Wall clock time and date at job start Tue Mar 31 2020 10:58:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 119.99776 * 2 1 4 4 H 1.48497 * 109.47050 * 240.00017 * 3 2 1 5 5 H 1.48496 * 109.47289 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.46855 * 119.99997 * 3 2 1 7 7 C 1.38811 * 119.99773 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99701 * 179.73016 * 7 2 1 9 9 N 1.36935 * 120.00369 * 359.97438 * 7 2 1 10 10 C 1.46499 * 119.99926 * 179.73019 * 9 7 2 11 11 H 1.08994 * 112.84864 * 334.66357 * 10 9 7 12 12 C 1.53777 * 113.61575 * 105.86433 * 10 9 7 13 13 C 1.54054 * 86.98585 * 89.15829 * 12 10 9 14 14 H 1.09000 * 113.62033 * 139.97694 * 13 12 10 15 15 N 1.46500 * 113.69021 * 270.87336 * 13 12 10 16 16 C 1.34777 * 120.00176 * 252.52626 * 15 13 12 17 17 O 1.21589 * 119.99649 * 0.02562 * 16 15 13 18 18 C 1.47580 * 120.00118 * 179.97438 * 16 15 13 19 19 C 1.39738 * 120.13024 * 359.73411 * 18 16 15 20 20 C 1.37749 * 119.94143 * 179.73786 * 19 18 16 21 21 C 1.38716 * 120.21474 * 0.50881 * 20 19 18 22 22 F 1.35102 * 119.86814 * 179.74141 * 21 20 19 23 23 C 1.38669 * 120.26406 * 359.76511 * 21 20 19 24 24 F 1.35097 * 119.96933 * 179.97438 * 23 21 20 25 25 C 1.38381 * 120.05221 * 359.97438 * 23 21 20 26 26 F 1.35105 * 120.10274 * 180.02562 * 25 23 21 27 27 C 1.53784 * 87.07794 * 25.43063 * 13 12 10 28 28 H 0.97004 * 120.00382 * 359.97438 * 1 2 3 29 29 H 0.97005 * 119.99813 * 359.72895 * 9 7 2 30 30 H 1.09001 * 113.61299 * 203.66029 * 12 10 9 31 31 H 1.09002 * 113.61342 * 334.56821 * 12 10 9 32 32 H 0.97001 * 120.00178 * 72.52957 * 15 13 12 33 33 H 1.08001 * 120.02904 * 359.97438 * 19 18 16 34 34 H 1.08001 * 119.89186 * 180.27392 * 20 19 18 35 35 H 1.08996 * 113.61919 * 220.02286 * 27 13 12 36 36 H 1.08997 * 113.60971 * 89.11854 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2851 2.7464 0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0049 9 7 1.3255 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0071 11 1 3.0539 -3.5682 -0.4411 12 6 2.0386 -4.3863 1.3465 13 6 0.7439 -5.0700 0.8673 14 1 0.6795 -6.1233 1.1402 15 7 -0.4726 -4.3221 1.1946 16 6 -1.2986 -4.7687 2.1613 17 8 -1.0340 -5.7920 2.7622 18 6 -2.5238 -4.0150 2.4914 19 6 -2.8271 -2.8350 1.8071 20 6 -3.9745 -2.1374 2.1146 21 6 -4.8253 -2.5968 3.1092 22 9 -5.9460 -1.9043 3.4087 23 6 -4.5298 -3.7636 3.7978 24 9 -5.3624 -4.2053 4.7657 25 6 -3.3829 -4.4759 3.4941 26 9 -3.0943 -5.6132 4.1640 27 6 1.2442 -4.8350 -0.5678 28 1 -0.4851 0.8400 0.0004 29 1 0.3555 -2.3881 0.0038 30 1 2.8717 -5.0758 1.4828 31 1 1.8937 -3.7221 2.1985 32 1 -0.6835 -3.5055 0.7154 33 1 -2.1646 -2.4723 1.0351 34 1 -4.2104 -1.2279 1.5821 35 1 0.4585 -4.5327 -1.2601 36 1 1.8605 -5.6469 -0.9537 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001022624959.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:44 Heat of formation + Delta-G solvation = -98.799449 kcal Electronic energy + Delta-G solvation = -26041.332811 eV Core-core repulsion = 21691.636036 eV Total energy + Delta-G solvation = -4349.696774 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 314.098 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.88737 -49.27574 -48.53942 -40.29094 -38.79343 -37.60709 -33.81045 -32.95830 -30.88336 -30.73571 -29.89508 -25.22057 -25.10321 -24.22060 -23.37963 -22.56759 -20.66320 -19.34512 -18.51725 -18.18277 -17.83041 -17.35366 -16.92640 -16.50126 -16.03641 -15.63124 -15.57348 -15.07961 -14.94527 -14.72643 -14.62889 -14.49756 -14.32365 -14.10925 -13.48684 -13.21032 -13.05621 -12.29809 -12.25205 -12.12633 -12.00640 -11.88544 -11.56320 -10.96844 -10.91911 -10.34271 -10.27807 -10.03635 -9.80456 -9.70431 -9.18224 -9.13138 -9.03894 -8.69361 -7.19126 -5.99803 -3.27196 0.18299 0.56430 2.49188 2.96330 3.26763 3.33809 3.38799 3.39463 3.39888 3.94962 4.00995 4.25878 4.37663 4.44223 4.57053 4.95452 5.13891 5.16630 5.32524 5.36728 5.40775 5.58138 5.67390 5.74659 5.76433 5.83798 6.05075 6.12566 6.21808 6.34025 6.46649 6.61817 6.70633 6.97694 7.55564 7.65707 8.20359 8.29839 9.31643 9.84030 10.17852 11.23737 Molecular weight = 314.10amu Principal moments of inertia in cm(-1) A = 0.012574 B = 0.004592 C = 0.003529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2226.223207 B = 6096.086945 C = 7931.806569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.009 4.009 3 Si 0.911 3.089 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.286 1.286 7 C -0.242 4.242 8 H 0.074 0.926 9 N -0.704 5.704 10 C 0.163 3.837 11 H 0.067 0.933 12 C -0.186 4.186 13 C 0.122 3.878 14 H 0.095 0.905 15 N -0.690 5.690 16 C 0.562 3.438 17 O -0.530 6.530 18 C -0.155 4.155 19 C -0.024 4.024 20 C -0.136 4.136 21 C 0.121 3.879 22 F -0.117 7.117 23 C 0.015 3.985 24 F -0.117 7.117 25 C 0.155 3.845 26 F -0.096 7.096 27 C -0.166 4.166 28 H 0.258 0.742 29 H 0.376 0.624 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.407 0.593 33 H 0.167 0.833 34 H 0.164 0.836 35 H 0.072 0.928 36 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.325 -6.969 2.009 10.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.205 4.205 3 Si 0.742 3.258 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.373 4.373 8 H 0.092 0.908 9 N -0.345 5.345 10 C 0.051 3.949 11 H 0.086 0.914 12 C -0.228 4.228 13 C 0.017 3.983 14 H 0.113 0.887 15 N -0.344 5.344 16 C 0.347 3.653 17 O -0.408 6.408 18 C -0.159 4.159 19 C -0.043 4.043 20 C -0.155 4.155 21 C 0.100 3.900 22 F -0.095 7.095 23 C -0.006 4.006 24 F -0.096 7.096 25 C 0.133 3.867 26 F -0.074 7.074 27 C -0.206 4.206 28 H 0.067 0.933 29 H 0.211 0.789 30 H 0.098 0.902 31 H 0.091 0.909 32 H 0.247 0.753 33 H 0.184 0.816 34 H 0.182 0.818 35 H 0.090 0.910 36 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -7.075 -7.550 2.478 10.639 hybrid contribution -0.333 1.264 0.295 1.340 sum -7.408 -6.286 2.773 10.103 Atomic orbital electron populations 1.69557 1.05130 1.26177 1.57665 1.24695 0.95631 0.97753 1.02412 0.86211 0.78580 0.83114 0.77937 1.21176 1.21624 1.21222 1.19249 0.91273 0.83716 1.43078 0.90817 1.42179 1.05009 0.99766 1.87504 1.21238 0.95403 0.85481 0.92818 0.91445 1.24337 0.96114 1.00271 1.02096 1.21894 0.83898 0.95788 0.96701 0.88715 1.45740 1.22857 1.28371 1.37404 1.17673 0.82497 0.84567 0.80514 1.90825 1.74669 1.24285 1.51046 1.20101 0.97659 0.98767 0.99421 1.21453 0.95228 0.90553 0.97030 1.21177 0.94156 1.02623 0.97557 1.17619 0.85523 0.90061 0.96782 1.91574 1.48328 1.77483 1.92110 1.17364 0.92092 0.96632 0.94504 1.91559 1.69474 1.88839 1.59691 1.17269 0.92507 0.84321 0.92595 1.91645 1.92601 1.45642 1.77542 1.23854 1.00886 1.00527 0.95308 0.93250 0.78910 0.90204 0.90931 0.75278 0.81585 0.81820 0.90970 0.88872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -24.39 13.06 55.49 0.72 -23.66 16 2 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 3 Si 0.91 20.71 29.55 -169.99 -5.02 15.68 16 4 H -0.29 -6.45 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 6 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.24 -6.06 9.97 -15.06 -0.15 -6.21 16 8 H 0.07 1.82 7.83 -52.48 -0.41 1.40 16 9 N -0.70 -15.33 5.17 -52.64 -0.27 -15.60 16 10 C 0.16 2.88 4.55 -67.12 -0.31 2.57 16 11 H 0.07 1.19 8.11 -51.93 -0.42 0.77 16 12 C -0.19 -3.06 7.70 -25.78 -0.20 -3.26 16 13 C 0.12 1.89 4.33 -66.97 -0.29 1.60 16 14 H 0.09 1.46 7.46 -51.93 -0.39 1.07 16 15 N -0.69 -11.00 5.09 -53.90 -0.27 -11.27 16 16 C 0.56 9.41 7.76 -12.45 -0.10 9.32 16 17 O -0.53 -10.34 14.93 5.29 0.08 -10.26 16 18 C -0.16 -2.26 5.88 -104.92 -0.62 -2.87 16 19 C -0.02 -0.30 9.53 -39.20 -0.37 -0.67 16 20 C -0.14 -1.52 10.00 -39.58 -0.40 -1.91 16 21 C 0.12 1.46 7.31 -39.25 -0.29 1.17 16 22 F -0.12 -1.42 17.17 2.25 0.04 -1.38 16 23 C 0.02 0.21 7.30 -39.37 -0.29 -0.08 16 24 F -0.12 -1.63 17.09 2.25 0.04 -1.60 16 25 C 0.15 2.28 7.29 -38.92 -0.28 2.00 16 26 F -0.10 -1.60 15.46 2.25 0.03 -1.56 16 27 C -0.17 -2.39 7.58 -25.91 -0.20 -2.59 16 28 H 0.26 6.59 8.31 -40.82 -0.34 6.25 16 29 H 0.38 8.16 5.36 -40.82 -0.22 7.94 16 30 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 32 H 0.41 6.48 4.18 -40.82 -0.17 6.31 16 33 H 0.17 2.12 6.40 -52.49 -0.34 1.79 16 34 H 0.16 1.49 8.06 -52.49 -0.42 1.07 16 35 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 LS Contribution 321.82 15.07 4.85 4.85 Total: -1.00 -28.34 321.82 -6.58 -34.92 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: -3.19 Total: 11.15 kcal Atomic # 6 Polarization: 2.31 SS G_CDS: -3.58 Total: -1.27 kcal Atomic # 7 Polarization: -50.72 SS G_CDS: 0.18 Total: -50.54 kcal Atomic # 8 Polarization: -10.34 SS G_CDS: 0.08 Total: -10.26 kcal Atomic # 9 Polarization: -4.65 SS G_CDS: 0.11 Total: -4.54 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -28.34 -6.58 -34.92 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022624959.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.880 kcal (2) G-P(sol) polarization free energy of solvation -28.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds