Wall clock time and date at job start Tue Mar 31 2020 10:57:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86799 * 119.99648 * 2 1 4 4 H 1.48501 * 109.47335 * 245.29130 * 3 2 1 5 5 H 1.48504 * 109.47487 * 5.29043 * 3 2 1 6 6 H 1.48496 * 109.47478 * 125.29053 * 3 2 1 7 7 C 1.38804 * 120.00008 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00186 * 345.60773 * 7 2 1 9 9 N 1.36945 * 119.99858 * 165.61387 * 7 2 1 10 10 C 1.47024 * 125.64529 * 348.96917 * 9 7 2 11 11 C 1.54321 * 107.26902 * 181.02795 * 10 9 7 12 12 C 1.55155 * 102.94327 * 22.18783 * 11 10 9 13 13 H 1.09004 * 111.00156 * 82.57757 * 12 11 10 14 14 N 1.46498 * 111.00677 * 206.38624 * 12 11 10 15 15 C 1.34780 * 120.00147 * 205.00367 * 14 12 11 16 16 O 1.21595 * 120.00084 * 0.02562 * 15 14 12 17 17 C 1.47424 * 119.99801 * 180.02562 * 15 14 12 18 18 C 1.39969 * 120.16383 * 89.72508 * 17 15 14 19 19 F 1.35102 * 120.08647 * 0.02562 * 18 17 15 20 20 C 1.38109 * 119.83116 * 179.71844 * 18 17 15 21 21 C 1.38597 * 120.16424 * 0.55777 * 20 18 17 22 22 F 1.35097 * 119.83273 * 179.74674 * 21 20 18 23 23 C 1.38596 * 120.32761 * 359.71585 * 21 20 18 24 24 C 1.38099 * 120.17133 * 0.02562 * 23 21 20 25 25 F 1.35097 * 120.09054 * 180.02562 * 24 23 21 26 26 C 1.47423 * 125.64835 * 168.66524 * 9 7 2 27 27 H 0.97003 * 120.00039 * 174.92649 * 1 2 3 28 28 H 1.09007 * 109.87907 * 300.43980 * 10 9 7 29 29 H 1.08997 * 109.88679 * 61.60513 * 10 9 7 30 30 H 1.08998 * 110.72053 * 140.55626 * 11 10 9 31 31 H 1.09003 * 110.71906 * 263.64965 * 11 10 9 32 32 H 0.97003 * 119.99916 * 25.00458 * 14 12 11 33 33 H 1.07997 * 119.91343 * 180.27748 * 20 18 17 34 34 H 1.08007 * 119.91805 * 179.97438 * 23 21 20 35 35 H 1.09002 * 110.36342 * 274.74512 * 26 9 7 36 36 H 1.08997 * 110.36760 * 37.06374 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.0044 1.7539 -1.2719 5 1 1.2902 2.7435 0.1291 6 1 3.1981 1.6422 1.1427 7 6 2.0102 -1.2021 0.0005 8 1 1.4957 -2.1226 0.2334 9 7 3.3475 -1.2208 -0.2941 10 6 4.1190 -0.0975 -0.8461 11 6 5.5699 -0.5878 -1.0360 12 6 5.4089 -2.1291 -1.1111 13 1 5.1277 -2.4440 -2.1161 14 7 6.6321 -2.8068 -0.6746 15 6 6.9063 -4.0513 -1.1134 16 8 6.1387 -4.6115 -1.8720 17 6 8.1371 -4.7334 -0.6736 18 6 8.1302 -5.5188 0.4850 19 9 6.9948 -5.6549 1.2043 20 6 9.2856 -6.1595 0.8875 21 6 10.4528 -6.0169 0.1537 22 9 11.5804 -6.6425 0.5564 23 6 10.4686 -5.2363 -0.9914 24 6 9.3198 -4.5938 -1.4093 25 9 9.3369 -3.8337 -2.5260 26 6 4.2531 -2.3685 -0.1045 27 1 -0.4850 -0.8368 -0.0743 28 1 3.7005 0.2030 -1.8067 29 1 4.0993 0.7425 -0.1518 30 1 5.9903 -0.1983 -1.9632 31 1 6.1878 -0.3029 -0.1844 32 1 7.2447 -2.3598 -0.0697 33 1 9.2807 -6.7694 1.7787 34 1 11.3819 -5.1294 -1.5579 35 1 4.6339 -2.3865 0.9167 36 1 3.7373 -3.3007 -0.3344 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001015637052.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:57:56 Heat of formation + Delta-G solvation = -125.651032 kcal Electronic energy + Delta-G solvation = -25704.629330 eV Core-core repulsion = 21353.768184 eV Total energy + Delta-G solvation = -4350.861147 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 314.098 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.39752 -50.36580 -50.25260 -41.34990 -39.71686 -38.96174 -35.88721 -34.26561 -32.39858 -31.88915 -31.11398 -29.58280 -26.22968 -25.05850 -24.46203 -22.78490 -22.43703 -21.79535 -19.95240 -19.74667 -19.17294 -19.06409 -17.99519 -17.41938 -17.27516 -17.17099 -17.07656 -16.65026 -16.58734 -16.43298 -16.02639 -15.81140 -15.51645 -15.44121 -15.33882 -14.45545 -14.21918 -14.12776 -13.89174 -13.56258 -13.29173 -13.14163 -13.09317 -12.91120 -12.58965 -12.36000 -11.82076 -11.46070 -11.43061 -11.08183 -10.75058 -10.36341 -10.20944 -10.20197 -9.15303 -8.70629 -5.53990 -0.69828 -0.43374 1.11089 1.40558 1.51621 1.66738 1.75583 1.87609 2.20242 2.55810 2.85182 2.91642 3.06398 3.16428 3.35490 3.44812 3.54945 3.62987 3.77416 4.01351 4.24367 4.33212 4.36715 4.38888 4.41866 4.42491 4.65232 4.72327 4.75979 4.81114 4.89358 5.10636 5.27414 5.34697 5.49293 6.04334 6.21500 6.77104 6.88264 7.36534 8.01734 8.82094 Molecular weight = 314.10amu Principal moments of inertia in cm(-1) A = 0.027647 B = 0.003143 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.537756 B = 8907.835299 C = 9316.572497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.962 5.962 2 C -0.080 4.080 3 Si 1.114 2.886 4 H -0.244 1.244 5 H -0.313 1.313 6 H -0.277 1.277 7 C -0.319 4.319 8 H 0.037 0.963 9 N -0.632 5.632 10 C 0.097 3.903 11 C -0.115 4.115 12 C 0.141 3.859 13 H 0.086 0.914 14 N -0.686 5.686 15 C 0.564 3.436 16 O -0.563 6.563 17 C -0.222 4.222 18 C 0.184 3.816 19 F -0.125 7.125 20 C -0.184 4.184 21 C 0.190 3.810 22 F -0.111 7.111 23 C -0.181 4.181 24 C 0.192 3.808 25 F -0.118 7.118 26 C 0.126 3.874 27 H 0.246 0.754 28 H 0.041 0.959 29 H 0.038 0.962 30 H 0.112 0.888 31 H 0.107 0.893 32 H 0.421 0.579 33 H 0.187 0.813 34 H 0.192 0.808 35 H 0.038 0.962 36 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.389 -9.329 0.457 32.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.606 5.606 2 C -0.272 4.272 3 Si 0.940 3.060 4 H -0.168 1.168 5 H -0.242 1.242 6 H -0.204 1.204 7 C -0.447 4.447 8 H 0.055 0.945 9 N -0.360 5.360 10 C -0.027 4.027 11 C -0.153 4.153 12 C 0.035 3.965 13 H 0.104 0.896 14 N -0.338 5.338 15 C 0.349 3.651 16 O -0.442 6.442 17 C -0.228 4.228 18 C 0.164 3.836 19 F -0.103 7.103 20 C -0.204 4.204 21 C 0.170 3.830 22 F -0.089 7.089 23 C -0.200 4.200 24 C 0.172 3.828 25 F -0.097 7.097 26 C 0.000 4.000 27 H 0.054 0.946 28 H 0.059 0.941 29 H 0.055 0.945 30 H 0.130 0.870 31 H 0.125 0.875 32 H 0.259 0.741 33 H 0.205 0.795 34 H 0.210 0.790 35 H 0.056 0.944 36 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 30.574 -8.113 -0.008 31.632 hybrid contribution -0.895 -1.989 0.354 2.210 sum 29.679 -10.102 0.347 31.353 Atomic orbital electron populations 1.71005 1.07090 1.28390 1.54130 1.27392 0.96463 1.04904 0.98483 0.83380 0.72613 0.71130 0.78866 1.16834 1.24184 1.20388 1.20051 0.84009 0.94755 1.45895 0.94473 1.44762 1.05003 1.11010 1.75240 1.22229 0.92412 0.91235 0.96810 1.22846 0.95126 0.91806 1.05473 1.22002 0.83352 0.93318 0.97813 0.89609 1.45718 1.23748 1.15317 1.48974 1.18137 0.85035 0.81764 0.80119 1.90854 1.50351 1.66086 1.36871 1.19823 0.94841 1.08025 1.00085 1.16919 0.82992 0.95519 0.88181 1.91619 1.48802 1.93775 1.76109 1.21196 0.89668 1.04640 1.04858 1.16850 0.82097 0.91763 0.92299 1.91627 1.48172 1.79441 1.89698 1.21208 0.99777 1.00211 0.98802 1.16786 0.91630 0.91334 0.83091 1.91610 1.96865 1.72680 1.48499 1.21988 0.90906 0.90035 0.97097 0.94551 0.94076 0.94517 0.86991 0.87453 0.74084 0.79547 0.79038 0.94441 0.96326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -63.81 13.70 21.65 0.30 -63.52 16 2 C -0.08 -4.92 5.50 84.86 0.47 -4.45 16 3 Si 1.11 53.21 24.53 68.60 1.68 54.90 16 4 H -0.24 -9.98 5.43 99.48 0.54 -9.44 16 5 H -0.31 -15.44 7.11 99.48 0.71 -14.74 16 6 H -0.28 -12.16 6.84 99.48 0.68 -11.48 16 7 C -0.32 -19.40 10.56 84.03 0.89 -18.51 16 8 H 0.04 2.49 8.06 -2.91 -0.02 2.46 16 9 N -0.63 -31.59 3.32 -691.57 -2.30 -33.88 16 10 C 0.10 3.90 4.61 86.73 0.40 4.30 16 11 C -0.11 -3.12 6.59 31.78 0.21 -2.91 16 12 C 0.14 4.55 3.44 46.46 0.16 4.71 16 13 H 0.09 3.14 7.54 -2.38 -0.02 3.13 16 14 N -0.69 -17.25 5.19 -438.87 -2.28 -19.53 16 15 C 0.56 16.19 6.53 86.66 0.57 16.76 16 16 O -0.56 -21.80 16.75 -4.01 -0.07 -21.87 16 17 C -0.22 -4.55 5.64 -20.02 -0.11 -4.66 16 18 C 0.18 3.26 7.29 22.66 0.17 3.43 16 19 F -0.12 -2.87 16.83 44.97 0.76 -2.11 16 20 C -0.18 -1.96 9.99 22.33 0.22 -1.74 16 21 C 0.19 1.72 7.30 22.44 0.16 1.88 16 22 F -0.11 -0.99 17.26 44.97 0.78 -0.21 16 23 C -0.18 -1.64 9.98 22.32 0.22 -1.42 16 24 C 0.19 2.99 7.29 22.66 0.17 3.15 16 25 F -0.12 -2.17 16.83 44.97 0.76 -1.42 16 26 C 0.13 5.33 6.94 86.93 0.60 5.93 16 27 H 0.25 16.49 8.73 -92.71 -0.81 15.68 16 28 H 0.04 1.73 6.79 -2.38 -0.02 1.71 16 29 H 0.04 1.49 3.82 -2.39 -0.01 1.48 16 30 H 0.11 2.38 8.14 -2.39 -0.02 2.36 16 31 H 0.11 2.24 8.01 -2.39 -0.02 2.22 16 32 H 0.42 7.29 8.56 -92.71 -0.79 6.50 16 33 H 0.19 1.10 8.06 -2.91 -0.02 1.08 16 34 H 0.19 0.65 8.06 -2.91 -0.02 0.63 16 35 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 Total: -1.00 -81.11 317.48 3.88 -77.23 By element: Atomic # 1 Polarization: 3.81 SS G_CDS: 0.13 Total: 3.94 kcal Atomic # 6 Polarization: 2.35 SS G_CDS: 4.12 Total: 6.47 kcal Atomic # 7 Polarization: -112.65 SS G_CDS: -4.28 Total: -116.93 kcal Atomic # 8 Polarization: -21.80 SS G_CDS: -0.07 Total: -21.87 kcal Atomic # 9 Polarization: -6.03 SS G_CDS: 2.29 Total: -3.74 kcal Atomic # 14 Polarization: 53.21 SS G_CDS: 1.68 Total: 54.90 kcal Total: -81.11 3.88 -77.23 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015637052.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.419 kcal (2) G-P(sol) polarization free energy of solvation -81.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds