Wall clock time and date at job start Tue Mar 31 2020 10:57:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86807 * 120.00052 * 2 1 4 4 H 1.48503 * 109.47035 * 240.00011 * 3 2 1 5 5 H 1.48501 * 109.46894 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47033 * 120.00530 * 3 2 1 7 7 C 1.38810 * 120.00424 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00599 * 179.97438 * 7 2 1 9 9 N 1.36943 * 119.99393 * 359.97438 * 7 2 1 10 10 C 1.46501 * 119.99850 * 180.02562 * 9 7 2 11 11 H 1.08998 * 110.91614 * 37.44480 * 10 9 7 12 12 C 1.55158 * 111.00617 * 161.34932 * 10 9 7 13 13 C 1.54316 * 102.94139 * 153.57407 * 12 10 9 14 14 N 1.47020 * 107.27568 * 337.80546 * 13 12 10 15 15 C 1.34776 * 125.65281 * 178.97789 * 14 13 12 16 16 O 1.21587 * 120.00115 * 179.97438 * 15 14 13 17 17 C 1.47548 * 119.99803 * 359.95951 * 15 14 13 18 18 C 1.39932 * 120.17692 * 270.00332 * 17 15 14 19 19 F 1.35108 * 120.07203 * 359.97438 * 18 17 15 20 20 C 1.38168 * 119.85266 * 180.02562 * 18 17 15 21 21 C 1.38334 * 120.21443 * 359.97438 * 20 18 17 22 22 C 1.38447 * 120.35876 * 0.02562 * 21 20 18 23 23 F 1.35099 * 119.92910 * 179.97438 * 22 21 20 24 24 C 1.38444 * 120.13995 * 359.71609 * 22 21 20 25 25 F 1.35100 * 120.10675 * 180.30167 * 24 22 21 26 26 C 1.47422 * 108.70191 * 358.94070 * 14 13 12 27 27 H 0.97002 * 119.99875 * 359.97438 * 1 2 3 28 28 H 0.97001 * 120.00183 * 0.02562 * 9 7 2 29 29 H 1.09003 * 110.71801 * 271.93929 * 12 10 9 30 30 H 1.08999 * 110.71744 * 35.02967 * 12 10 9 31 31 H 1.09000 * 109.88340 * 97.22892 * 13 12 10 32 32 H 1.09005 * 109.88355 * 218.23652 * 13 12 10 33 33 H 1.08003 * 119.89450 * 179.97438 * 20 18 17 34 34 H 1.08005 * 119.82127 * 180.02562 * 21 20 18 35 35 H 1.08998 * 110.36873 * 265.28987 * 26 14 13 36 36 H 1.09005 * 110.36491 * 142.96394 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 1 2.9527 -3.5896 0.6185 12 6 1.1476 -4.8246 0.4627 13 6 1.7842 -6.0519 -0.2227 14 7 2.5591 -5.5580 -1.3704 15 6 3.2825 -6.3187 -2.2157 16 8 3.8860 -5.8003 -3.1351 17 6 3.3423 -7.7806 -2.0251 18 6 4.3406 -8.3452 -1.2234 19 9 5.2541 -7.5526 -0.6211 20 6 4.3907 -9.7150 -1.0500 21 6 3.4571 -10.5293 -1.6658 22 6 2.4657 -9.9801 -2.4608 23 9 1.5587 -10.7835 -3.0585 24 6 2.3985 -8.6090 -2.6404 25 9 1.4270 -8.0733 -3.4115 26 6 2.4131 -4.0929 -1.4440 27 1 -0.4850 0.8401 0.0004 28 1 0.3555 -2.3880 -0.0005 29 1 1.1773 -4.9299 1.5472 30 1 0.1240 -4.6753 0.1190 31 1 2.4438 -6.5662 0.4762 32 1 1.0039 -6.7320 -0.5645 33 1 5.1611 -10.1515 -0.4317 34 1 3.5020 -11.5992 -1.5255 35 1 1.6089 -3.8258 -2.1296 36 1 3.3500 -3.6337 -1.7595 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001019306530.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:57:18 Heat of formation + Delta-G solvation = -138.775144 kcal Electronic energy + Delta-G solvation = -25913.402127 eV Core-core repulsion = 21561.971876 eV Total energy + Delta-G solvation = -4351.430251 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 314.098 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -50.77719 -50.27527 -49.82106 -41.42879 -39.61488 -38.71201 -36.03289 -33.63155 -32.53879 -31.28281 -31.13264 -29.25418 -26.51862 -25.28366 -24.14297 -23.87370 -21.85534 -21.11235 -19.62326 -19.35726 -19.15870 -18.89333 -18.10248 -17.64514 -17.46845 -17.07798 -16.79562 -16.65239 -16.33140 -16.20779 -15.70549 -15.56145 -15.52627 -15.23966 -14.90940 -14.45886 -14.18254 -14.04211 -13.89052 -13.46634 -13.20129 -13.03309 -12.97090 -12.87949 -12.63867 -12.41629 -12.14656 -11.82147 -11.70810 -11.45599 -11.02861 -10.43412 -9.92873 -9.88720 -9.13059 -7.99977 -5.30674 -0.62640 -0.47913 1.06088 1.46349 1.49032 1.54683 1.60145 1.91293 2.32586 2.52806 2.71906 2.98850 3.16816 3.31453 3.45215 3.52568 3.57367 3.83403 3.94357 4.12406 4.16761 4.25031 4.42055 4.45445 4.56505 4.58420 4.69754 4.73567 4.80754 4.89480 5.00585 5.11219 5.28324 5.40659 5.48656 6.20267 6.22249 6.68670 7.29108 7.98760 8.23692 9.22378 Molecular weight = 314.10amu Principal moments of inertia in cm(-1) A = 0.025128 B = 0.003178 C = 0.003061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.015994 B = 8808.804145 C = 9145.688946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.964 5.964 2 C -0.066 4.066 3 Si 0.971 3.029 4 H -0.283 1.283 5 H -0.293 1.293 6 H -0.274 1.274 7 C -0.252 4.252 8 H 0.075 0.925 9 N -0.722 5.722 10 C 0.168 3.832 11 H 0.067 0.933 12 C -0.125 4.125 13 C 0.104 3.896 14 N -0.599 5.599 15 C 0.568 3.432 16 O -0.573 6.573 17 C -0.182 4.182 18 C 0.144 3.856 19 F -0.127 7.127 20 C -0.103 4.103 21 C -0.051 4.051 22 C 0.061 3.939 23 F -0.124 7.124 24 C 0.106 3.894 25 F -0.132 7.132 26 C 0.090 3.910 27 H 0.253 0.747 28 H 0.379 0.621 29 H 0.108 0.892 30 H 0.076 0.924 31 H 0.096 0.904 32 H 0.085 0.915 33 H 0.206 0.794 34 H 0.211 0.789 35 H 0.051 0.949 36 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.810 -28.405 1.992 29.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.613 5.613 2 C -0.259 4.259 3 Si 0.799 3.201 4 H -0.209 1.209 5 H -0.219 1.219 6 H -0.200 1.200 7 C -0.384 4.384 8 H 0.093 0.907 9 N -0.361 5.361 10 C 0.058 3.942 11 H 0.085 0.915 12 C -0.164 4.164 13 C -0.017 4.017 14 N -0.331 5.331 15 C 0.355 3.645 16 O -0.453 6.453 17 C -0.187 4.187 18 C 0.124 3.876 19 F -0.105 7.105 20 C -0.121 4.121 21 C -0.069 4.069 22 C 0.041 3.959 23 F -0.102 7.102 24 C 0.085 3.915 25 F -0.110 7.110 26 C -0.036 4.036 27 H 0.062 0.938 28 H 0.212 0.788 29 H 0.127 0.873 30 H 0.095 0.905 31 H 0.114 0.886 32 H 0.103 0.897 33 H 0.223 0.777 34 H 0.228 0.772 35 H 0.069 0.931 36 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 7.228 -27.982 1.471 28.938 hybrid contribution -0.433 1.901 -0.828 2.119 sum 6.795 -26.081 0.643 26.959 Atomic orbital electron populations 1.69786 1.06489 1.26388 1.58685 1.25530 0.96355 1.00995 1.03028 0.85264 0.77319 0.79305 0.78182 1.20908 1.21945 1.19985 1.19563 0.91462 0.85140 1.42204 0.90747 1.42412 1.05551 1.00335 1.87768 1.21453 0.95464 0.85831 0.91500 0.91479 1.22833 0.99186 0.92107 1.02228 1.22274 0.95365 0.97379 0.86712 1.48558 1.47037 1.08348 1.29112 1.17889 0.78769 0.86421 0.81381 1.90805 1.46628 1.74734 1.33154 1.19620 1.00345 0.92915 1.05819 1.17629 0.86785 0.89927 0.93308 1.91593 1.63819 1.74464 1.80651 1.21504 1.01409 0.88130 1.01105 1.21583 0.89541 1.04100 0.91639 1.17646 0.93145 0.84659 1.00455 1.91577 1.65115 1.71693 1.81824 1.17496 0.88210 0.90711 0.95107 1.91559 1.60155 1.86799 1.72488 1.23164 1.00199 0.78281 1.01951 0.93780 0.78773 0.87326 0.90497 0.88578 0.89721 0.77728 0.77213 0.93103 0.93167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.05 13.06 21.65 0.28 -57.77 16 2 C -0.07 -3.76 5.50 84.86 0.47 -3.29 16 3 Si 0.97 46.07 29.55 68.60 2.03 48.10 16 4 H -0.28 -13.22 7.11 99.48 0.71 -12.52 16 5 H -0.29 -13.96 7.11 99.48 0.71 -13.26 16 6 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 7 C -0.25 -13.87 9.98 84.03 0.84 -13.03 16 8 H 0.07 3.98 7.83 -2.91 -0.02 3.96 16 9 N -0.72 -35.42 5.28 -316.36 -1.67 -37.09 16 10 C 0.17 6.47 3.69 46.39 0.17 6.64 16 11 H 0.07 2.58 8.13 -2.39 -0.02 2.56 16 12 C -0.13 -3.51 6.58 31.78 0.21 -3.30 16 13 C 0.10 2.55 6.47 86.73 0.56 3.12 16 14 N -0.60 -20.05 3.33 -815.53 -2.71 -22.76 16 15 C 0.57 20.01 6.57 86.70 0.57 20.58 16 16 O -0.57 -25.39 17.36 -3.99 -0.07 -25.46 16 17 C -0.18 -4.58 4.82 -20.02 -0.10 -4.68 16 18 C 0.14 2.60 7.29 22.66 0.17 2.77 16 19 F -0.13 -2.82 16.83 44.97 0.76 -2.06 16 20 C -0.10 -0.74 10.01 22.28 0.22 -0.51 16 21 C -0.05 -0.30 10.01 22.34 0.22 -0.07 16 22 C 0.06 0.92 7.29 22.37 0.16 1.08 16 23 F -0.12 -2.07 17.18 44.97 0.77 -1.29 16 24 C 0.11 2.42 7.29 22.71 0.17 2.59 16 25 F -0.13 -3.80 16.74 44.97 0.75 -3.05 16 26 C 0.09 3.60 6.60 86.86 0.57 4.17 16 27 H 0.25 14.85 8.31 -92.71 -0.77 14.08 16 28 H 0.38 19.69 7.71 -92.71 -0.71 18.97 16 29 H 0.11 2.53 8.14 -2.39 -0.02 2.51 16 30 H 0.08 2.24 7.99 -2.39 -0.02 2.22 16 31 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.08 1.79 8.14 -2.38 -0.02 1.77 16 33 H 0.21 -0.22 8.06 -2.91 -0.02 -0.24 16 34 H 0.21 -0.65 8.06 -2.91 -0.02 -0.68 16 35 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 36 H 0.05 2.22 8.04 -2.38 -0.02 2.20 16 Total: -1.00 -76.24 329.43 4.81 -71.44 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: 0.43 Total: 13.88 kcal Atomic # 6 Polarization: 11.83 SS G_CDS: 4.23 Total: 16.06 kcal Atomic # 7 Polarization: -113.53 SS G_CDS: -4.10 Total: -117.63 kcal Atomic # 8 Polarization: -25.39 SS G_CDS: -0.07 Total: -25.46 kcal Atomic # 9 Polarization: -8.68 SS G_CDS: 2.28 Total: -6.40 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.10 kcal Total: -76.24 4.81 -71.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019306530.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.339 kcal (2) G-P(sol) polarization free energy of solvation -76.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds