Wall clock time and date at job start Tue Mar 31 2020 10:55:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86803 * 119.99910 * 2 1 4 4 H 1.48498 * 109.47158 * 269.99921 * 3 2 1 5 5 H 1.48506 * 109.47046 * 29.99926 * 3 2 1 6 6 H 1.48498 * 109.47300 * 149.99752 * 3 2 1 7 7 C 1.38813 * 120.00121 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99723 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99938 * 359.97438 * 7 2 1 10 10 C 1.47576 * 134.48997 * 180.02562 * 9 7 2 11 11 C 1.53944 * 86.11595 * 155.35859 * 10 9 7 12 12 N 1.46500 * 113.74529 * 137.95055 * 11 10 9 13 13 C 1.34780 * 120.00208 * 156.92077 * 12 11 10 14 14 O 1.21563 * 119.99851 * 0.02562 * 13 12 11 15 15 C 1.47692 * 119.99620 * 180.02562 * 13 12 11 16 16 C 1.39654 * 120.17167 * 359.97438 * 15 13 12 17 17 C 1.37852 * 119.88069 * 180.02562 * 16 15 13 18 18 C 1.38464 * 120.21691 * 0.02562 * 17 16 15 19 19 C 1.38205 * 120.33873 * 359.95882 * 18 17 16 20 20 C 1.50701 * 119.93684 * 180.02562 * 19 18 17 21 21 F 1.39902 * 109.46682 * 120.02502 * 20 19 18 22 22 F 1.39900 * 109.46929 * 240.01772 * 20 19 18 23 23 C 1.38312 * 120.11949 * 0.04212 * 19 18 17 24 24 F 1.35098 * 120.11469 * 180.25346 * 23 19 18 25 25 C 1.47813 * 134.45436 * 359.86763 * 9 7 2 26 26 H 0.96996 * 119.99860 * 359.97438 * 1 2 3 27 27 H 1.08999 * 113.77291 * 41.05942 * 10 9 7 28 28 H 1.09001 * 113.76573 * 269.65695 * 10 9 7 29 29 H 1.09004 * 113.74119 * 269.15316 * 11 10 9 30 30 H 0.97005 * 119.99573 * 336.92839 * 12 11 10 31 31 H 1.08004 * 120.06065 * 359.97438 * 16 15 13 32 32 H 1.08002 * 119.89327 * 179.97438 * 17 16 15 33 33 H 1.08005 * 119.82502 * 179.97438 * 18 17 16 34 34 H 1.08995 * 109.47554 * 0.02562 * 20 19 18 35 35 H 1.09001 * 113.76658 * 90.38445 * 25 9 7 36 36 H 1.09000 * 113.83719 * 318.91639 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 1.7203 -3.8101 -0.0005 11 6 0.3472 -4.0829 0.6398 12 7 -0.3332 -5.2613 0.0970 13 6 -1.2731 -5.8931 0.8278 14 8 -1.5565 -5.4849 1.9372 15 6 -1.9585 -7.0814 0.2806 16 6 -1.6360 -7.5531 -0.9937 17 6 -2.2799 -8.6624 -1.4987 18 6 -3.2456 -9.3101 -0.7469 19 6 -3.5716 -8.8513 0.5153 20 6 -4.6236 -9.5635 1.3259 21 9 -4.0593 -10.0243 2.5202 22 9 -5.6681 -8.6786 1.6147 23 6 -2.9343 -7.7395 1.0357 24 9 -3.2494 -7.2941 2.2716 25 6 -0.1057 -2.7570 0.0024 26 1 -0.4850 0.8400 0.0004 27 1 2.5625 -4.0323 0.6547 28 1 1.8320 -4.2350 -0.9981 29 1 0.3597 -4.0639 1.7296 30 1 -0.1072 -5.5869 -0.7884 31 1 -0.8840 -7.0491 -1.5828 32 1 -2.0309 -9.0271 -2.4844 33 1 -3.7464 -10.1784 -1.1490 34 1 -5.0104 -10.4088 0.7569 35 1 -0.5318 -2.8718 -0.9943 36 1 -0.7183 -2.1402 0.6599 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001030325591.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:55:32 Heat of formation + Delta-G solvation = -91.225008 kcal Electronic energy + Delta-G solvation = -25411.634651 eV Core-core repulsion = 21062.266329 eV Total energy + Delta-G solvation = -4349.368322 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 314.098 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.51142 -48.81213 -47.26549 -40.18996 -38.82119 -37.44454 -33.84144 -32.67287 -31.72518 -31.07406 -27.57975 -26.51176 -24.89535 -24.77506 -22.88342 -22.30353 -20.59474 -19.77651 -18.34974 -17.86304 -17.54386 -17.46679 -16.82444 -16.46727 -16.29018 -15.87160 -15.58551 -15.15010 -14.98283 -14.40961 -14.18707 -14.13400 -13.83721 -13.62213 -13.60691 -13.13515 -12.81365 -12.60237 -12.45280 -12.35630 -11.94381 -11.51987 -11.50509 -11.34850 -10.92249 -10.81242 -10.49137 -10.08901 -9.73230 -9.70965 -9.57210 -9.19629 -8.84063 -8.52880 -6.96060 -5.80090 -3.14630 0.27373 0.56258 2.57714 3.11296 3.29418 3.38442 3.42899 3.44182 3.45478 3.64655 3.79373 4.10221 4.34223 4.43488 4.47258 4.57656 4.64455 4.82085 5.02194 5.13605 5.40541 5.44686 5.51480 5.53407 5.59183 5.73377 5.95660 6.13793 6.23528 6.33704 6.49641 6.65078 7.19506 7.29469 7.51583 7.72306 7.93123 8.37204 8.99563 9.66077 10.51500 11.36537 Molecular weight = 314.10amu Principal moments of inertia in cm(-1) A = 0.030065 B = 0.002717 C = 0.002618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.106483 B =10302.462519 C =10691.040212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.006 4.006 3 Si 0.915 3.085 4 H -0.288 1.288 5 H -0.289 1.289 6 H -0.280 1.280 7 C -0.227 4.227 8 H 0.082 0.918 9 N -0.606 5.606 10 C 0.114 3.886 11 C 0.091 3.909 12 N -0.707 5.707 13 C 0.552 3.448 14 O -0.521 6.521 15 C -0.168 4.168 16 C -0.037 4.037 17 C -0.142 4.142 18 C -0.036 4.036 19 C -0.225 4.225 20 C 0.319 3.681 21 F -0.195 7.195 22 F -0.194 7.194 23 C 0.197 3.803 24 F -0.100 7.100 25 C 0.154 3.846 26 H 0.255 0.745 27 H 0.051 0.949 28 H 0.035 0.965 29 H 0.113 0.887 30 H 0.395 0.605 31 H 0.144 0.856 32 H 0.144 0.856 33 H 0.144 0.856 34 H 0.126 0.874 35 H 0.029 0.971 36 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.484 -24.197 -5.148 25.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.203 4.203 3 Si 0.745 3.255 4 H -0.216 1.216 5 H -0.215 1.215 6 H -0.205 1.205 7 C -0.355 4.355 8 H 0.100 0.900 9 N -0.333 5.333 10 C -0.013 4.013 11 C -0.013 4.013 12 N -0.358 5.358 13 C 0.337 3.663 14 O -0.398 6.398 15 C -0.172 4.172 16 C -0.055 4.055 17 C -0.160 4.160 18 C -0.055 4.055 19 C -0.226 4.226 20 C 0.265 3.735 21 F -0.176 7.176 22 F -0.175 7.175 23 C 0.176 3.824 24 F -0.078 7.078 25 C 0.028 3.972 26 H 0.065 0.935 27 H 0.069 0.931 28 H 0.053 0.947 29 H 0.131 0.869 30 H 0.230 0.770 31 H 0.162 0.838 32 H 0.162 0.838 33 H 0.162 0.838 34 H 0.143 0.857 35 H 0.047 0.953 36 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -7.658 -23.463 -4.218 25.039 hybrid contribution 0.463 0.907 -0.365 1.082 sum -7.194 -22.557 -4.583 24.116 Atomic orbital electron populations 1.69827 1.05063 1.25577 1.55926 1.24833 0.95704 0.97691 1.02038 0.86083 0.78637 0.83228 0.77559 1.21555 1.21530 1.20518 1.18977 0.90253 0.81552 1.44707 0.89992 1.45701 1.02361 0.99145 1.86077 1.22864 0.94524 0.86921 0.97030 1.24011 0.93369 0.83798 1.00141 1.46040 1.39357 1.30834 1.19544 1.17894 0.80351 0.82572 0.85501 1.90866 1.63572 1.66008 1.19337 1.20303 1.00658 0.99682 0.96579 1.21453 0.96919 0.94490 0.92678 1.21137 0.97356 0.96386 1.01089 1.20999 0.95125 0.98331 0.91025 1.20491 1.03741 0.99662 0.98747 1.20266 0.81550 0.89661 0.82017 1.93052 1.85744 1.89134 1.49695 1.93058 1.58795 1.71374 1.94311 1.17461 0.92749 0.91443 0.80708 1.91664 1.90631 1.87872 1.37611 1.22722 0.88220 0.89030 0.97262 0.93467 0.93090 0.94719 0.86918 0.77034 0.83822 0.83813 0.83823 0.85712 0.95289 0.90360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.50 11.39 55.49 0.63 -26.87 16 2 C -0.01 -0.16 5.50 -17.43 -0.10 -0.25 16 3 Si 0.91 22.15 29.55 -169.99 -5.02 17.13 16 4 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.23 -6.37 10.70 -15.06 -0.16 -6.53 16 8 H 0.08 2.19 7.83 -52.49 -0.41 1.78 16 9 N -0.61 -15.45 3.70 -177.92 -0.66 -16.11 16 10 C 0.11 2.22 8.69 -2.97 -0.03 2.19 16 11 C 0.09 1.77 4.40 -70.16 -0.31 1.46 16 12 N -0.71 -10.77 5.32 -56.35 -0.30 -11.07 16 13 C 0.55 9.17 7.77 -12.40 -0.10 9.08 16 14 O -0.52 -11.06 14.96 5.31 0.08 -10.98 16 15 C -0.17 -2.15 5.88 -104.91 -0.62 -2.77 16 16 C -0.04 -0.30 9.54 -39.19 -0.37 -0.68 16 17 C -0.14 -0.83 10.03 -39.64 -0.40 -1.23 16 18 C -0.04 -0.22 9.66 -39.51 -0.38 -0.60 16 19 C -0.22 -2.15 5.37 -104.61 -0.56 -2.71 16 20 C 0.32 2.78 5.16 36.01 0.19 2.96 16 21 F -0.20 -2.19 17.06 2.25 0.04 -2.16 16 22 F -0.19 -2.24 17.08 2.25 0.04 -2.20 16 23 C 0.20 2.66 7.11 -38.96 -0.28 2.39 16 24 F -0.10 -1.70 14.74 2.25 0.03 -1.67 16 25 C 0.15 3.68 7.33 -2.85 -0.02 3.66 16 26 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 27 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.04 0.61 8.11 -51.93 -0.42 0.19 16 29 H 0.11 2.40 7.51 -51.93 -0.39 2.01 16 30 H 0.39 4.54 6.75 -40.82 -0.28 4.26 16 31 H 0.14 0.85 6.41 -52.48 -0.34 0.52 16 32 H 0.14 0.39 8.06 -52.49 -0.42 -0.03 16 33 H 0.14 0.29 7.94 -52.48 -0.42 -0.13 16 34 H 0.13 0.45 7.87 -51.93 -0.41 0.04 16 35 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.08 2.15 7.17 -51.93 -0.37 1.77 16 LS Contribution 324.48 15.07 4.89 4.89 Total: -1.00 -36.31 324.48 -6.84 -43.14 By element: Atomic # 1 Polarization: 2.36 SS G_CDS: -3.43 Total: -1.07 kcal Atomic # 6 Polarization: 10.10 SS G_CDS: -3.13 Total: 6.97 kcal Atomic # 7 Polarization: -53.72 SS G_CDS: -0.33 Total: -54.05 kcal Atomic # 8 Polarization: -11.06 SS G_CDS: 0.08 Total: -10.98 kcal Atomic # 9 Polarization: -6.13 SS G_CDS: 0.11 Total: -6.02 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -36.31 -6.84 -43.14 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030325591.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.083 kcal (2) G-P(sol) polarization free energy of solvation -36.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds