Wall clock time and date at job start Tue Mar 31 2020 10:55:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86798 * 119.99799 * 2 1 4 4 H 1.48503 * 109.46855 * 239.99803 * 3 2 1 5 5 H 1.48498 * 109.47092 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47314 * 120.00048 * 3 2 1 7 7 C 1.38807 * 119.99963 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00049 * 179.97438 * 7 2 1 9 9 N 1.36941 * 120.00172 * 0.02562 * 7 2 1 10 10 C 1.46497 * 119.99976 * 179.97438 * 9 7 2 11 11 H 1.09006 * 112.85147 * 315.02831 * 10 9 7 12 12 C 1.53780 * 113.61821 * 86.22679 * 10 9 7 13 13 C 1.53783 * 87.08191 * 89.11439 * 12 10 9 14 14 H 1.09003 * 113.61260 * 140.06955 * 13 12 10 15 15 N 1.46500 * 113.61279 * 270.88660 * 13 12 10 16 16 C 1.34780 * 119.99800 * 201.63899 * 15 13 12 17 17 O 1.21586 * 120.00150 * 0.02562 * 16 15 13 18 18 C 1.47571 * 119.99901 * 180.02562 * 16 15 13 19 19 C 1.39758 * 120.13275 * 359.72495 * 18 16 15 20 20 C 1.37922 * 119.87560 * 179.69721 * 19 18 16 21 21 F 1.35104 * 119.92666 * 180.29693 * 20 19 18 22 22 C 1.38937 * 120.14295 * 0.57579 * 20 19 18 23 23 F 1.35103 * 119.86410 * 179.69617 * 22 20 19 24 24 C 1.38451 * 120.27273 * 359.72526 * 22 20 19 25 25 C 1.38215 * 120.11816 * 359.96813 * 24 22 20 26 26 F 1.35092 * 120.07333 * 180.02562 * 25 24 22 27 27 C 1.53777 * 87.07777 * 25.43571 * 13 12 10 28 28 H 0.96995 * 120.00161 * 0.02562 * 1 2 3 29 29 H 0.97005 * 119.99936 * 0.02562 * 9 7 2 30 30 H 1.09003 * 113.61195 * 334.56635 * 12 10 9 31 31 H 1.08993 * 113.69302 * 203.67760 * 12 10 9 32 32 H 0.97001 * 120.00378 * 21.64476 * 15 13 12 33 33 H 1.08000 * 120.06175 * 359.97390 * 19 18 16 34 34 H 1.08002 * 119.94257 * 180.02562 * 24 22 20 35 35 H 1.09000 * 113.61454 * 89.11741 * 27 13 12 36 36 H 1.09004 * 113.61591 * 220.01744 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7464 -0.0006 6 1 3.1039 1.6965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6567 0.0005 11 1 2.8852 -3.6680 -0.7094 12 6 2.4465 -4.1439 1.4065 13 6 1.0893 -4.8662 1.4454 14 1 1.1337 -5.8545 1.9030 15 7 0.0009 -4.0418 1.9764 16 6 -1.1057 -4.6270 2.4759 17 8 -1.2004 -5.8392 2.4863 18 6 -2.2023 -3.7966 3.0103 19 6 -2.0939 -2.4033 3.0050 20 6 -3.1247 -1.6321 3.4999 21 9 -3.0236 -0.2849 3.4898 22 6 -4.2644 -2.2378 4.0143 23 9 -5.2682 -1.4771 4.5033 24 6 -4.3756 -3.6178 4.0283 25 6 -3.3520 -4.4011 3.5292 26 9 -3.4615 -5.7475 3.5429 27 6 1.1485 -4.8933 -0.0910 28 1 -0.4850 0.8400 -0.0004 29 1 0.3555 -2.3881 -0.0002 30 1 2.5347 -3.3407 2.1380 31 1 3.3013 -4.8200 1.4151 32 1 0.0765 -3.0748 1.9684 33 1 -1.2066 -1.9312 2.6099 34 1 -5.2641 -4.0831 4.4289 35 1 1.6485 -5.7744 -0.4932 36 1 0.1889 -4.6950 -0.5685 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001022623491.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:55:48 Heat of formation + Delta-G solvation = -102.044917 kcal Electronic energy + Delta-G solvation = -26207.328767 eV Core-core repulsion = 21857.491258 eV Total energy + Delta-G solvation = -4349.837509 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 314.098 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.66575 -49.07218 -48.67106 -40.22697 -38.73589 -37.56479 -33.78779 -32.95806 -31.20652 -30.27403 -29.84319 -25.34453 -24.96074 -24.26245 -23.46461 -22.34997 -20.60138 -19.12112 -18.49902 -18.14985 -17.66732 -17.27371 -16.64574 -16.64165 -15.88594 -15.63816 -15.31894 -15.09372 -14.86716 -14.81733 -14.66777 -14.57257 -14.21222 -14.04097 -13.55489 -13.22593 -13.09184 -12.49127 -12.15094 -11.92460 -11.84788 -11.74516 -11.48142 -10.97131 -10.88780 -10.43226 -10.30694 -9.94295 -9.77320 -9.63927 -9.47910 -9.02850 -8.86045 -8.64642 -7.14779 -5.94051 -3.24185 0.19549 0.60849 2.48165 3.17398 3.35332 3.37589 3.40320 3.41399 3.42066 3.74484 4.11857 4.20688 4.43990 4.50034 4.77660 5.03081 5.12686 5.20735 5.32175 5.36344 5.41323 5.46450 5.61817 5.67730 5.72821 5.85678 6.07316 6.19900 6.30089 6.37690 6.50846 6.58570 6.74962 6.96936 7.59711 7.74964 8.25204 8.33947 9.36381 9.89801 10.25068 11.27889 Molecular weight = 314.10amu Principal moments of inertia in cm(-1) A = 0.011222 B = 0.005460 C = 0.003795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2494.548483 B = 5126.932070 C = 7377.243434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.008 4.008 3 Si 0.908 3.092 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.245 4.245 8 H 0.073 0.927 9 N -0.710 5.710 10 C 0.161 3.839 11 H 0.054 0.946 12 C -0.178 4.178 13 C 0.126 3.874 14 H 0.092 0.908 15 N -0.691 5.691 16 C 0.560 3.440 17 O -0.532 6.532 18 C -0.152 4.152 19 C -0.053 4.053 20 C 0.061 3.939 21 F -0.114 7.114 22 C 0.120 3.880 23 F -0.117 7.117 24 C -0.179 4.179 25 C 0.178 3.822 26 F -0.103 7.103 27 C -0.163 4.163 28 H 0.259 0.741 29 H 0.383 0.617 30 H 0.075 0.925 31 H 0.083 0.917 32 H 0.414 0.586 33 H 0.172 0.828 34 H 0.164 0.836 35 H 0.089 0.911 36 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.800 -7.390 7.758 12.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.205 4.205 3 Si 0.739 3.261 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.376 4.376 8 H 0.091 0.909 9 N -0.352 5.352 10 C 0.050 3.950 11 H 0.072 0.928 12 C -0.220 4.220 13 C 0.021 3.979 14 H 0.110 0.890 15 N -0.344 5.344 16 C 0.345 3.655 17 O -0.410 6.410 18 C -0.157 4.157 19 C -0.073 4.073 20 C 0.040 3.960 21 F -0.093 7.093 22 C 0.099 3.901 23 F -0.095 7.095 24 C -0.199 4.199 25 C 0.157 3.843 26 F -0.081 7.081 27 C -0.203 4.203 28 H 0.068 0.932 29 H 0.218 0.782 30 H 0.094 0.906 31 H 0.101 0.899 32 H 0.255 0.745 33 H 0.190 0.810 34 H 0.181 0.819 35 H 0.107 0.893 36 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -5.774 -8.039 7.755 12.573 hybrid contribution -0.069 1.700 0.034 1.702 sum -5.843 -6.338 7.789 11.618 Atomic orbital electron populations 1.69601 1.05006 1.26237 1.57145 1.24731 0.95568 0.97704 1.02468 0.86260 0.78573 0.83373 0.77911 1.21237 1.21639 1.21200 1.19187 0.91232 0.83692 1.43467 0.90933 1.42258 1.05499 0.99541 1.87918 1.21229 0.94129 0.85943 0.93721 0.92776 1.24074 0.94756 1.00280 1.02841 1.21779 0.86972 0.94650 0.94519 0.88963 1.45837 1.16631 1.11648 1.60296 1.17714 0.82068 0.87298 0.78385 1.90818 1.79937 1.13244 1.57013 1.20024 0.96315 0.93465 1.05854 1.21432 0.99098 0.91766 0.94979 1.17422 0.94968 0.78736 1.04847 1.91618 1.96093 1.27159 1.94391 1.17453 0.85432 0.88631 0.98613 1.91574 1.57966 1.75113 1.84895 1.20841 1.01522 0.91218 1.06320 1.17180 0.92726 0.78048 0.96350 1.91632 1.95754 1.27374 1.93314 1.23727 1.01261 0.99418 0.95851 0.93150 0.78208 0.90588 0.89862 0.74539 0.81041 0.81856 0.89266 0.91208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -25.21 13.06 55.49 0.72 -24.49 16 2 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 3 Si 0.91 20.97 29.55 -169.99 -5.02 15.95 16 4 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.24 -6.13 9.99 -15.06 -0.15 -6.28 16 8 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 9 N -0.71 -15.77 4.41 -52.64 -0.23 -16.00 16 10 C 0.16 2.91 4.53 -67.12 -0.30 2.60 16 11 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 12 C -0.18 -2.79 7.61 -25.92 -0.20 -2.99 16 13 C 0.13 1.98 4.28 -67.12 -0.29 1.70 16 14 H 0.09 1.43 7.55 -51.93 -0.39 1.04 16 15 N -0.69 -11.35 4.90 -54.04 -0.26 -11.61 16 16 C 0.56 9.36 7.76 -12.45 -0.10 9.26 16 17 O -0.53 -10.12 14.98 5.29 0.08 -10.04 16 18 C -0.15 -2.22 5.88 -104.91 -0.62 -2.84 16 19 C -0.05 -0.76 9.51 -39.13 -0.37 -1.13 16 20 C 0.06 0.85 7.29 -39.44 -0.29 0.56 16 21 F -0.11 -1.80 17.17 2.25 0.04 -1.76 16 22 C 0.12 1.45 7.31 -39.24 -0.29 1.17 16 23 F -0.12 -1.43 17.17 2.25 0.04 -1.39 16 24 C -0.18 -1.94 9.99 -39.51 -0.39 -2.34 16 25 C 0.18 2.36 7.28 -38.98 -0.28 2.07 16 26 F -0.10 -1.50 15.54 2.25 0.03 -1.46 16 27 C -0.16 -2.58 7.57 -25.92 -0.20 -2.77 16 28 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 29 H 0.38 8.95 6.97 -40.82 -0.28 8.66 16 30 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 31 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.41 7.14 5.20 -40.82 -0.21 6.93 16 33 H 0.17 2.64 6.40 -52.49 -0.34 2.30 16 34 H 0.16 1.29 8.06 -52.49 -0.42 0.87 16 35 H 0.09 1.19 8.14 -51.93 -0.42 0.76 16 36 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 323.63 15.07 4.88 4.88 Total: -1.00 -27.95 323.63 -6.60 -34.56 By element: Atomic # 1 Polarization: 15.99 SS G_CDS: -3.31 Total: 12.68 kcal Atomic # 6 Polarization: 2.27 SS G_CDS: -3.57 Total: -1.30 kcal Atomic # 7 Polarization: -52.33 SS G_CDS: 0.23 Total: -52.10 kcal Atomic # 8 Polarization: -10.12 SS G_CDS: 0.08 Total: -10.04 kcal Atomic # 9 Polarization: -4.73 SS G_CDS: 0.11 Total: -4.62 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -27.95 -6.60 -34.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022623491.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.488 kcal (2) G-P(sol) polarization free energy of solvation -27.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds