Wall clock time and date at job start Tue Mar 31 2020 10:55:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86798 * 119.99799 * 2 1 4 4 H 1.48503 * 109.46855 * 239.99803 * 3 2 1 5 5 H 1.48498 * 109.47092 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47314 * 120.00048 * 3 2 1 7 7 C 1.38807 * 119.99963 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00049 * 179.97438 * 7 2 1 9 9 N 1.36941 * 120.00172 * 0.02562 * 7 2 1 10 10 C 1.46497 * 119.99976 * 179.97438 * 9 7 2 11 11 H 1.09006 * 112.85147 * 315.02831 * 10 9 7 12 12 C 1.53780 * 113.61821 * 86.22679 * 10 9 7 13 13 C 1.53783 * 87.08191 * 89.11439 * 12 10 9 14 14 H 1.09003 * 113.61260 * 140.06955 * 13 12 10 15 15 N 1.46500 * 113.61279 * 270.88660 * 13 12 10 16 16 C 1.34780 * 119.99800 * 201.63899 * 15 13 12 17 17 O 1.21586 * 120.00150 * 0.02562 * 16 15 13 18 18 C 1.47571 * 119.99901 * 180.02562 * 16 15 13 19 19 C 1.39758 * 120.13275 * 359.72495 * 18 16 15 20 20 C 1.37922 * 119.87560 * 179.69721 * 19 18 16 21 21 F 1.35104 * 119.92666 * 180.29693 * 20 19 18 22 22 C 1.38937 * 120.14295 * 0.57579 * 20 19 18 23 23 F 1.35103 * 119.86410 * 179.69617 * 22 20 19 24 24 C 1.38451 * 120.27273 * 359.72526 * 22 20 19 25 25 C 1.38215 * 120.11816 * 359.96813 * 24 22 20 26 26 F 1.35092 * 120.07333 * 180.02562 * 25 24 22 27 27 C 1.53777 * 87.07777 * 25.43571 * 13 12 10 28 28 H 0.96995 * 120.00161 * 0.02562 * 1 2 3 29 29 H 0.97005 * 119.99936 * 0.02562 * 9 7 2 30 30 H 1.09003 * 113.61195 * 334.56635 * 12 10 9 31 31 H 1.08993 * 113.69302 * 203.67760 * 12 10 9 32 32 H 0.97001 * 120.00378 * 21.64476 * 15 13 12 33 33 H 1.08000 * 120.06175 * 359.97390 * 19 18 16 34 34 H 1.08002 * 119.94257 * 180.02562 * 24 22 20 35 35 H 1.09000 * 113.61454 * 89.11741 * 27 13 12 36 36 H 1.09004 * 113.61591 * 220.01744 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7464 -0.0006 6 1 3.1039 1.6965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6567 0.0005 11 1 2.8852 -3.6680 -0.7094 12 6 2.4465 -4.1439 1.4065 13 6 1.0893 -4.8662 1.4454 14 1 1.1337 -5.8545 1.9030 15 7 0.0009 -4.0418 1.9764 16 6 -1.1057 -4.6270 2.4759 17 8 -1.2004 -5.8392 2.4863 18 6 -2.2023 -3.7966 3.0103 19 6 -2.0939 -2.4033 3.0050 20 6 -3.1247 -1.6321 3.4999 21 9 -3.0236 -0.2849 3.4898 22 6 -4.2644 -2.2378 4.0143 23 9 -5.2682 -1.4771 4.5033 24 6 -4.3756 -3.6178 4.0283 25 6 -3.3520 -4.4011 3.5292 26 9 -3.4615 -5.7475 3.5429 27 6 1.1485 -4.8933 -0.0910 28 1 -0.4850 0.8400 -0.0004 29 1 0.3555 -2.3881 -0.0002 30 1 2.5347 -3.3407 2.1380 31 1 3.3013 -4.8200 1.4151 32 1 0.0765 -3.0748 1.9684 33 1 -1.2066 -1.9312 2.6099 34 1 -5.2641 -4.0831 4.4289 35 1 1.6485 -5.7744 -0.4932 36 1 0.1889 -4.6950 -0.5685 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001022623491.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:55:47 Heat of formation + Delta-G solvation = -117.808299 kcal Electronic energy + Delta-G solvation = -26208.012319 eV Core-core repulsion = 21857.491258 eV Total energy + Delta-G solvation = -4350.521060 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 314.098 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -50.73597 -50.17636 -49.79052 -41.51773 -39.96416 -38.85707 -35.48677 -34.40156 -32.43513 -31.63685 -31.28643 -26.75497 -26.31249 -25.71043 -24.69423 -23.68629 -21.89297 -20.46644 -19.66196 -19.35322 -19.02635 -18.79223 -17.85449 -17.72274 -17.15119 -16.76386 -16.68362 -16.38738 -16.23032 -16.12636 -15.79110 -15.73965 -15.56525 -15.42571 -15.00825 -14.89172 -14.38645 -13.59100 -13.40911 -13.33906 -13.12811 -12.94167 -12.89836 -12.74314 -12.54100 -12.17833 -11.90224 -11.71104 -11.19468 -11.05872 -10.80817 -10.52184 -10.09513 -9.86177 -8.97423 -7.91803 -5.19967 -0.90128 -0.44185 1.32657 1.51598 1.52514 1.58106 1.95644 2.19501 2.30958 2.58162 2.67717 3.06321 3.12482 3.32059 3.41044 3.68889 3.72872 3.85280 3.98365 4.13457 4.22633 4.26805 4.39546 4.43734 4.57253 4.62736 4.84819 4.91303 4.99725 5.07782 5.25777 5.32222 5.37498 5.54453 5.68578 6.30601 6.41170 7.01100 7.37739 8.09814 8.34539 9.29612 Molecular weight = 314.10amu Principal moments of inertia in cm(-1) A = 0.011222 B = 0.005460 C = 0.003795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2494.548483 B = 5126.932070 C = 7377.243434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.958 5.958 2 C -0.062 4.062 3 Si 0.962 3.038 4 H -0.284 1.284 5 H -0.301 1.301 6 H -0.280 1.280 7 C -0.239 4.239 8 H 0.075 0.925 9 N -0.719 5.719 10 C 0.143 3.857 11 H 0.057 0.943 12 C -0.160 4.160 13 C 0.122 3.878 14 H 0.101 0.899 15 N -0.692 5.692 16 C 0.559 3.441 17 O -0.558 6.558 18 C -0.162 4.162 19 C -0.053 4.053 20 C 0.048 3.952 21 F -0.128 7.128 22 C 0.132 3.868 23 F -0.113 7.113 24 C -0.150 4.150 25 C 0.177 3.823 26 F -0.109 7.109 27 C -0.150 4.150 28 H 0.250 0.750 29 H 0.375 0.625 30 H 0.058 0.942 31 H 0.117 0.883 32 H 0.410 0.590 33 H 0.155 0.845 34 H 0.203 0.797 35 H 0.121 0.879 36 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.854 -8.461 8.427 13.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.608 5.608 2 C -0.255 4.255 3 Si 0.792 3.208 4 H -0.211 1.211 5 H -0.227 1.227 6 H -0.206 1.206 7 C -0.371 4.371 8 H 0.093 0.907 9 N -0.360 5.360 10 C 0.034 3.966 11 H 0.075 0.925 12 C -0.201 4.201 13 C 0.018 3.982 14 H 0.119 0.881 15 N -0.344 5.344 16 C 0.346 3.654 17 O -0.438 6.438 18 C -0.167 4.167 19 C -0.073 4.073 20 C 0.028 3.972 21 F -0.107 7.107 22 C 0.112 3.888 23 F -0.091 7.091 24 C -0.169 4.169 25 C 0.156 3.844 26 F -0.087 7.087 27 C -0.189 4.189 28 H 0.059 0.941 29 H 0.208 0.792 30 H 0.077 0.923 31 H 0.135 0.865 32 H 0.249 0.751 33 H 0.173 0.827 34 H 0.220 0.780 35 H 0.140 0.860 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -5.785 -9.138 8.425 13.709 hybrid contribution -0.034 1.968 -0.180 1.976 sum -5.819 -7.170 8.244 12.379 Atomic orbital electron populations 1.69732 1.05994 1.25995 1.59045 1.25336 0.96243 1.00219 1.03688 0.85396 0.77292 0.80198 0.77907 1.21068 1.22712 1.20610 1.19470 0.91485 0.84756 1.41343 0.90664 1.42350 1.05217 1.00390 1.88085 1.21495 0.94598 0.85177 0.95372 0.92546 1.23958 0.95906 1.00117 1.00104 1.21894 0.86841 0.94907 0.94597 0.88095 1.45909 1.16959 1.11449 1.60099 1.17975 0.82366 0.87167 0.77917 1.90793 1.80509 1.14192 1.58301 1.19877 0.96555 0.93204 1.07024 1.21154 0.98872 0.91710 0.95549 1.17557 0.95778 0.78125 1.05733 1.91580 1.96252 1.28244 1.94616 1.17384 0.84663 0.89016 0.97777 1.91593 1.57615 1.75176 1.84705 1.21066 1.01658 0.90127 1.04038 1.17266 0.92798 0.77903 0.96427 1.91621 1.95762 1.27923 1.93383 1.23717 1.00098 0.99333 0.95783 0.94058 0.79219 0.92282 0.86497 0.75078 0.82739 0.77998 0.86042 0.92991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -52.99 13.06 21.65 0.28 -52.71 16 2 C -0.06 -3.23 5.50 84.86 0.47 -2.76 16 3 Si 0.96 43.47 29.55 68.60 2.03 45.50 16 4 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 5 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 6 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 7 C -0.24 -11.97 9.99 84.03 0.84 -11.13 16 8 H 0.08 3.67 7.83 -2.91 -0.02 3.64 16 9 N -0.72 -32.08 4.41 -320.45 -1.41 -33.49 16 10 C 0.14 5.00 4.53 45.52 0.21 5.21 16 11 H 0.06 1.96 8.14 -2.38 -0.02 1.94 16 12 C -0.16 -4.73 7.61 31.12 0.24 -4.49 16 13 C 0.12 3.71 4.28 45.52 0.19 3.90 16 14 H 0.10 2.93 7.55 -2.39 -0.02 2.91 16 15 N -0.69 -22.87 4.90 -443.16 -2.17 -25.04 16 16 C 0.56 18.71 7.76 86.71 0.67 19.39 16 17 O -0.56 -21.01 14.98 -3.99 -0.06 -21.07 16 18 C -0.16 -4.71 5.88 -20.05 -0.12 -4.83 16 19 C -0.05 -1.55 9.51 22.56 0.21 -1.34 16 20 C 0.05 1.34 7.29 22.36 0.16 1.51 16 21 F -0.13 -4.10 17.17 44.97 0.77 -3.33 16 22 C 0.13 2.98 7.31 22.49 0.16 3.14 16 23 F -0.11 -2.50 17.17 44.97 0.77 -1.73 16 24 C -0.15 -2.83 9.99 22.31 0.22 -2.60 16 25 C 0.18 4.42 7.28 22.66 0.16 4.59 16 26 F -0.11 -3.01 15.54 44.97 0.70 -2.31 16 27 C -0.15 -4.51 7.57 31.12 0.24 -4.28 16 28 H 0.25 13.82 8.31 -92.71 -0.77 13.05 16 29 H 0.37 17.88 6.97 -92.70 -0.65 17.23 16 30 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.12 2.69 8.14 -2.39 -0.02 2.67 16 32 H 0.41 14.55 5.20 -92.71 -0.48 14.06 16 33 H 0.16 5.06 6.40 -2.91 -0.02 5.04 16 34 H 0.20 2.28 8.06 -2.91 -0.02 2.25 16 35 H 0.12 2.86 8.14 -2.39 -0.02 2.84 16 36 H 0.05 1.76 8.14 -2.38 -0.02 1.74 16 Total: -1.00 -59.89 323.63 4.62 -55.27 By element: Atomic # 1 Polarization: 32.57 SS G_CDS: 0.04 Total: 32.61 kcal Atomic # 6 Polarization: 2.63 SS G_CDS: 3.67 Total: 6.29 kcal Atomic # 7 Polarization: -107.94 SS G_CDS: -3.30 Total: -111.24 kcal Atomic # 8 Polarization: -21.01 SS G_CDS: -0.06 Total: -21.07 kcal Atomic # 9 Polarization: -9.61 SS G_CDS: 2.24 Total: -7.37 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal Total: -59.89 4.62 -55.27 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022623491.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.534 kcal (2) G-P(sol) polarization free energy of solvation -59.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds