Wall clock time and date at job start Tue Mar 31 2020 10:57:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86809 * 119.99800 * 2 1 4 4 H 1.48498 * 109.46921 * 239.99787 * 3 2 1 5 5 H 1.48505 * 109.46983 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47177 * 119.99914 * 3 2 1 7 7 C 1.38813 * 120.00419 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00206 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99613 * 359.97438 * 7 2 1 10 10 C 1.46498 * 119.99544 * 180.02562 * 9 7 2 11 11 H 1.09003 * 110.64177 * 323.30871 * 10 9 7 12 12 C 1.55158 * 110.71498 * 199.97784 * 10 9 7 13 13 C 1.55135 * 101.48242 * 205.96898 * 12 10 9 14 14 N 1.47420 * 104.72403 * 37.29663 * 13 12 10 15 15 C 1.34777 * 125.64903 * 155.81752 * 14 13 12 16 16 O 1.21588 * 119.99809 * 179.68913 * 15 14 13 17 17 C 1.47546 * 120.00067 * 359.69318 * 15 14 13 18 18 C 1.39925 * 120.17953 * 89.97520 * 17 15 14 19 19 F 1.35102 * 120.07392 * 0.04677 * 18 17 15 20 20 C 1.38167 * 119.85282 * 180.02562 * 18 17 15 21 21 C 1.38336 * 120.21365 * 359.97438 * 20 18 17 22 22 C 1.38444 * 120.36203 * 0.04478 * 21 20 18 23 23 F 1.35100 * 119.93386 * 179.97438 * 22 21 20 24 24 C 1.38453 * 120.13755 * 359.95626 * 22 21 20 25 25 F 1.35103 * 120.10206 * 180.29529 * 24 22 21 26 26 C 1.47022 * 108.70223 * 335.55022 * 14 13 12 27 27 H 0.96996 * 119.99863 * 0.02562 * 1 2 3 28 28 H 0.96996 * 119.99967 * 0.02562 * 9 7 2 29 29 H 1.08995 * 111.00737 * 324.20768 * 12 10 9 30 30 H 1.08994 * 111.00636 * 88.06199 * 12 10 9 31 31 H 1.08998 * 110.49415 * 278.45106 * 13 12 10 32 32 H 1.09007 * 110.34296 * 156.05986 * 13 12 10 33 33 H 1.07999 * 119.89365 * 180.02562 * 20 18 17 34 34 H 1.08003 * 119.82421 * 180.02562 * 21 20 18 35 35 H 1.09004 * 109.88104 * 120.70553 * 26 14 13 36 36 H 1.08993 * 109.88463 * 241.71628 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6966 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0016 10 6 2.0582 -3.6567 0.0027 11 1 2.9587 -3.5810 -0.6068 12 6 1.1515 -4.8145 -0.4921 13 6 1.8069 -6.0378 0.2012 14 7 2.2232 -5.5399 1.5248 15 6 2.4088 -6.2953 2.6255 16 8 2.7599 -5.7758 3.6672 17 6 2.1860 -7.7526 2.5662 18 6 3.2377 -8.6119 2.2293 19 9 4.4621 -8.1094 1.9578 20 6 3.0214 -9.9755 2.1753 21 6 1.7692 -10.4932 2.4537 22 6 0.7222 -9.6512 2.7877 23 9 -0.4973 -10.1661 3.0574 24 6 0.9225 -8.2825 2.8461 25 9 -0.0983 -7.4619 3.1779 26 6 2.4086 -4.0837 1.4437 27 1 -0.4850 0.8400 -0.0004 28 1 0.3557 -2.3880 0.0016 29 1 0.1235 -4.6760 -0.1575 30 1 1.1981 -4.9110 -1.5767 31 1 2.6733 -6.3788 -0.3656 32 1 1.0822 -6.8448 0.3102 33 1 3.8328 -10.6393 1.9157 34 1 1.6072 -11.5601 2.4101 35 1 1.7442 -3.5855 2.1499 36 1 3.4446 -3.8289 1.6668 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000969760927.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:57:15 Heat of formation + Delta-G solvation = -116.722877 kcal Electronic energy + Delta-G solvation = -25954.600822 eV Core-core repulsion = 21604.126829 eV Total energy + Delta-G solvation = -4350.473993 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 314.098 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.91386 -49.46000 -48.97855 -40.18196 -38.70304 -37.30676 -34.20790 -32.19219 -31.27169 -30.51099 -29.66554 -27.69856 -25.20717 -23.75053 -23.37120 -22.60723 -20.51618 -19.74142 -18.69144 -18.35310 -18.04585 -17.23816 -17.12152 -16.66866 -16.33343 -15.97002 -15.90223 -15.43976 -15.31891 -14.96232 -14.82533 -14.56398 -14.01580 -13.54851 -13.51033 -13.32290 -12.99065 -12.74450 -12.59351 -12.25145 -12.22100 -11.94704 -11.68907 -11.20099 -10.86503 -10.77283 -10.40890 -10.18990 -10.07397 -9.77907 -9.63300 -9.15544 -9.02609 -8.50520 -7.12133 -5.85489 -3.16891 0.10939 0.22811 2.34690 2.51117 2.85190 3.15860 3.41338 3.46136 3.46760 3.48757 3.87532 3.89691 4.18225 4.25709 4.52502 4.81865 4.85864 5.02932 5.13198 5.19130 5.22589 5.26132 5.40274 5.44117 5.62129 5.65748 5.86225 6.03878 6.05672 6.23216 6.29136 6.38690 6.56977 6.82108 7.52447 7.63151 8.03651 8.31716 9.43757 9.96071 10.30883 11.36348 Molecular weight = 314.10amu Principal moments of inertia in cm(-1) A = 0.023881 B = 0.003260 C = 0.003099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.216118 B = 8585.753023 C = 9031.809665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.007 4.007 3 Si 0.909 3.091 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.252 4.252 8 H 0.073 0.927 9 N -0.712 5.712 10 C 0.173 3.827 11 H 0.068 0.932 12 C -0.138 4.138 13 C 0.099 3.901 14 N -0.597 5.597 15 C 0.571 3.429 16 O -0.519 6.519 17 C -0.159 4.159 18 C 0.155 3.845 19 F -0.114 7.114 20 C -0.135 4.135 21 C -0.084 4.084 22 C 0.059 3.941 23 F -0.119 7.119 24 C 0.131 3.869 25 F -0.106 7.106 26 C 0.081 3.919 27 H 0.258 0.742 28 H 0.388 0.612 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.161 0.839 34 H 0.162 0.838 35 H 0.077 0.923 36 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.774 -25.139 0.976 25.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.204 4.204 3 Si 0.740 3.260 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.383 4.383 8 H 0.091 0.909 9 N -0.351 5.351 10 C 0.061 3.939 11 H 0.086 0.914 12 C -0.177 4.177 13 C -0.025 4.025 14 N -0.329 5.329 15 C 0.356 3.644 16 O -0.395 6.395 17 C -0.165 4.165 18 C 0.134 3.866 19 F -0.092 7.092 20 C -0.154 4.154 21 C -0.102 4.102 22 C 0.038 3.962 23 F -0.098 7.098 24 C 0.109 3.891 25 F -0.084 7.084 26 C -0.044 4.044 27 H 0.068 0.932 28 H 0.222 0.778 29 H 0.098 0.902 30 H 0.103 0.897 31 H 0.091 0.909 32 H 0.086 0.914 33 H 0.178 0.822 34 H 0.180 0.820 35 H 0.095 0.905 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.022 -24.633 1.586 25.010 hybrid contribution -0.090 1.035 0.202 1.058 sum 3.932 -23.598 1.788 23.991 Atomic orbital electron populations 1.69649 1.05199 1.26119 1.56679 1.24780 0.95522 0.97888 1.02176 0.86241 0.78572 0.83222 0.77977 1.21098 1.21613 1.21056 1.19214 0.91125 0.83893 1.44045 0.90912 1.42371 1.05841 0.99373 1.87564 1.21214 0.94935 0.86410 0.91386 0.91366 1.23092 1.00342 0.93837 1.00447 1.22439 0.98903 0.97823 0.83287 1.48526 1.65311 1.09822 1.09268 1.17219 0.79109 0.84407 0.83638 1.90856 1.46677 1.72767 1.29248 1.19946 0.92710 0.96146 1.07671 1.17286 0.79935 0.91055 0.98325 1.91611 1.39261 1.87888 1.90476 1.21014 0.98601 0.92859 1.02885 1.21021 0.90435 1.01105 0.97678 1.17459 0.82782 0.89514 1.06425 1.91581 1.40114 1.86646 1.91447 1.17262 0.84387 0.86601 1.00813 1.91641 1.56322 1.71395 1.89071 1.23421 1.01694 0.76551 1.02693 0.93235 0.77787 0.90246 0.89683 0.90947 0.91384 0.82155 0.82041 0.90452 0.91883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.54 13.06 55.49 0.72 -26.81 16 2 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 3 Si 0.91 22.08 29.55 -169.99 -5.02 17.05 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.25 -6.79 9.98 -15.06 -0.15 -6.94 16 8 H 0.07 1.90 7.83 -52.49 -0.41 1.48 16 9 N -0.71 -17.15 5.18 -51.65 -0.27 -17.41 16 10 C 0.17 3.25 3.59 -66.10 -0.24 3.02 16 11 H 0.07 1.26 8.12 -51.93 -0.42 0.84 16 12 C -0.14 -2.04 6.71 -24.46 -0.16 -2.20 16 13 C 0.10 1.27 6.69 -2.41 -0.02 1.26 16 14 N -0.60 -9.85 3.32 -171.60 -0.57 -10.42 16 15 C 0.57 9.86 6.57 -12.46 -0.08 9.77 16 16 O -0.52 -10.97 17.43 5.29 0.09 -10.88 16 17 C -0.16 -2.09 4.53 -104.87 -0.48 -2.56 16 18 C 0.15 1.59 7.29 -38.98 -0.28 1.31 16 19 F -0.11 -1.34 16.83 2.25 0.04 -1.30 16 20 C -0.13 -0.85 10.01 -39.57 -0.40 -1.24 16 21 C -0.08 -0.49 10.01 -39.47 -0.39 -0.89 16 22 C 0.06 0.54 7.29 -39.43 -0.29 0.26 16 23 F -0.12 -1.19 17.18 2.25 0.04 -1.15 16 24 C 0.13 1.60 7.30 -38.90 -0.28 1.31 16 25 F -0.11 -1.55 16.74 2.25 0.04 -1.52 16 26 C 0.08 1.55 6.62 -3.06 -0.02 1.53 16 27 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 28 H 0.39 9.93 7.71 -40.82 -0.31 9.61 16 29 H 0.08 1.24 8.00 -51.93 -0.42 0.83 16 30 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.07 0.76 7.69 -51.93 -0.40 0.36 16 33 H 0.16 0.50 8.06 -52.49 -0.42 0.08 16 34 H 0.16 0.41 8.06 -52.48 -0.42 -0.01 16 35 H 0.08 1.70 8.03 -51.93 -0.42 1.29 16 36 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 LS Contribution 328.92 15.07 4.96 4.96 Total: -1.00 -32.79 328.92 -6.49 -39.28 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: -3.63 Total: 3.89 kcal Atomic # 6 Polarization: 7.21 SS G_CDS: -2.89 Total: 4.32 kcal Atomic # 7 Polarization: -54.54 SS G_CDS: -0.11 Total: -54.65 kcal Atomic # 8 Polarization: -10.97 SS G_CDS: 0.09 Total: -10.88 kcal Atomic # 9 Polarization: -4.09 SS G_CDS: 0.11 Total: -3.97 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -32.79 -6.49 -39.28 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969760927.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.445 kcal (2) G-P(sol) polarization free energy of solvation -32.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds