Wall clock time and date at job start Tue Mar 31 2020 10:53:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86793 * 120.00271 * 2 1 4 4 H 1.48508 * 109.47249 * 240.00205 * 3 2 1 5 5 H 1.48499 * 109.47256 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47114 * 120.00327 * 3 2 1 7 7 C 1.37884 * 119.99718 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99875 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99811 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.46946 * 180.02562 * 9 7 2 11 11 C 1.53009 * 109.47110 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.47110 * 179.97438 * 11 10 9 13 13 C 1.50699 * 109.47327 * 180.02562 * 12 11 10 14 14 O 1.21285 * 119.99715 * 0.02562 * 13 12 11 15 15 N 1.34776 * 120.00370 * 180.02562 * 13 12 11 16 16 N 1.40098 * 120.00086 * 180.02562 * 15 13 12 17 17 C 1.39839 * 119.99778 * 180.02562 * 16 15 13 18 18 C 1.38809 * 120.07533 * 0.02562 * 17 16 15 19 19 C 1.38262 * 119.94102 * 179.97438 * 18 17 16 20 20 Cl 1.73595 * 119.96107 * 179.97438 * 19 18 17 21 21 C 1.38390 * 120.08002 * 0.02562 * 19 18 17 22 22 C 1.38281 * 120.14805 * 359.95618 * 21 19 18 23 23 C 1.38273 * 120.06402 * 0.04537 * 22 21 19 24 24 F 1.35095 * 120.04238 * 180.25778 * 23 22 21 25 25 H 0.97001 * 119.99343 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.47399 * 60.00230 * 9 7 2 27 27 H 1.09006 * 109.47542 * 300.00080 * 9 7 2 28 28 H 1.08999 * 109.47352 * 60.00237 * 10 9 7 29 29 H 1.09002 * 109.47106 * 299.99789 * 10 9 7 30 30 H 1.08999 * 109.46732 * 59.99965 * 11 10 9 31 31 H 1.08994 * 109.47205 * 300.00213 * 11 10 9 32 32 H 1.09002 * 109.47098 * 59.99890 * 12 11 10 33 33 H 1.09002 * 109.47106 * 299.99896 * 12 11 10 34 34 H 0.97002 * 119.99476 * 359.97438 * 15 13 12 35 35 H 0.96997 * 119.99922 * 359.97438 * 16 15 13 36 36 H 1.07997 * 120.03100 * 359.95805 * 18 17 16 37 37 H 1.08003 * 119.92444 * 179.97438 * 21 19 18 38 38 H 1.08000 * 119.96678 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6963 -1.2126 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 6 1.4800 -4.9872 0.0001 12 6 2.4741 -6.1502 -0.0005 13 6 1.7206 -7.4552 -0.0005 14 8 0.5078 -7.4551 -0.0005 15 7 2.3944 -8.6225 -0.0005 16 7 1.6938 -9.8357 -0.0011 17 6 2.3930 -11.0468 -0.0005 18 6 3.7811 -11.0486 0.0011 19 6 4.4696 -12.2477 0.0021 20 17 6.2055 -12.2506 0.0035 21 6 3.7764 -13.4455 0.0011 22 6 2.3936 -13.4477 -0.0002 23 6 1.6990 -12.2521 -0.0013 24 9 0.3481 -12.2548 0.0028 25 1 -0.4849 0.8401 -0.0004 26 1 0.6239 -2.5567 -0.8903 27 1 0.6245 -2.5571 0.8897 28 1 2.8717 -3.6045 0.8894 29 1 2.8717 -3.6044 -0.8906 30 1 0.8530 -5.0451 -0.8896 31 1 0.8536 -5.0446 0.8903 32 1 3.1015 -6.0924 0.8890 33 1 3.1001 -6.0925 -0.8910 34 1 3.3644 -8.6225 -0.0009 35 1 0.7239 -9.8356 -0.0011 36 1 4.3228 -10.1144 0.0012 37 1 4.3168 -14.3806 0.0015 38 1 1.8557 -14.3842 -0.0006 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871271629.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:40 Heat of formation + Delta-G solvation = -67.702259 kcal Electronic energy + Delta-G solvation = -22008.730885 eV Core-core repulsion = 18212.179266 eV Total energy + Delta-G solvation = -3796.551619 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.094 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.94989 -41.26176 -40.15258 -37.76187 -37.02166 -36.52545 -34.64476 -33.39644 -31.60216 -31.40548 -29.34979 -27.31795 -24.74924 -23.86168 -23.36255 -21.97971 -21.55436 -19.59131 -18.90355 -18.38533 -18.25500 -17.43920 -17.08708 -16.99001 -16.75543 -16.50236 -16.02122 -15.70155 -15.39300 -14.87339 -14.56677 -14.54793 -14.45934 -13.94606 -13.63010 -13.46131 -13.39472 -13.30944 -12.78779 -12.56857 -12.38208 -12.17169 -12.14246 -12.07012 -11.96731 -11.41414 -11.36041 -11.24625 -10.97915 -10.61171 -10.53437 -9.81670 -8.47659 -8.17925 -6.29854 -0.10805 0.16418 0.70097 1.06789 1.41067 1.44823 1.46002 1.52620 2.40301 2.42454 2.94073 3.06067 3.14869 3.60995 3.64575 3.98525 3.98725 4.14244 4.14473 4.32478 4.56943 4.61620 4.68370 4.79411 4.82487 4.87214 5.07704 5.12821 5.18789 5.28693 5.35536 5.39919 5.58123 5.69425 5.79779 5.89564 6.07254 6.26227 6.45859 6.88950 7.16065 7.39701 8.93987 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.023107 B = 0.001955 C = 0.001806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.489118 B =14317.251759 C =15497.688833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.008 4.008 3 Si 0.969 3.031 4 H -0.264 1.264 5 H -0.287 1.287 6 H -0.264 1.264 7 C -0.541 4.541 8 H 0.067 0.933 9 C 0.017 3.983 10 C -0.095 4.095 11 C -0.097 4.097 12 C -0.115 4.115 13 C 0.513 3.487 14 O -0.583 6.583 15 N -0.512 5.512 16 N -0.547 5.547 17 C 0.192 3.808 18 C -0.174 4.174 19 C 0.005 3.995 20 Cl -0.055 7.055 21 C -0.136 4.136 22 C -0.079 4.079 23 C 0.012 3.988 24 F -0.148 7.148 25 H 0.262 0.738 26 H -0.016 1.016 27 H -0.016 1.016 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.044 0.956 31 H 0.044 0.956 32 H 0.130 0.870 33 H 0.130 0.870 34 H 0.438 0.562 35 H 0.433 0.567 36 H 0.152 0.848 37 H 0.166 0.834 38 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.746 -31.884 -0.003 34.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.206 4.206 3 Si 0.793 3.207 4 H -0.189 1.189 5 H -0.213 1.213 6 H -0.189 1.189 7 C -0.579 4.579 8 H 0.086 0.914 9 C -0.020 4.020 10 C -0.133 4.133 11 C -0.135 4.135 12 C -0.156 4.156 13 C 0.301 3.699 14 O -0.460 6.460 15 N -0.261 5.261 16 N -0.272 5.272 17 C 0.087 3.913 18 C -0.198 4.198 19 C -0.023 4.023 20 Cl -0.026 7.026 21 C -0.156 4.156 22 C -0.098 4.098 23 C -0.013 4.013 24 F -0.126 7.126 25 H 0.071 0.929 26 H 0.003 0.997 27 H 0.002 0.998 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.148 0.852 33 H 0.148 0.852 34 H 0.283 0.717 35 H 0.275 0.725 36 H 0.170 0.830 37 H 0.184 0.816 38 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 12.958 -31.575 -0.002 34.130 hybrid contribution -0.520 1.131 0.001 1.244 sum 12.438 -30.444 -0.001 32.887 Atomic orbital electron populations 1.70128 1.08060 1.27758 1.51901 1.26103 0.95790 1.03769 0.94892 0.85444 0.78156 0.77742 0.79353 1.18887 1.21256 1.18900 1.21737 0.93792 0.92194 1.50161 0.91438 1.19069 0.94759 0.93861 0.94312 1.21445 0.97796 0.92419 1.01643 1.21270 0.97497 0.93455 1.01324 1.21654 0.98911 0.87156 1.07855 1.21646 0.88253 0.84934 0.75045 1.90741 1.16196 1.87595 1.51501 1.44969 1.08869 0.95874 1.76353 1.43330 1.06851 0.94221 1.82792 1.17694 0.91922 0.83244 0.98427 1.20290 0.90315 0.99183 1.10031 1.20720 0.85341 0.94462 1.01760 1.98404 1.08617 1.98919 1.96628 1.21015 0.92913 0.97953 1.03747 1.21171 0.94192 0.96849 0.97632 1.17372 0.76926 0.93229 1.13814 1.91474 1.29105 1.97245 1.94826 0.92917 0.99739 0.99752 0.91761 0.91752 0.93675 0.93667 0.85195 0.85202 0.71655 0.72487 0.83027 0.81636 0.81060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.78 13.29 21.45 0.28 -58.50 16 2 C -0.01 -0.49 5.46 84.66 0.46 -0.03 16 3 Si 0.97 44.43 29.54 68.60 2.03 46.46 16 4 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 5 H -0.29 -13.01 7.11 99.48 0.71 -12.31 16 6 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 7 C -0.54 -30.88 9.11 25.60 0.23 -30.65 16 8 H 0.07 3.58 7.74 -2.91 -0.02 3.56 16 9 C 0.02 0.92 4.97 29.85 0.15 1.07 16 10 C -0.10 -3.69 5.15 30.60 0.16 -3.53 16 11 C -0.10 -3.25 4.50 30.60 0.14 -3.12 16 12 C -0.12 -2.41 5.70 29.85 0.17 -2.24 16 13 C 0.51 12.58 7.95 87.66 0.70 13.27 16 14 O -0.58 -20.41 15.82 -3.04 -0.05 -20.46 16 15 N -0.51 -9.03 6.22 -173.53 -1.08 -10.11 16 16 N -0.55 -10.88 6.46 -51.22 -0.33 -11.21 16 17 C 0.19 3.15 6.73 38.20 0.26 3.41 16 18 C -0.17 -2.20 9.26 22.41 0.21 -2.00 16 19 C 0.00 0.05 6.32 22.31 0.14 0.20 16 20 Cl -0.05 -0.59 28.95 -2.72 -0.08 -0.67 16 21 C -0.14 -1.22 9.82 22.32 0.22 -1.00 16 22 C -0.08 -0.82 10.02 22.29 0.22 -0.59 16 23 C 0.01 0.18 7.31 22.48 0.16 0.35 16 24 F -0.15 -2.88 16.64 44.97 0.75 -2.14 16 25 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 26 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 27 H -0.02 -0.94 8.14 -2.38 -0.02 -0.96 16 28 H 0.06 2.28 8.14 -2.39 -0.02 2.27 16 29 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 30 H 0.04 1.68 8.10 -2.39 -0.02 1.66 16 31 H 0.04 1.68 8.10 -2.39 -0.02 1.66 16 32 H 0.13 1.95 8.14 -2.39 -0.02 1.94 16 33 H 0.13 1.95 8.14 -2.39 -0.02 1.94 16 34 H 0.44 4.43 6.61 -213.32 -1.41 3.02 16 35 H 0.43 10.12 7.49 -213.33 -1.60 8.52 16 36 H 0.15 1.35 6.20 -2.91 -0.02 1.34 16 37 H 0.17 0.69 8.06 -2.91 -0.02 0.67 16 38 H 0.17 0.89 8.06 -2.91 -0.02 0.87 16 Total: -1.00 -75.73 348.05 2.84 -72.89 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -1.90 Total: 8.59 kcal Atomic # 6 Polarization: -28.07 SS G_CDS: 3.22 Total: -24.85 kcal Atomic # 7 Polarization: -78.69 SS G_CDS: -1.12 Total: -79.81 kcal Atomic # 8 Polarization: -20.41 SS G_CDS: -0.05 Total: -20.46 kcal Atomic # 9 Polarization: -2.88 SS G_CDS: 0.75 Total: -2.14 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Atomic # 17 Polarization: -0.59 SS G_CDS: -0.08 Total: -0.67 kcal Total: -75.73 2.84 -72.89 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871271629.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.190 kcal (2) G-P(sol) polarization free energy of solvation -75.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds