDS: -1.11 Total: -74.21 kcal Atomic # 8 Polarization: -16.76 SS G_CDS: -0.05 Total: -16.81 kcal Atomic # 9 Polarization: -2.49 SS G_CDS: 0.76 Total: -1.73 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 1.88 Total: 46.81 kcal Atomic # 17 Polarization: -0.96 SS G_CDS: -0.08 Total: -1.04 kcal Total: -74.79 2.55 -72.24 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000806986800.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.435 kcal (2) G-P(sol) polarization free energy of solvation -74.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds