Wall clock time and date at job start Tue Mar 31 2020 10:58:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86794 * 120.00104 * 2 1 4 4 H 1.48505 * 109.47228 * 270.00607 * 3 2 1 5 5 H 1.48493 * 109.47264 * 30.00321 * 3 2 1 6 6 H 1.48500 * 109.46981 * 150.00807 * 3 2 1 7 7 C 1.38816 * 119.99803 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99543 * 359.97438 * 7 2 1 9 9 N 1.36940 * 119.99761 * 179.97438 * 7 2 1 10 10 C 1.46502 * 119.99416 * 179.97438 * 9 7 2 11 11 H 1.09000 * 110.88613 * 37.43228 * 10 9 7 12 12 C 1.55407 * 111.06462 * 161.21027 * 10 9 7 13 13 C 1.54326 * 102.82496 * 153.48862 * 12 10 9 14 14 N 1.47015 * 107.40274 * 337.97595 * 13 12 10 15 15 C 1.34779 * 125.64886 * 178.82928 * 14 13 12 16 16 O 1.21564 * 120.00082 * 174.82160 * 15 14 13 17 17 C 1.47735 * 119.99793 * 354.82511 * 15 14 13 18 18 C 1.39629 * 120.10062 * 7.69335 * 17 15 14 19 19 C 1.38079 * 119.89691 * 179.74630 * 18 17 15 20 20 F 1.35093 * 119.94765 * 180.25006 * 19 18 17 21 21 C 1.38791 * 120.09743 * 0.52773 * 19 18 17 22 22 F 1.35097 * 119.89390 * 179.70504 * 21 19 18 23 23 C 1.38782 * 120.20405 * 359.72250 * 21 19 18 24 24 F 1.35095 * 119.94794 * 180.02562 * 23 21 19 25 25 C 1.38074 * 120.09971 * 0.02562 * 23 21 19 26 26 C 1.47423 * 108.70704 * 358.86210 * 14 13 12 27 27 H 0.97005 * 119.99958 * 359.97438 * 1 2 3 28 28 H 0.96998 * 120.00382 * 359.97438 * 9 7 2 29 29 H 1.08996 * 110.69909 * 35.20022 * 12 10 9 30 30 H 1.09003 * 110.85242 * 271.84710 * 12 10 9 31 31 H 1.09003 * 109.87985 * 218.47711 * 13 12 10 32 32 H 1.09002 * 109.88091 * 97.47431 * 13 12 10 33 33 H 1.07998 * 120.04990 * 359.97275 * 18 17 15 34 34 H 1.08005 * 120.05003 * 179.97438 * 25 23 21 35 35 H 1.08997 * 110.36837 * 142.96376 * 26 14 13 36 36 H 1.08999 * 110.37104 * 265.18624 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4400 0.6999 7 6 2.0102 -1.2022 -0.0005 8 1 1.4701 -2.1374 -0.0005 9 7 3.3796 -1.2022 -0.0011 10 6 4.1120 -2.4710 -0.0011 11 1 3.6057 -3.2120 -0.6197 12 6 5.5801 -2.2685 -0.4688 13 6 6.3228 -3.4329 0.2200 14 7 5.5080 -3.8561 1.3682 15 6 5.8043 -4.8639 2.2127 16 8 5.1047 -5.0669 3.1859 17 6 6.9793 -5.7217 1.9557 18 6 7.8743 -5.3958 0.9347 19 6 8.9740 -6.1977 0.7016 20 9 9.8433 -5.8806 -0.2827 21 6 9.1844 -7.3320 1.4732 22 9 10.2585 -8.1168 1.2376 23 6 8.2946 -7.6626 2.4856 24 9 8.5047 -8.7676 3.2338 25 6 7.1951 -6.8639 2.7293 26 6 4.3128 -2.9963 1.4424 27 1 -0.4850 0.8401 0.0004 28 1 3.8647 -0.3622 -0.0014 29 1 5.9651 -1.3085 -0.1250 30 1 5.6567 -2.3500 -1.5531 31 1 7.3012 -3.0969 0.5634 32 1 6.4397 -4.2623 -0.4776 33 1 7.7087 -4.5160 0.3307 34 1 6.5029 -7.1221 3.5172 35 1 3.4465 -3.5774 1.7584 36 1 4.4838 -2.1673 2.1291 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001019418561.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:21 Heat of formation + Delta-G solvation = -112.104976 kcal Electronic energy + Delta-G solvation = -25438.699939 eV Core-core repulsion = 21088.426194 eV Total energy + Delta-G solvation = -4350.273745 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 314.098 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.97420 -50.34442 -49.65250 -41.76008 -39.53236 -38.66049 -36.17256 -33.76587 -32.33627 -31.89625 -31.37122 -29.28972 -26.49737 -25.10591 -24.50417 -23.58553 -21.96359 -21.24546 -19.88495 -19.43757 -19.04115 -18.96696 -18.00298 -17.69079 -17.53212 -16.80815 -16.63425 -16.61753 -16.38146 -16.12373 -16.08355 -15.59227 -15.53512 -15.39057 -14.75689 -14.57064 -14.30958 -14.14837 -13.80272 -13.70637 -13.34958 -13.06364 -13.01482 -12.91965 -12.46495 -12.07775 -11.96029 -11.82522 -11.53184 -11.30875 -11.00771 -10.25147 -10.22478 -9.79024 -9.36279 -8.01986 -5.38490 -0.93317 -0.47775 1.25755 1.41118 1.45838 1.52331 1.63490 2.10902 2.19708 2.50287 2.86102 2.91420 3.03239 3.14734 3.28298 3.45483 3.66558 3.74212 3.88122 4.12078 4.17683 4.18882 4.31269 4.39151 4.49446 4.50146 4.56174 4.71499 4.82873 4.95766 5.10042 5.21184 5.28186 5.34383 5.77522 6.21551 6.34071 6.87120 7.07669 7.80440 7.99823 9.19166 Molecular weight = 314.10amu Principal moments of inertia in cm(-1) A = 0.028442 B = 0.002895 C = 0.002694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.223220 B = 9669.385845 C =10389.816625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.984 5.984 2 C -0.063 4.063 3 Si 0.958 3.042 4 H -0.274 1.274 5 H -0.303 1.303 6 H -0.245 1.245 7 C -0.238 4.238 8 H 0.055 0.945 9 N -0.737 5.737 10 C 0.166 3.834 11 H 0.065 0.935 12 C -0.131 4.131 13 C 0.079 3.921 14 N -0.601 5.601 15 C 0.569 3.431 16 O -0.573 6.573 17 C -0.079 4.079 18 C -0.119 4.119 19 C 0.101 3.899 20 F -0.113 7.113 21 C 0.051 3.949 22 F -0.120 7.120 23 C 0.092 3.908 24 F -0.120 7.120 25 C -0.074 4.074 26 C 0.091 3.909 27 H 0.258 0.742 28 H 0.372 0.628 29 H 0.089 0.911 30 H 0.113 0.887 31 H 0.115 0.885 32 H 0.112 0.888 33 H 0.214 0.786 34 H 0.165 0.835 35 H 0.046 0.954 36 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.366 -11.897 -0.536 27.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.634 5.634 2 C -0.255 4.255 3 Si 0.785 3.215 4 H -0.199 1.199 5 H -0.230 1.230 6 H -0.169 1.169 7 C -0.369 4.369 8 H 0.073 0.927 9 N -0.379 5.379 10 C 0.056 3.944 11 H 0.083 0.917 12 C -0.169 4.169 13 C -0.042 4.042 14 N -0.333 5.333 15 C 0.358 3.642 16 O -0.453 6.453 17 C -0.083 4.083 18 C -0.137 4.137 19 C 0.081 3.919 20 F -0.091 7.091 21 C 0.030 3.970 22 F -0.098 7.098 23 C 0.072 3.928 24 F -0.098 7.098 25 C -0.094 4.094 26 C -0.034 4.034 27 H 0.067 0.933 28 H 0.206 0.794 29 H 0.107 0.893 30 H 0.131 0.869 31 H 0.133 0.867 32 H 0.129 0.871 33 H 0.230 0.770 34 H 0.183 0.817 35 H 0.064 0.936 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 23.882 -12.182 -0.029 26.809 hybrid contribution -0.050 0.512 0.375 0.636 sum 23.832 -11.670 0.346 26.538 Atomic orbital electron populations 1.69901 1.07446 1.26832 1.59197 1.25579 0.96084 1.01609 1.02209 0.85375 0.78745 0.79115 0.78289 1.19944 1.22978 1.16928 1.19005 0.82626 0.93397 1.41855 0.92698 1.42556 1.02382 1.03551 1.89423 1.21525 0.92964 0.87853 0.92107 0.91655 1.23029 0.92361 0.98825 1.02732 1.22962 0.95332 0.98501 0.87369 1.48368 1.24332 1.31361 1.29232 1.17889 0.84493 0.79867 0.81931 1.90819 1.53037 1.71805 1.29676 1.19290 0.95683 0.95873 0.97441 1.22970 0.90754 1.02170 0.97791 1.17086 0.91165 0.94230 0.89454 1.91610 1.67281 1.92026 1.58167 1.17998 0.87637 0.92539 0.98833 1.91568 1.51981 1.72676 1.93573 1.17038 0.96037 0.87047 0.92723 1.91583 1.94533 1.49543 1.74190 1.21222 0.95726 0.92425 0.99988 1.23043 0.86236 0.92855 1.01295 0.93324 0.79361 0.89275 0.86873 0.86705 0.87059 0.76974 0.81733 0.93569 0.92098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -61.60 13.97 21.65 0.30 -61.30 16 2 C -0.06 -3.56 5.50 84.86 0.47 -3.10 16 3 Si 0.96 42.61 27.73 68.60 1.90 44.52 16 4 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 5 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 6 H -0.25 -9.49 6.52 99.48 0.65 -8.84 16 7 C -0.24 -12.74 10.47 84.03 0.88 -11.86 16 8 H 0.05 3.29 8.06 -2.91 -0.02 3.26 16 9 N -0.74 -30.25 5.08 -315.95 -1.61 -31.85 16 10 C 0.17 5.16 3.68 46.47 0.17 5.34 16 11 H 0.07 2.17 8.13 -2.39 -0.02 2.15 16 12 C -0.13 -2.39 6.60 31.87 0.21 -2.18 16 13 C 0.08 1.09 4.87 86.73 0.42 1.51 16 14 N -0.60 -14.33 3.33 -828.12 -2.75 -17.08 16 15 C 0.57 14.68 7.80 86.75 0.68 15.36 16 16 O -0.57 -19.97 16.67 -3.92 -0.07 -20.03 16 17 C -0.08 -1.43 5.87 -20.10 -0.12 -1.55 16 18 C -0.12 -1.47 8.56 22.57 0.19 -1.28 16 19 C 0.10 1.41 7.29 22.36 0.16 1.57 16 20 F -0.11 -1.61 17.17 44.97 0.77 -0.83 16 21 C 0.05 0.86 7.32 22.53 0.16 1.02 16 22 F -0.12 -2.25 17.08 44.97 0.77 -1.49 16 23 C 0.09 1.58 7.29 22.36 0.16 1.75 16 24 F -0.12 -2.28 17.17 44.97 0.77 -1.51 16 25 C -0.07 -1.31 9.56 22.57 0.22 -1.10 16 26 C 0.09 2.94 6.59 86.86 0.57 3.51 16 27 H 0.26 15.41 8.31 -92.70 -0.77 14.64 16 28 H 0.37 14.23 5.58 -92.71 -0.52 13.71 16 29 H 0.09 1.52 8.00 -2.39 -0.02 1.51 16 30 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.12 0.86 6.81 -2.39 -0.02 0.85 16 32 H 0.11 0.94 6.64 -2.39 -0.02 0.92 16 33 H 0.21 1.59 2.76 -7.83 -0.02 1.56 16 34 H 0.17 3.02 7.67 -2.91 -0.02 3.00 16 35 H 0.05 1.77 8.09 -2.39 -0.02 1.75 16 36 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 Total: -1.00 -71.64 316.69 4.85 -66.79 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: 0.58 Total: 13.80 kcal Atomic # 6 Polarization: 4.81 SS G_CDS: 4.18 Total: 8.99 kcal Atomic # 7 Polarization: -106.18 SS G_CDS: -4.06 Total: -110.23 kcal Atomic # 8 Polarization: -19.97 SS G_CDS: -0.07 Total: -20.03 kcal Atomic # 9 Polarization: -6.15 SS G_CDS: 2.31 Total: -3.83 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 1.90 Total: 44.52 kcal Total: -71.64 4.85 -66.79 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019418561.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.313 kcal (2) G-P(sol) polarization free energy of solvation -71.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds