Wall clock time and date at job start Tue Mar 31 2020 10:58:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 119.99776 * 2 1 4 4 H 1.48497 * 109.47050 * 240.00017 * 3 2 1 5 5 H 1.48496 * 109.47289 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.46855 * 119.99997 * 3 2 1 7 7 C 1.38811 * 119.99773 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99701 * 179.73016 * 7 2 1 9 9 N 1.36935 * 120.00369 * 359.97438 * 7 2 1 10 10 C 1.46499 * 119.99926 * 179.73019 * 9 7 2 11 11 H 1.08994 * 112.84864 * 334.66357 * 10 9 7 12 12 C 1.53777 * 113.61575 * 105.86433 * 10 9 7 13 13 C 1.54054 * 86.98585 * 89.15829 * 12 10 9 14 14 H 1.09000 * 113.62033 * 139.97694 * 13 12 10 15 15 N 1.46500 * 113.69021 * 270.87336 * 13 12 10 16 16 C 1.34777 * 120.00176 * 252.52626 * 15 13 12 17 17 O 1.21589 * 119.99649 * 0.02562 * 16 15 13 18 18 C 1.47580 * 120.00118 * 179.97438 * 16 15 13 19 19 C 1.39738 * 120.13024 * 359.73411 * 18 16 15 20 20 C 1.37749 * 119.94143 * 179.73786 * 19 18 16 21 21 C 1.38716 * 120.21474 * 0.50881 * 20 19 18 22 22 F 1.35102 * 119.86814 * 179.74141 * 21 20 19 23 23 C 1.38669 * 120.26406 * 359.76511 * 21 20 19 24 24 F 1.35097 * 119.96933 * 179.97438 * 23 21 20 25 25 C 1.38381 * 120.05221 * 359.97438 * 23 21 20 26 26 F 1.35105 * 120.10274 * 180.02562 * 25 23 21 27 27 C 1.53784 * 87.07794 * 25.43063 * 13 12 10 28 28 H 0.97004 * 120.00382 * 359.97438 * 1 2 3 29 29 H 0.97005 * 119.99813 * 359.72895 * 9 7 2 30 30 H 1.09001 * 113.61299 * 203.66029 * 12 10 9 31 31 H 1.09002 * 113.61342 * 334.56821 * 12 10 9 32 32 H 0.97001 * 120.00178 * 72.52957 * 15 13 12 33 33 H 1.08001 * 120.02904 * 359.97438 * 19 18 16 34 34 H 1.08001 * 119.89186 * 180.27392 * 20 19 18 35 35 H 1.08996 * 113.61919 * 220.02286 * 27 13 12 36 36 H 1.08997 * 113.60971 * 89.11854 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2851 2.7464 0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0049 9 7 1.3255 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0071 11 1 3.0539 -3.5682 -0.4411 12 6 2.0386 -4.3863 1.3465 13 6 0.7439 -5.0700 0.8673 14 1 0.6795 -6.1233 1.1402 15 7 -0.4726 -4.3221 1.1946 16 6 -1.2986 -4.7687 2.1613 17 8 -1.0340 -5.7920 2.7622 18 6 -2.5238 -4.0150 2.4914 19 6 -2.8271 -2.8350 1.8071 20 6 -3.9745 -2.1374 2.1146 21 6 -4.8253 -2.5968 3.1092 22 9 -5.9460 -1.9043 3.4087 23 6 -4.5298 -3.7636 3.7978 24 9 -5.3624 -4.2053 4.7657 25 6 -3.3829 -4.4759 3.4941 26 9 -3.0943 -5.6132 4.1640 27 6 1.2442 -4.8350 -0.5678 28 1 -0.4851 0.8400 0.0004 29 1 0.3555 -2.3881 0.0038 30 1 2.8717 -5.0758 1.4828 31 1 1.8937 -3.7221 2.1985 32 1 -0.6835 -3.5055 0.7154 33 1 -2.1646 -2.4723 1.0351 34 1 -4.2104 -1.2279 1.5821 35 1 0.4585 -4.5327 -1.2601 36 1 1.8605 -5.6469 -0.9537 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001022624959.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:43 Heat of formation + Delta-G solvation = -114.922901 kcal Electronic energy + Delta-G solvation = -26042.031976 eV Core-core repulsion = 21691.636036 eV Total energy + Delta-G solvation = -4350.395940 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 314.098 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -50.97183 -50.37720 -49.64985 -41.56430 -39.99457 -38.89715 -35.47755 -34.39048 -32.16733 -31.83237 -31.45091 -26.57505 -26.45479 -25.69650 -24.48645 -23.91184 -21.95605 -20.68682 -19.68115 -19.39106 -19.03016 -18.92147 -18.01856 -17.70202 -17.25304 -16.81993 -16.70912 -16.55265 -16.22163 -16.02921 -15.86987 -15.68476 -15.60975 -15.48870 -14.87355 -14.81671 -14.30681 -13.55508 -13.43674 -13.39675 -13.18659 -13.03915 -13.00619 -12.74364 -12.52383 -12.16110 -11.75616 -11.69239 -11.21522 -11.12253 -10.77490 -10.30391 -10.20010 -9.96361 -8.95705 -7.91517 -5.16790 -0.90159 -0.49221 1.34720 1.54080 1.55343 1.59793 1.80040 2.14275 2.20837 2.60269 2.88337 2.93338 3.17210 3.30282 3.42198 3.48013 3.68128 3.88095 4.00899 4.10983 4.27194 4.34607 4.43951 4.58464 4.64226 4.75786 4.83329 4.92681 4.99615 5.09890 5.26127 5.31163 5.36365 5.56733 5.69625 6.32601 6.37798 6.99326 7.40974 8.10850 8.35989 9.31382 Molecular weight = 314.10amu Principal moments of inertia in cm(-1) A = 0.012574 B = 0.004592 C = 0.003529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2226.223207 B = 6096.086945 C = 7931.806569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.058 4.058 3 Si 0.962 3.038 4 H -0.283 1.283 5 H -0.295 1.295 6 H -0.288 1.288 7 C -0.247 4.247 8 H 0.072 0.928 9 N -0.714 5.714 10 C 0.145 3.855 11 H 0.069 0.931 12 C -0.179 4.179 13 C 0.118 3.882 14 H 0.100 0.900 15 N -0.687 5.687 16 C 0.559 3.441 17 O -0.563 6.563 18 C -0.163 4.163 19 C -0.017 4.017 20 C -0.117 4.117 21 C 0.132 3.868 22 F -0.113 7.113 23 C 0.015 3.985 24 F -0.121 7.121 25 C 0.141 3.859 26 F -0.112 7.112 27 C -0.142 4.142 28 H 0.254 0.746 29 H 0.374 0.626 30 H 0.106 0.894 31 H 0.041 0.959 32 H 0.408 0.592 33 H 0.167 0.833 34 H 0.192 0.808 35 H 0.071 0.929 36 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.331 -6.745 1.180 10.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.252 4.252 3 Si 0.792 3.208 4 H -0.209 1.209 5 H -0.221 1.221 6 H -0.215 1.215 7 C -0.378 4.378 8 H 0.090 0.910 9 N -0.355 5.355 10 C 0.035 3.965 11 H 0.087 0.913 12 C -0.221 4.221 13 C 0.013 3.987 14 H 0.118 0.882 15 N -0.340 5.340 16 C 0.346 3.654 17 O -0.444 6.444 18 C -0.168 4.168 19 C -0.036 4.036 20 C -0.136 4.136 21 C 0.111 3.889 22 F -0.091 7.091 23 C -0.006 4.006 24 F -0.100 7.100 25 C 0.119 3.881 26 F -0.090 7.090 27 C -0.181 4.181 28 H 0.063 0.937 29 H 0.209 0.791 30 H 0.125 0.875 31 H 0.060 0.940 32 H 0.248 0.752 33 H 0.184 0.816 34 H 0.209 0.791 35 H 0.090 0.910 36 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -7.060 -7.345 1.636 10.319 hybrid contribution -0.306 1.183 0.556 1.342 sum -7.366 -6.162 2.192 9.851 Atomic orbital electron populations 1.69642 1.05689 1.26221 1.58806 1.25273 0.96472 0.99983 1.03449 0.85405 0.77422 0.80344 0.77623 1.20938 1.22105 1.21490 1.19516 0.91475 0.85065 1.41792 0.91034 1.42266 1.05097 1.00377 1.87718 1.21496 0.95795 0.85079 0.94110 0.91269 1.24278 0.97731 1.00094 0.99956 1.21999 0.83309 0.95817 0.97528 0.88245 1.45776 1.22884 1.28252 1.37040 1.17980 0.83030 0.84270 0.80088 1.90799 1.75609 1.25772 1.52201 1.19972 0.97106 0.99500 1.00196 1.21443 0.95673 0.89823 0.96635 1.21405 0.92785 1.02795 0.96579 1.17594 0.85514 0.89352 0.96396 1.91593 1.48176 1.77258 1.92057 1.17391 0.91681 0.96967 0.94591 1.91547 1.69499 1.88997 1.59943 1.17387 0.93286 0.84319 0.93086 1.91598 1.92848 1.46608 1.77986 1.23758 1.00363 0.99590 0.94424 0.93672 0.79142 0.87547 0.94008 0.75229 0.81572 0.79060 0.91029 0.85414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -49.10 13.06 21.65 0.28 -48.82 16 2 C -0.06 -2.94 5.50 84.86 0.47 -2.48 16 3 Si 0.96 42.18 29.55 68.60 2.03 44.21 16 4 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 5 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 6 H -0.29 -12.61 7.11 99.48 0.71 -11.91 16 7 C -0.25 -12.20 9.97 84.03 0.84 -11.36 16 8 H 0.07 3.48 7.83 -2.91 -0.02 3.46 16 9 N -0.71 -30.57 5.17 -320.45 -1.66 -32.23 16 10 C 0.15 4.93 4.55 45.52 0.21 5.13 16 11 H 0.07 2.31 8.11 -2.39 -0.02 2.29 16 12 C -0.18 -5.66 7.70 31.21 0.24 -5.42 16 13 C 0.12 3.50 4.33 45.61 0.20 3.70 16 14 H 0.10 2.90 7.46 -2.39 -0.02 2.89 16 15 N -0.69 -21.56 5.09 -442.71 -2.25 -23.81 16 16 C 0.56 18.79 7.76 86.71 0.67 19.46 16 17 O -0.56 -22.24 14.93 -3.99 -0.06 -22.30 16 18 C -0.16 -4.72 5.88 -20.06 -0.12 -4.84 16 19 C -0.02 -0.41 9.53 22.52 0.21 -0.19 16 20 C -0.12 -2.34 10.00 22.27 0.22 -2.12 16 21 C 0.13 2.95 7.31 22.49 0.16 3.11 16 22 F -0.11 -2.49 17.17 44.97 0.77 -1.71 16 23 C 0.01 0.39 7.30 22.41 0.16 0.55 16 24 F -0.12 -3.32 17.09 44.97 0.77 -2.55 16 25 C 0.14 4.15 7.29 22.70 0.17 4.32 16 26 F -0.11 -3.81 15.46 44.97 0.70 -3.11 16 27 C -0.14 -3.74 7.58 31.12 0.24 -3.50 16 28 H 0.25 12.84 8.31 -92.71 -0.77 12.07 16 29 H 0.37 16.04 5.36 -92.70 -0.50 15.54 16 30 H 0.11 2.78 8.14 -2.39 -0.02 2.76 16 31 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.41 12.78 4.18 -92.71 -0.39 12.39 16 33 H 0.17 4.08 6.40 -2.91 -0.02 4.06 16 34 H 0.19 2.83 8.06 -2.91 -0.02 2.81 16 35 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.13 2.52 8.14 -2.39 -0.02 2.50 16 Total: -1.00 -59.96 321.82 4.53 -55.42 By element: Atomic # 1 Polarization: 28.25 SS G_CDS: 0.29 Total: 28.53 kcal Atomic # 6 Polarization: 2.70 SS G_CDS: 3.67 Total: 6.37 kcal Atomic # 7 Polarization: -101.23 SS G_CDS: -3.63 Total: -104.85 kcal Atomic # 8 Polarization: -22.24 SS G_CDS: -0.06 Total: -22.30 kcal Atomic # 9 Polarization: -9.61 SS G_CDS: 2.24 Total: -7.38 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.21 kcal Total: -59.96 4.53 -55.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022624959.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.501 kcal (2) G-P(sol) polarization free energy of solvation -59.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds