Wall clock time and date at job start Tue Mar 31 2020 10:57:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86809 * 119.99800 * 2 1 4 4 H 1.48498 * 109.46921 * 239.99787 * 3 2 1 5 5 H 1.48505 * 109.46983 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47177 * 119.99914 * 3 2 1 7 7 C 1.38813 * 120.00419 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00206 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99613 * 359.97438 * 7 2 1 10 10 C 1.46498 * 119.99544 * 180.02562 * 9 7 2 11 11 H 1.09003 * 110.64177 * 323.30871 * 10 9 7 12 12 C 1.55158 * 110.71498 * 199.97784 * 10 9 7 13 13 C 1.55135 * 101.48242 * 205.96898 * 12 10 9 14 14 N 1.47420 * 104.72403 * 37.29663 * 13 12 10 15 15 C 1.34777 * 125.64903 * 155.81752 * 14 13 12 16 16 O 1.21588 * 119.99809 * 179.68913 * 15 14 13 17 17 C 1.47546 * 120.00067 * 359.69318 * 15 14 13 18 18 C 1.39925 * 120.17953 * 89.97520 * 17 15 14 19 19 F 1.35102 * 120.07392 * 0.04677 * 18 17 15 20 20 C 1.38167 * 119.85282 * 180.02562 * 18 17 15 21 21 C 1.38336 * 120.21365 * 359.97438 * 20 18 17 22 22 C 1.38444 * 120.36203 * 0.04478 * 21 20 18 23 23 F 1.35100 * 119.93386 * 179.97438 * 22 21 20 24 24 C 1.38453 * 120.13755 * 359.95626 * 22 21 20 25 25 F 1.35103 * 120.10206 * 180.29529 * 24 22 21 26 26 C 1.47022 * 108.70223 * 335.55022 * 14 13 12 27 27 H 0.96996 * 119.99863 * 0.02562 * 1 2 3 28 28 H 0.96996 * 119.99967 * 0.02562 * 9 7 2 29 29 H 1.08995 * 111.00737 * 324.20768 * 12 10 9 30 30 H 1.08994 * 111.00636 * 88.06199 * 12 10 9 31 31 H 1.08998 * 110.49415 * 278.45106 * 13 12 10 32 32 H 1.09007 * 110.34296 * 156.05986 * 13 12 10 33 33 H 1.07999 * 119.89365 * 180.02562 * 20 18 17 34 34 H 1.08003 * 119.82421 * 180.02562 * 21 20 18 35 35 H 1.09004 * 109.88104 * 120.70553 * 26 14 13 36 36 H 1.08993 * 109.88463 * 241.71628 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6966 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0016 10 6 2.0582 -3.6567 0.0027 11 1 2.9587 -3.5810 -0.6068 12 6 1.1515 -4.8145 -0.4921 13 6 1.8069 -6.0378 0.2012 14 7 2.2232 -5.5399 1.5248 15 6 2.4088 -6.2953 2.6255 16 8 2.7599 -5.7758 3.6672 17 6 2.1860 -7.7526 2.5662 18 6 3.2377 -8.6119 2.2293 19 9 4.4621 -8.1094 1.9578 20 6 3.0214 -9.9755 2.1753 21 6 1.7692 -10.4932 2.4537 22 6 0.7222 -9.6512 2.7877 23 9 -0.4973 -10.1661 3.0574 24 6 0.9225 -8.2825 2.8461 25 9 -0.0983 -7.4619 3.1779 26 6 2.4086 -4.0837 1.4437 27 1 -0.4850 0.8400 -0.0004 28 1 0.3557 -2.3880 0.0016 29 1 0.1235 -4.6760 -0.1575 30 1 1.1981 -4.9110 -1.5767 31 1 2.6733 -6.3788 -0.3656 32 1 1.0822 -6.8448 0.3102 33 1 3.8328 -10.6393 1.9157 34 1 1.6072 -11.5601 2.4101 35 1 1.7442 -3.5855 2.1499 36 1 3.4446 -3.8289 1.6668 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969760927.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:57:14 Heat of formation + Delta-G solvation = -138.620567 kcal Electronic energy + Delta-G solvation = -25955.550377 eV Core-core repulsion = 21604.126829 eV Total energy + Delta-G solvation = -4351.423548 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 314.098 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -50.77938 -50.27531 -49.82385 -41.42551 -39.61386 -38.71457 -36.02156 -33.62262 -32.53968 -31.28302 -31.10535 -29.24436 -26.51255 -25.28517 -24.14967 -23.89005 -21.87839 -21.05294 -19.61314 -19.33327 -19.16085 -18.88879 -18.12438 -17.66227 -17.48193 -17.05990 -16.79514 -16.66312 -16.40488 -16.21232 -15.69013 -15.56510 -15.47824 -15.29872 -14.96710 -14.40737 -14.16940 -14.04493 -13.61493 -13.45851 -13.25348 -13.02738 -12.97416 -12.87808 -12.64289 -12.47788 -12.18608 -11.80403 -11.69774 -11.46010 -11.02585 -10.42972 -9.91273 -9.89212 -9.14533 -7.99494 -5.30481 -0.62890 -0.48207 1.06610 1.46238 1.49348 1.54941 1.61164 1.91075 2.32921 2.53052 2.71997 2.99159 3.16647 3.31806 3.44878 3.54628 3.57231 3.82485 3.89313 4.12434 4.23879 4.26668 4.42186 4.43668 4.54301 4.58446 4.69457 4.77440 4.80666 4.90047 5.04072 5.10900 5.29257 5.40596 5.48941 6.21292 6.21770 6.69631 7.28728 7.99372 8.22963 9.23179 Molecular weight = 314.10amu Principal moments of inertia in cm(-1) A = 0.023881 B = 0.003260 C = 0.003099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.216118 B = 8585.753023 C = 9031.809665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.070 4.070 3 Si 0.972 3.028 4 H -0.272 1.272 5 H -0.296 1.296 6 H -0.282 1.282 7 C -0.251 4.251 8 H 0.079 0.921 9 N -0.725 5.725 10 C 0.168 3.832 11 H 0.079 0.921 12 C -0.127 4.127 13 C 0.103 3.897 14 N -0.599 5.599 15 C 0.566 3.434 16 O -0.575 6.575 17 C -0.182 4.182 18 C 0.146 3.854 19 F -0.126 7.126 20 C -0.102 4.102 21 C -0.050 4.050 22 C 0.061 3.939 23 F -0.124 7.124 24 C 0.103 3.897 25 F -0.133 7.133 26 C 0.091 3.909 27 H 0.253 0.747 28 H 0.376 0.624 29 H 0.066 0.934 30 H 0.113 0.887 31 H 0.104 0.896 32 H 0.091 0.909 33 H 0.207 0.793 34 H 0.211 0.789 35 H 0.036 0.964 36 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.206 -29.047 -0.444 29.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.616 5.616 2 C -0.262 4.262 3 Si 0.801 3.199 4 H -0.198 1.198 5 H -0.222 1.222 6 H -0.209 1.209 7 C -0.382 4.382 8 H 0.097 0.903 9 N -0.363 5.363 10 C 0.058 3.942 11 H 0.097 0.903 12 C -0.166 4.166 13 C -0.018 4.018 14 N -0.330 5.330 15 C 0.353 3.647 16 O -0.455 6.455 17 C -0.187 4.187 18 C 0.125 3.875 19 F -0.104 7.104 20 C -0.121 4.121 21 C -0.068 4.068 22 C 0.041 3.959 23 F -0.103 7.103 24 C 0.082 3.918 25 F -0.111 7.111 26 C -0.035 4.035 27 H 0.061 0.939 28 H 0.209 0.791 29 H 0.085 0.915 30 H 0.132 0.868 31 H 0.122 0.878 32 H 0.110 0.890 33 H 0.224 0.776 34 H 0.228 0.772 35 H 0.055 0.945 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 5.482 -28.603 0.133 29.124 hybrid contribution -0.496 2.081 0.672 2.242 sum 4.986 -26.522 0.805 26.999 Atomic orbital electron populations 1.69802 1.06644 1.26339 1.58863 1.25576 0.96342 1.01173 1.03141 0.85235 0.77262 0.79149 0.78248 1.19757 1.22177 1.20866 1.19619 0.91616 0.85062 1.41946 0.90283 1.42527 1.05512 1.00588 1.87722 1.21426 0.95909 0.85779 0.91115 0.90264 1.23036 0.98753 0.92518 1.02243 1.22668 1.00559 0.97368 0.81239 1.48604 1.64948 1.08602 1.10849 1.17934 0.77653 0.86406 0.82674 1.90804 1.49095 1.74467 1.31156 1.19615 0.94383 0.93417 1.11273 1.17599 0.78707 0.92296 0.98853 1.91586 1.39821 1.88344 1.90668 1.21509 0.99830 0.91032 0.99680 1.21589 0.88609 1.02777 0.93867 1.17668 0.83509 0.88468 1.06302 1.91577 1.40757 1.86404 1.91523 1.17552 0.83660 0.87739 1.02843 1.91566 1.57386 1.72479 1.89719 1.22992 0.99978 0.78646 1.01869 0.93875 0.79112 0.91540 0.86823 0.87842 0.89046 0.77601 0.77180 0.94504 0.92870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.08 13.06 21.65 0.28 -58.80 16 2 C -0.07 -3.98 5.50 84.86 0.47 -3.51 16 3 Si 0.97 46.19 29.55 68.60 2.03 48.22 16 4 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 5 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 6 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 7 C -0.25 -13.79 9.98 84.03 0.84 -12.95 16 8 H 0.08 4.15 7.83 -2.91 -0.02 4.13 16 9 N -0.72 -35.94 5.18 -317.33 -1.64 -37.58 16 10 C 0.17 6.39 3.59 46.18 0.17 6.56 16 11 H 0.08 2.86 8.12 -2.39 -0.02 2.84 16 12 C -0.13 -3.61 6.71 32.07 0.22 -3.40 16 13 C 0.10 2.49 6.69 86.94 0.58 3.07 16 14 N -0.60 -20.19 3.32 -815.08 -2.71 -22.90 16 15 C 0.57 20.26 6.57 86.70 0.57 20.83 16 16 O -0.57 -25.97 17.43 -3.99 -0.07 -26.04 16 17 C -0.18 -4.65 4.53 -20.02 -0.09 -4.74 16 18 C 0.15 2.60 7.29 22.66 0.17 2.77 16 19 F -0.13 -2.70 16.83 44.97 0.76 -1.94 16 20 C -0.10 -0.71 10.01 22.28 0.22 -0.49 16 21 C -0.05 -0.30 10.01 22.34 0.22 -0.08 16 22 C 0.06 0.95 7.29 22.37 0.16 1.11 16 23 F -0.12 -2.18 17.18 44.97 0.77 -1.40 16 24 C 0.10 2.45 7.30 22.71 0.17 2.62 16 25 F -0.13 -4.07 16.74 44.97 0.75 -3.32 16 26 C 0.09 3.65 6.62 86.73 0.57 4.23 16 27 H 0.25 15.02 8.31 -92.71 -0.77 14.25 16 28 H 0.38 20.08 7.71 -92.71 -0.72 19.37 16 29 H 0.07 2.08 8.00 -2.39 -0.02 2.06 16 30 H 0.11 2.62 8.14 -2.39 -0.02 2.60 16 31 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.09 1.84 7.69 -2.38 -0.02 1.82 16 33 H 0.21 -0.31 8.06 -2.91 -0.02 -0.33 16 34 H 0.21 -0.63 8.06 -2.91 -0.02 -0.65 16 35 H 0.04 1.76 8.03 -2.38 -0.02 1.74 16 36 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 Total: -1.00 -78.17 328.92 4.86 -73.31 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: 0.43 Total: 14.43 kcal Atomic # 6 Polarization: 11.76 SS G_CDS: 4.26 Total: 16.02 kcal Atomic # 7 Polarization: -115.21 SS G_CDS: -4.07 Total: -119.28 kcal Atomic # 8 Polarization: -25.97 SS G_CDS: -0.07 Total: -26.04 kcal Atomic # 9 Polarization: -8.95 SS G_CDS: 2.28 Total: -6.66 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 2.03 Total: 48.22 kcal Total: -78.17 4.86 -73.31 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969760927.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.308 kcal (2) G-P(sol) polarization free energy of solvation -78.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds