Wall clock time and date at job start Tue Mar 31 2020 10:55:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86803 * 119.99910 * 2 1 4 4 H 1.48498 * 109.47158 * 269.99921 * 3 2 1 5 5 H 1.48506 * 109.47046 * 29.99926 * 3 2 1 6 6 H 1.48498 * 109.47300 * 149.99752 * 3 2 1 7 7 C 1.38813 * 120.00121 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99723 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99938 * 359.97438 * 7 2 1 10 10 C 1.47576 * 134.48997 * 180.02562 * 9 7 2 11 11 C 1.53944 * 86.11595 * 155.35859 * 10 9 7 12 12 N 1.46500 * 113.74529 * 137.95055 * 11 10 9 13 13 C 1.34780 * 120.00208 * 156.92077 * 12 11 10 14 14 O 1.21563 * 119.99851 * 0.02562 * 13 12 11 15 15 C 1.47692 * 119.99620 * 180.02562 * 13 12 11 16 16 C 1.39654 * 120.17167 * 359.97438 * 15 13 12 17 17 C 1.37852 * 119.88069 * 180.02562 * 16 15 13 18 18 C 1.38464 * 120.21691 * 0.02562 * 17 16 15 19 19 C 1.38205 * 120.33873 * 359.95882 * 18 17 16 20 20 C 1.50701 * 119.93684 * 180.02562 * 19 18 17 21 21 F 1.39902 * 109.46682 * 120.02502 * 20 19 18 22 22 F 1.39900 * 109.46929 * 240.01772 * 20 19 18 23 23 C 1.38312 * 120.11949 * 0.04212 * 19 18 17 24 24 F 1.35098 * 120.11469 * 180.25346 * 23 19 18 25 25 C 1.47813 * 134.45436 * 359.86763 * 9 7 2 26 26 H 0.96996 * 119.99860 * 359.97438 * 1 2 3 27 27 H 1.08999 * 113.77291 * 41.05942 * 10 9 7 28 28 H 1.09001 * 113.76573 * 269.65695 * 10 9 7 29 29 H 1.09004 * 113.74119 * 269.15316 * 11 10 9 30 30 H 0.97005 * 119.99573 * 336.92839 * 12 11 10 31 31 H 1.08004 * 120.06065 * 359.97438 * 16 15 13 32 32 H 1.08002 * 119.89327 * 179.97438 * 17 16 15 33 33 H 1.08005 * 119.82502 * 179.97438 * 18 17 16 34 34 H 1.08995 * 109.47554 * 0.02562 * 20 19 18 35 35 H 1.09001 * 113.76658 * 90.38445 * 25 9 7 36 36 H 1.09000 * 113.83719 * 318.91639 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 1.7203 -3.8101 -0.0005 11 6 0.3472 -4.0829 0.6398 12 7 -0.3332 -5.2613 0.0970 13 6 -1.2731 -5.8931 0.8278 14 8 -1.5565 -5.4849 1.9372 15 6 -1.9585 -7.0814 0.2806 16 6 -1.6360 -7.5531 -0.9937 17 6 -2.2799 -8.6624 -1.4987 18 6 -3.2456 -9.3101 -0.7469 19 6 -3.5716 -8.8513 0.5153 20 6 -4.6236 -9.5635 1.3259 21 9 -4.0593 -10.0243 2.5202 22 9 -5.6681 -8.6786 1.6147 23 6 -2.9343 -7.7395 1.0357 24 9 -3.2494 -7.2941 2.2716 25 6 -0.1057 -2.7570 0.0024 26 1 -0.4850 0.8400 0.0004 27 1 2.5625 -4.0323 0.6547 28 1 1.8320 -4.2350 -0.9981 29 1 0.3597 -4.0639 1.7296 30 1 -0.1072 -5.5869 -0.7884 31 1 -0.8840 -7.0491 -1.5828 32 1 -2.0309 -9.0271 -2.4844 33 1 -3.7464 -10.1784 -1.1490 34 1 -5.0104 -10.4088 0.7569 35 1 -0.5318 -2.8718 -0.9943 36 1 -0.7183 -2.1402 0.6599 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001030325591.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:55:31 Heat of formation + Delta-G solvation = -117.368230 kcal Electronic energy + Delta-G solvation = -25412.768306 eV Core-core repulsion = 21062.266329 eV Total energy + Delta-G solvation = -4350.501977 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 314.098 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -50.38340 -49.71793 -48.03288 -41.35926 -39.92824 -38.97602 -35.34559 -34.07835 -33.09216 -31.83123 -29.47610 -27.21999 -26.66459 -25.98777 -24.43352 -23.00437 -21.82051 -21.44239 -19.30722 -18.81473 -18.66074 -18.31431 -18.29445 -17.43433 -17.35742 -17.02591 -16.86630 -16.79806 -15.87227 -15.77609 -15.65446 -15.43672 -14.92951 -14.62940 -14.42784 -14.41001 -13.98040 -13.71027 -13.45604 -13.31876 -13.24357 -13.11734 -12.94017 -12.86053 -12.65941 -12.33354 -12.03016 -11.98014 -11.57021 -11.09035 -10.90888 -10.44825 -10.09424 -9.87452 -9.00359 -7.93968 -5.29759 -0.44987 -0.15414 1.44447 1.47503 1.56210 1.65032 1.94194 2.46868 2.49925 2.63358 2.96521 3.17925 3.21460 3.31779 3.44867 3.64359 3.78911 3.87250 3.97077 3.99864 4.20044 4.27681 4.44080 4.51412 4.71355 4.77524 4.85287 4.87609 5.05336 5.06504 5.16582 5.20006 5.45048 5.60416 5.65288 5.86276 6.45521 6.85328 7.12810 7.55989 8.48034 9.22836 Molecular weight = 314.10amu Principal moments of inertia in cm(-1) A = 0.030065 B = 0.002717 C = 0.002618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.106483 B =10302.462519 C =10691.040212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.071 4.071 3 Si 0.984 3.016 4 H -0.282 1.282 5 H -0.298 1.298 6 H -0.265 1.265 7 C -0.235 4.235 8 H 0.093 0.907 9 N -0.638 5.638 10 C 0.126 3.874 11 C 0.117 3.883 12 N -0.690 5.690 13 C 0.548 3.452 14 O -0.582 6.582 15 C -0.195 4.195 16 C -0.031 4.031 17 C -0.122 4.122 18 C -0.011 4.011 19 C -0.231 4.231 20 C 0.306 3.694 21 F -0.216 7.216 22 F -0.217 7.217 23 C 0.149 3.851 24 F -0.138 7.138 25 C 0.152 3.848 26 H 0.248 0.752 27 H 0.066 0.934 28 H 0.075 0.925 29 H 0.087 0.913 30 H 0.417 0.583 31 H 0.169 0.831 32 H 0.193 0.807 33 H 0.200 0.800 34 H 0.190 0.810 35 H 0.031 0.969 36 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.552 -27.528 -8.596 29.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.605 5.605 2 C -0.263 4.263 3 Si 0.812 3.188 4 H -0.209 1.209 5 H -0.225 1.225 6 H -0.190 1.190 7 C -0.363 4.363 8 H 0.111 0.889 9 N -0.366 5.366 10 C 0.001 3.999 11 C 0.011 3.989 12 N -0.342 5.342 13 C 0.336 3.664 14 O -0.462 6.462 15 C -0.200 4.200 16 C -0.050 4.050 17 C -0.140 4.140 18 C -0.029 4.029 19 C -0.233 4.233 20 C 0.253 3.747 21 F -0.197 7.197 22 F -0.199 7.199 23 C 0.128 3.872 24 F -0.117 7.117 25 C 0.025 3.975 26 H 0.057 0.943 27 H 0.084 0.916 28 H 0.092 0.908 29 H 0.105 0.895 30 H 0.256 0.744 31 H 0.187 0.813 32 H 0.210 0.790 33 H 0.217 0.783 34 H 0.206 0.794 35 H 0.049 0.951 36 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -6.688 -26.861 -7.714 28.736 hybrid contribution 0.146 1.774 0.621 1.885 sum -6.542 -25.087 -7.092 26.879 Atomic orbital electron populations 1.70048 1.06740 1.25728 1.57953 1.25748 0.96552 1.01330 1.02718 0.84997 0.77623 0.78573 0.77632 1.20852 1.22482 1.18951 1.19446 0.91037 0.82792 1.43026 0.88945 1.46017 1.03170 1.00933 1.86435 1.23015 0.94428 0.83439 0.98996 1.23252 0.93607 0.83526 0.98550 1.45672 1.38810 1.29298 1.20409 1.18596 0.79746 0.83346 0.84715 1.90830 1.65338 1.67960 1.22102 1.20057 1.01935 0.99089 0.98878 1.21826 0.97303 0.95275 0.90585 1.21752 0.95422 0.94306 1.02502 1.21712 0.93788 0.98741 0.88657 1.20829 1.03639 0.98479 1.00355 1.21114 0.80968 0.90983 0.81613 1.93005 1.86142 1.89277 1.51308 1.93008 1.59786 1.72563 1.94500 1.18125 0.94967 0.93910 0.80175 1.91556 1.91266 1.88723 1.40120 1.22595 0.87481 0.90814 0.96615 0.94306 0.91598 0.90793 0.89479 0.74382 0.81348 0.78960 0.78323 0.79359 0.95107 0.95234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.72 11.39 21.65 0.25 -59.47 16 2 C -0.07 -4.10 5.50 84.86 0.47 -3.63 16 3 Si 0.98 46.30 29.55 68.60 2.03 48.32 16 4 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 5 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 6 H -0.26 -11.67 7.11 99.48 0.71 -10.97 16 7 C -0.23 -13.22 10.70 84.03 0.90 -12.32 16 8 H 0.09 4.86 7.83 -2.91 -0.02 4.84 16 9 N -0.64 -32.85 3.70 -716.81 -2.65 -35.51 16 10 C 0.13 4.75 8.69 86.49 0.75 5.50 16 11 C 0.12 4.64 4.40 46.75 0.21 4.84 16 12 N -0.69 -20.86 5.32 -450.47 -2.40 -23.25 16 13 C 0.55 19.01 7.77 86.74 0.67 19.68 16 14 O -0.58 -26.87 14.96 -3.91 -0.06 -26.93 16 15 C -0.20 -4.96 5.88 -20.05 -0.12 -5.08 16 16 C -0.03 -0.41 9.54 22.52 0.21 -0.19 16 17 C -0.12 -0.68 10.03 22.23 0.22 -0.46 16 18 C -0.01 -0.07 9.66 22.32 0.22 0.15 16 19 C -0.23 -3.92 5.37 -19.85 -0.11 -4.02 16 20 C 0.31 4.74 5.16 71.24 0.37 5.11 16 21 F -0.22 -4.82 17.06 44.97 0.77 -4.05 16 22 F -0.22 -5.00 17.08 44.97 0.77 -4.24 16 23 C 0.15 4.13 7.11 22.67 0.16 4.29 16 24 F -0.14 -5.19 14.74 44.97 0.66 -4.53 16 25 C 0.15 7.55 7.33 86.44 0.63 8.18 16 26 H 0.25 15.09 8.31 -92.71 -0.77 14.32 16 27 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 28 H 0.07 2.28 8.11 -2.39 -0.02 2.27 16 29 H 0.09 3.95 7.51 -2.39 -0.02 3.93 16 30 H 0.42 8.62 6.75 -92.70 -0.63 7.99 16 31 H 0.17 1.22 6.41 -2.91 -0.02 1.20 16 32 H 0.19 -0.63 8.06 -2.91 -0.02 -0.65 16 33 H 0.20 -0.92 7.94 -2.91 -0.02 -0.94 16 34 H 0.19 0.42 7.87 -2.39 -0.02 0.40 16 35 H 0.03 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.03 1.74 7.17 -2.39 -0.02 1.72 16 Total: -1.00 -89.94 324.48 4.47 -85.47 By element: Atomic # 1 Polarization: 1.64 SS G_CDS: 0.52 Total: 2.16 kcal Atomic # 6 Polarization: 17.44 SS G_CDS: 4.59 Total: 22.03 kcal Atomic # 7 Polarization: -113.43 SS G_CDS: -4.81 Total: -118.24 kcal Atomic # 8 Polarization: -26.87 SS G_CDS: -0.06 Total: -26.93 kcal Atomic # 9 Polarization: -15.02 SS G_CDS: 2.20 Total: -12.82 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 2.03 Total: 48.32 kcal Total: -89.94 4.47 -85.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030325591.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.898 kcal (2) G-P(sol) polarization free energy of solvation -89.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds