Wall clock time and date at job start Tue Mar 31 2020 10:58:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 119.99715 * 2 1 4 4 H 1.48497 * 109.47006 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47370 * 300.00239 * 3 2 1 6 6 H 1.48498 * 109.47225 * 60.00456 * 3 2 1 7 7 C 1.38803 * 120.00302 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00463 * 179.97438 * 7 2 1 9 9 N 1.36947 * 120.00080 * 359.97438 * 7 2 1 10 10 C 1.46493 * 120.00135 * 180.02562 * 9 7 2 11 11 H 1.09001 * 112.85492 * 336.19750 * 10 9 7 12 12 C 1.53783 * 113.61261 * 107.50324 * 10 9 7 13 13 C 1.53785 * 87.08136 * 139.98044 * 12 10 9 14 14 H 1.08997 * 113.69213 * 89.12446 * 13 12 10 15 15 N 1.46496 * 113.61353 * 220.01939 * 13 12 10 16 16 C 1.34781 * 120.00170 * 252.49494 * 15 13 12 17 17 O 1.21599 * 119.99568 * 0.02562 * 16 15 13 18 18 C 1.47416 * 119.99965 * 180.02562 * 16 15 13 19 19 C 1.39980 * 120.16226 * 269.99867 * 18 16 15 20 20 F 1.35091 * 120.08407 * 0.25645 * 19 18 16 21 21 C 1.38105 * 119.82907 * 179.97438 * 19 18 16 22 22 C 1.38598 * 120.16536 * 0.02562 * 21 19 18 23 23 F 1.35106 * 119.83063 * 179.97438 * 22 21 19 24 24 C 1.38594 * 120.33362 * 0.02562 * 22 21 19 25 25 C 1.38102 * 120.16468 * 359.97438 * 24 22 21 26 26 F 1.35100 * 120.08237 * 179.97438 * 25 24 22 27 27 C 1.53784 * 113.61306 * 204.99948 * 10 9 7 28 28 H 0.97004 * 120.00232 * 359.97438 * 1 2 3 29 29 H 0.97002 * 119.99073 * 0.02562 * 9 7 2 30 30 H 1.09002 * 113.61261 * 25.43675 * 12 10 9 31 31 H 1.09002 * 113.61629 * 254.52574 * 12 10 9 32 32 H 0.97005 * 120.00258 * 72.50247 * 15 13 12 33 33 H 1.08002 * 119.91162 * 180.02562 * 21 19 18 34 34 H 1.07997 * 119.91671 * 179.97438 * 24 22 21 35 35 H 1.09000 * 113.61294 * 105.47413 * 27 10 9 36 36 H 1.08995 * 113.61596 * 334.56888 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8913 2.3966 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2020 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0581 -3.6567 -0.0005 11 1 3.0657 -3.5638 -0.4059 12 6 1.9991 -4.4021 1.3433 13 6 1.8480 -5.6976 0.5285 14 1 2.7979 -6.1645 0.2683 15 7 0.8876 -6.6432 1.1025 16 6 1.3252 -7.7706 1.6974 17 8 2.5173 -8.0027 1.7580 18 6 0.3587 -8.7224 2.2745 19 6 -0.0430 -8.5945 3.6093 20 9 0.4502 -7.5946 4.3720 21 6 -0.9493 -9.4897 4.1428 22 6 -1.4604 -10.5130 3.3602 23 9 -2.3463 -11.3853 3.8891 24 6 -1.0666 -10.6467 2.0381 25 6 -0.1611 -9.7592 1.4906 26 9 0.2220 -9.8913 0.2019 27 6 1.2602 -4.8287 -0.5960 28 1 -0.4851 0.8401 0.0004 29 1 0.3556 -2.3880 -0.0005 30 1 1.1207 -4.1569 1.9404 31 1 2.9272 -4.3501 1.9126 32 1 -0.0634 -6.4579 1.0544 33 1 -1.2605 -9.3920 5.1724 34 1 -1.4689 -11.4468 1.4345 35 1 1.5918 -5.1212 -1.5923 36 1 0.1799 -4.7002 -0.5291 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001022634315.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:09 Heat of formation + Delta-G solvation = -107.683194 kcal Electronic energy + Delta-G solvation = -25083.090990 eV Core-core repulsion = 20733.008988 eV Total energy + Delta-G solvation = -4350.082003 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 314.098 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.70044 -49.63213 -49.58205 -40.24887 -38.86904 -37.80467 -34.19217 -32.89478 -31.32541 -31.25534 -29.81455 -25.26641 -25.17228 -24.09669 -23.79910 -22.30297 -20.79812 -19.57947 -19.15854 -18.46824 -18.00149 -17.16881 -16.92791 -16.53689 -16.51765 -16.33640 -15.88563 -15.85382 -15.64236 -14.94154 -14.81559 -14.71013 -14.42254 -14.18207 -13.21602 -13.08307 -12.93303 -12.86615 -12.59158 -12.25364 -12.16164 -11.96458 -11.30576 -10.97866 -10.77145 -10.54778 -10.41117 -10.13644 -9.97547 -9.66393 -9.57467 -9.48545 -8.97307 -8.88134 -7.01735 -5.82819 -3.11898 -0.00227 0.19441 2.23903 2.42355 2.82411 3.00422 3.40761 3.47073 3.48939 3.51751 3.56860 4.08525 4.11705 4.26738 4.56492 4.92281 4.97929 5.01542 5.07060 5.08692 5.16451 5.26446 5.31749 5.43882 5.81487 5.86641 5.96075 6.05401 6.20993 6.26080 6.36792 6.57051 6.65482 6.99211 7.38980 7.67200 7.98594 8.35560 9.47156 10.03165 10.37654 11.39593 Molecular weight = 314.10amu Principal moments of inertia in cm(-1) A = 0.024339 B = 0.002634 C = 0.002553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.128669 B =10628.444428 C =10966.708904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.013 4.013 3 Si 0.908 3.092 4 H -0.279 1.279 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.244 4.244 8 H 0.073 0.927 9 N -0.710 5.710 10 C 0.170 3.830 11 H 0.081 0.919 12 C -0.176 4.176 13 C 0.115 3.885 14 H 0.112 0.888 15 N -0.697 5.697 16 C 0.564 3.436 17 O -0.520 6.520 18 C -0.208 4.208 19 C 0.199 3.801 20 F -0.107 7.107 21 C -0.203 4.203 22 C 0.178 3.822 23 F -0.117 7.117 24 C -0.203 4.203 25 C 0.197 3.803 26 F -0.110 7.110 27 C -0.158 4.158 28 H 0.255 0.745 29 H 0.385 0.615 30 H 0.081 0.919 31 H 0.061 0.939 32 H 0.402 0.598 33 H 0.164 0.836 34 H 0.163 0.837 35 H 0.069 0.931 36 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.983 -23.833 5.711 25.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.209 4.209 3 Si 0.739 3.261 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.375 4.375 8 H 0.091 0.909 9 N -0.348 5.348 10 C 0.057 3.943 11 H 0.099 0.901 12 C -0.218 4.218 13 C 0.011 3.989 14 H 0.130 0.870 15 N -0.346 5.346 16 C 0.347 3.653 17 O -0.396 6.396 18 C -0.214 4.214 19 C 0.178 3.822 20 F -0.085 7.085 21 C -0.222 4.222 22 C 0.158 3.842 23 F -0.096 7.096 24 C -0.223 4.223 25 C 0.176 3.824 26 F -0.088 7.088 27 C -0.198 4.198 28 H 0.065 0.935 29 H 0.219 0.781 30 H 0.099 0.901 31 H 0.080 0.920 32 H 0.237 0.763 33 H 0.181 0.819 34 H 0.181 0.819 35 H 0.087 0.913 36 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -3.980 -23.784 5.715 24.783 hybrid contribution -0.465 0.925 0.124 1.043 sum -4.445 -22.858 5.839 24.008 Atomic orbital electron populations 1.69666 1.05159 1.25698 1.57537 1.24768 0.95544 0.97842 1.02715 0.86106 0.78866 0.83962 0.77192 1.20455 1.21822 1.21824 1.19362 0.91196 0.84098 1.42856 0.90895 1.42365 1.05701 0.99765 1.86947 1.21341 0.95546 0.84928 0.92514 0.90067 1.24357 1.02079 0.94719 1.00636 1.22651 0.93127 0.87302 0.95848 0.86966 1.46064 1.10976 1.20561 1.56982 1.17610 0.87611 0.81339 0.78705 1.90841 1.15687 1.75667 1.57423 1.20097 1.05176 1.01436 0.94664 1.16787 0.92571 0.86061 0.86774 1.91650 1.85385 1.57329 1.74150 1.21031 1.01498 0.96545 1.03176 1.16905 0.88724 0.87927 0.90637 1.91599 1.64967 1.66744 1.86244 1.21000 1.02341 1.03421 0.95554 1.16757 0.93403 0.93209 0.79001 1.91629 1.89145 1.94870 1.33124 1.23880 1.01314 0.97161 0.97416 0.93480 0.78075 0.90052 0.92009 0.76290 0.81869 0.81929 0.91252 0.89853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.67 13.06 55.49 0.72 -26.95 16 2 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 3 Si 0.91 22.14 29.55 -169.99 -5.02 17.11 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 7 C -0.24 -6.66 9.97 -15.06 -0.15 -6.81 16 8 H 0.07 1.94 7.83 -52.48 -0.41 1.53 16 9 N -0.71 -17.28 5.40 -52.64 -0.28 -17.56 16 10 C 0.17 3.24 4.48 -67.12 -0.30 2.94 16 11 H 0.08 1.54 8.10 -51.93 -0.42 1.12 16 12 C -0.18 -3.04 7.68 -25.92 -0.20 -3.24 16 13 C 0.11 1.70 4.24 -67.12 -0.28 1.42 16 14 H 0.11 1.73 7.46 -51.93 -0.39 1.34 16 15 N -0.70 -9.15 5.35 -54.09 -0.29 -9.44 16 16 C 0.56 8.00 6.53 -12.52 -0.08 7.92 16 17 O -0.52 -9.28 16.71 5.28 0.09 -9.19 16 18 C -0.21 -2.29 5.64 -104.85 -0.59 -2.88 16 19 C 0.20 1.94 7.29 -38.98 -0.28 1.65 16 20 F -0.11 -1.24 16.83 2.25 0.04 -1.20 16 21 C -0.20 -1.44 9.99 -39.50 -0.39 -1.83 16 22 C 0.18 1.20 7.30 -39.32 -0.29 0.92 16 23 F -0.12 -0.80 17.26 2.25 0.04 -0.76 16 24 C -0.20 -1.37 9.99 -39.50 -0.39 -1.77 16 25 C 0.20 1.82 7.29 -38.98 -0.28 1.54 16 26 F -0.11 -1.15 16.83 2.25 0.04 -1.11 16 27 C -0.16 -2.42 7.58 -25.91 -0.20 -2.62 16 28 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 29 H 0.39 9.87 7.92 -40.82 -0.32 9.55 16 30 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 31 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.40 4.39 8.71 -40.82 -0.36 4.03 16 33 H 0.16 0.81 8.06 -52.49 -0.42 0.39 16 34 H 0.16 0.73 8.06 -52.49 -0.42 0.30 16 35 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.08 1.26 8.09 -51.93 -0.42 0.84 16 LS Contribution 332.74 15.07 5.01 5.01 Total: -1.00 -31.86 332.74 -6.77 -38.63 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: -3.57 Total: 8.68 kcal Atomic # 6 Polarization: 0.32 SS G_CDS: -3.54 Total: -3.22 kcal Atomic # 7 Polarization: -54.11 SS G_CDS: 0.15 Total: -53.95 kcal Atomic # 8 Polarization: -9.28 SS G_CDS: 0.09 Total: -9.19 kcal Atomic # 9 Polarization: -3.19 SS G_CDS: 0.11 Total: -3.07 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.86 -6.77 -38.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022634315.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.053 kcal (2) G-P(sol) polarization free energy of solvation -31.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds