Wall clock time and date at job start Tue Mar 31 2020 10:38:37
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42897 * 1
3 3 C 1.42901 * 113.99838 * 2 1
4 4 H 1.09003 * 110.91418 * 26.09854 * 3 2 1
5 5 C 1.55124 * 111.16371 * 262.16725 * 3 2 1
6 6 N 1.47428 * 104.94370 * 205.12941 * 5 3 2
7 7 C 1.36931 * 125.64659 * 203.97014 * 6 5 3
8 8 H 1.07997 * 119.99908 * 180.02562 * 7 6 5
9 9 C 1.38810 * 120.00209 * 0.03903 * 7 6 5
10 10 N 1.31612 * 120.00116 * 0.02562 * 9 7 6
11 11 Si 1.86801 * 119.99973 * 180.02562 * 9 7 6
12 12 H 1.48497 * 109.47071 * 90.00236 * 11 9 7
13 13 H 1.48501 * 109.47069 * 210.00232 * 11 9 7
14 14 H 1.48503 * 109.47117 * 330.00137 * 11 9 7
15 15 C 1.47019 * 108.70257 * 24.00118 * 6 5 3
16 16 C 1.54322 * 107.27316 * 358.94487 * 15 6 5
17 17 H 1.09000 * 110.72720 * 96.34153 * 16 15 6
18 18 N 1.46507 * 110.72338 * 219.44392 * 16 15 6
19 19 C 1.34778 * 119.99364 * 271.15938 * 18 16 15
20 20 O 1.21733 * 120.00585 * 359.97438 * 19 18 16
21 21 C 1.46342 * 119.99575 * 179.97438 * 19 18 16
22 22 C 1.36733 * 125.43728 * 179.97438 * 21 19 18
23 23 C 1.37342 * 113.33440 * 179.97438 * 22 21 19
24 24 C 1.34214 * 115.04458 * 359.97438 * 23 22 21
25 25 F 1.35098 * 124.54112 * 179.73371 * 24 23 22
26 26 S 1.70610 * 110.91583 * 0.02562 * 24 23 22
27 27 H 1.09009 * 109.46487 * 179.97438 * 1 2 3
28 28 H 1.08991 * 109.47459 * 300.00142 * 1 2 3
29 29 H 1.09005 * 109.46781 * 60.00557 * 1 2 3
30 30 H 1.09001 * 110.41706 * 86.20150 * 5 3 2
31 31 H 1.08994 * 110.20375 * 323.95372 * 5 3 2
32 32 H 0.97001 * 120.00420 * 179.97438 * 10 9 7
33 33 H 1.08997 * 109.88702 * 239.52068 * 15 6 5
34 34 H 1.09005 * 109.88415 * 118.35689 * 15 6 5
35 35 H 0.96995 * 120.00407 * 91.14921 * 18 16 15
36 36 H 1.08000 * 123.33600 * 359.97438 * 22 21 19
37 37 H 1.07996 * 122.48062 * 179.97438 * 23 22 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0102 1.3055 0.0000
4 1 1.3331 2.0328 0.4479
5 6 2.4181 1.7369 -1.4331
6 7 3.4966 2.7234 -1.2407
7 6 3.8524 3.7008 -2.1313
8 1 4.6607 4.3773 -1.8961
9 6 3.1740 3.8223 -3.3362
10 7 2.1884 2.9983 -3.6224
11 14 3.6598 5.1552 -4.5514
12 1 4.6978 4.6294 -5.4740
13 1 2.4675 5.5709 -5.3329
14 1 4.2003 6.3249 -3.8132
15 6 4.1274 2.4835 0.0655
16 6 3.3824 1.3035 0.7243
17 1 3.9105 0.3666 0.5471
18 7 3.2106 1.5358 2.1606
19 6 4.1626 1.1353 3.0265
20 8 5.1649 0.5801 2.6153
21 6 3.9913 1.3678 4.4611
22 6 4.8821 1.0089 5.4344
23 6 4.4709 1.3482 6.7001
24 6 3.2813 1.9662 6.7645
25 9 2.6931 2.3783 7.9088
26 16 2.6077 2.1544 5.2084
27 1 -0.3632 -1.0278 -0.0005
28 1 -0.3634 0.5138 0.8899
29 1 -0.3633 0.5138 -0.8901
30 1 1.5729 2.1944 -1.9475
31 1 2.7853 0.8780 -1.9947
32 1 1.7140 3.0834 -4.4642
33 1 4.0383 3.3729 0.6892
34 1 5.1782 2.2282 -0.0716
35 1 2.4119 1.9780 2.4883
36 1 5.8166 0.5082 5.2282
37 1 5.0612 1.1335 7.5787
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001082394212.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:38:37
Heat of formation + Delta-G solvation = -49.678238 kcal
Electronic energy + Delta-G solvation = -23589.708786 eV
Core-core repulsion = 19795.982454 eV
Total energy + Delta-G solvation = -3793.726332 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 314.089 amu
Computer time = 0.88 seconds
Orbital eigenvalues (eV)
-49.44150 -39.94507 -38.40425 -37.47092 -35.94522 -34.17276 -31.91828 -29.92951
-28.72876 -27.17663 -26.12009 -25.26674 -24.16656 -22.00976 -20.77546 -20.06916
-19.96891 -19.12979 -17.33684 -16.84895 -16.72444 -16.34099 -16.19373 -15.48692
-14.93953 -14.87963 -14.79989 -14.52619 -14.31546 -14.07166 -13.53509 -13.24236
-12.95049 -12.62442 -12.39079 -12.26922 -11.92544 -11.53556 -11.38222 -11.30977
-11.06240 -10.85794 -10.81595 -10.25604 -10.08955 -9.94010 -9.85012 -9.23090
-9.11771 -9.04210 -8.75499 -8.72526 -6.93566 -5.72542 -3.15711 0.02179
0.63593 1.27054 1.92665 3.08891 3.12349 3.37651 3.42760 3.44339
3.93686 4.06782 4.45944 4.63840 4.91430 4.95003 5.13457 5.37679
5.45232 5.45389 5.56153 5.60885 5.63225 5.67960 5.78862 5.84055
5.90921 6.02043 6.13463 6.35702 6.63140 6.79473 7.21081 7.45489
7.54403 7.69009 7.75246 8.14768 8.24287 9.12944 9.73213 10.35293
11.31331
Molecular weight = 314.09amu
Principal moments of inertia in cm(-1)
A = 0.018827 B = 0.003296 C = 0.003096
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1486.903801 B = 8494.184488 C = 9042.934104
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.034 3.966
2 O -0.380 6.380
3 C 0.054 3.946
4 H 0.067 0.933
5 C 0.142 3.858
6 N -0.600 5.600
7 C -0.224 4.224
8 H 0.081 0.919
9 C -0.009 4.009
10 N -0.923 5.923
11 Si 0.918 3.082
12 H -0.288 1.288
13 H -0.290 1.290
14 H -0.281 1.281
15 C 0.130 3.870
16 C 0.135 3.865
17 H 0.107 0.893
18 N -0.709 5.709
19 C 0.590 3.410
20 O -0.521 6.521
21 C -0.250 4.250
22 C -0.040 4.040
23 C -0.180 4.180
24 C -0.027 4.027
25 F -0.100 7.100
26 S 0.225 5.775
27 H 0.079 0.921
28 H 0.033 0.967
29 H 0.047 0.953
30 H 0.114 0.886
31 H 0.028 0.972
32 H 0.254 0.746
33 H 0.031 0.969
34 H 0.036 0.964
35 H 0.394 0.606
36 H 0.166 0.834
37 H 0.158 0.842
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.753 -3.437 19.252 19.750
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.062 4.062
2 O -0.298 6.298
3 C -0.006 4.006
4 H 0.085 0.915
5 C 0.017 3.983
6 N -0.328 5.328
7 C -0.352 4.352
8 H 0.099 0.901
9 C -0.205 4.205
10 N -0.571 5.571
11 Si 0.748 3.252
12 H -0.215 1.215
13 H -0.216 1.216
14 H -0.206 1.206
15 C 0.003 3.997
16 C 0.031 3.969
17 H 0.124 0.876
18 N -0.359 5.359
19 C 0.375 3.625
20 O -0.398 6.398
21 C -0.372 4.372
22 C -0.072 4.072
23 C -0.213 4.213
24 C -0.164 4.164
25 F -0.079 7.079
26 S 0.489 5.511
27 H 0.098 0.902
28 H 0.052 0.948
29 H 0.065 0.935
30 H 0.131 0.869
31 H 0.046 0.954
32 H 0.064 0.936
33 H 0.048 0.952
34 H 0.054 0.946
35 H 0.228 0.772
36 H 0.183 0.817
37 H 0.176 0.824
Dipole moment (debyes) X Y Z Total
from point charges -3.361 -3.270 18.241 18.834
hybrid contribution 0.843 0.560 0.549 1.152
sum -2.518 -2.710 18.790 19.151
Atomic orbital electron populations
1.22722 0.81543 1.02033 0.99946 1.87853 1.19256 1.27586 1.95067
1.24085 0.92470 0.83852 1.00172 0.91468 1.22338 0.94622 0.92122
0.89260 1.44295 1.37092 1.35706 1.15699 1.19094 1.13803 1.06279
0.95976 0.90147 1.24801 0.98462 0.99378 0.97858 1.69740 1.24424
1.38837 1.24107 0.86027 0.77346 0.80882 0.80965 1.21498 1.21622
1.20630 1.21608 0.95935 0.93932 0.88219 1.22274 0.97165 1.00556
0.76929 0.87550 1.45913 1.21821 1.60577 1.07615 1.16751 0.83553
0.78872 0.83288 1.90869 1.28477 1.42383 1.78115 1.24656 1.00914
1.13282 0.98299 1.20505 1.00023 0.97251 0.89395 1.20300 0.96487
1.04212 1.00259 1.21953 0.98224 1.07980 0.88288 1.91536 1.82828
1.88243 1.45312 1.83474 1.19306 1.54716 0.93610 0.90222 0.94796
0.93463 0.86879 0.95445 0.93566 0.95155 0.94612 0.77206 0.81706
0.82433
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 25.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.47 10.85 101.05 1.10 1.57 16
2 O -0.38 -6.75 10.52 -35.23 -0.37 -7.12 16
3 C 0.05 1.00 3.17 -24.46 -0.08 0.93 16
4 H 0.07 1.16 7.69 -51.93 -0.40 0.76 16
5 C 0.14 3.39 5.63 -2.41 -0.01 3.38 16
6 N -0.60 -15.15 3.40 -169.94 -0.58 -15.72 16
7 C -0.22 -6.12 10.27 -15.06 -0.15 -6.27 16
8 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16
9 C -0.01 -0.26 5.49 -17.43 -0.10 -0.36 16
10 N -0.92 -26.16 10.09 55.49 0.56 -25.60 16
11 Si 0.92 21.66 29.55 -169.99 -5.02 16.64 16
12 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16
13 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16
14 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16
15 C 0.13 2.77 7.00 -3.07 -0.02 2.75 16
16 C 0.14 2.49 3.00 -66.09 -0.20 2.29 16
17 H 0.11 2.14 7.62 -51.93 -0.40 1.75 16
18 N -0.71 -10.62 5.11 -53.43 -0.27 -10.89 16
19 C 0.59 9.00 7.77 -13.00 -0.10 8.89 16
20 O -0.52 -9.72 16.52 5.16 0.09 -9.63 16
21 C -0.25 -2.96 6.44 -36.87 -0.24 -3.20 16
22 C -0.04 -0.41 10.00 -40.45 -0.40 -0.81 16
23 C -0.18 -1.58 10.16 -41.33 -0.42 -2.00 16
24 C -0.03 -0.25 8.10 29.31 0.24 -0.02 16
25 F -0.10 -0.99 17.32 2.25 0.04 -0.95 16
26 S 0.22 2.09 22.14 -107.50 -2.38 -0.29 16
27 H 0.08 0.92 8.14 -51.92 -0.42 0.50 16
28 H 0.03 0.40 8.12 -51.93 -0.42 -0.03 16
29 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16
30 H 0.11 2.97 5.87 -51.93 -0.30 2.66 16
31 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16
32 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16
33 H 0.03 0.63 8.03 -51.93 -0.42 0.21 16
34 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16
35 H 0.39 4.90 7.64 -40.82 -0.31 4.59 16
36 H 0.17 1.55 8.06 -52.49 -0.42 1.13 16
37 H 0.16 1.02 8.06 -52.49 -0.42 0.59 16
LS Contribution 333.67 15.07 5.03 5.03
Total: -1.00 -31.26 333.67 -7.64 -38.90
By element:
Atomic # 1 Polarization: 6.81 SS G_CDS: -4.33 Total: 2.48 kcal
Atomic # 6 Polarization: 7.55 SS G_CDS: -0.39 Total: 7.16 kcal
Atomic # 7 Polarization: -51.92 SS G_CDS: -0.29 Total: -52.21 kcal
Atomic # 8 Polarization: -16.47 SS G_CDS: -0.29 Total: -16.76 kcal
Atomic # 9 Polarization: -0.99 SS G_CDS: 0.04 Total: -0.95 kcal
Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal
Atomic # 16 Polarization: 2.09 SS G_CDS: -2.38 Total: -0.29 kcal
Total LS contribution 5.03 Total: 5.03 kcal
Total: -31.26 -7.64 -38.90 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001082394212.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -10.777 kcal
(2) G-P(sol) polarization free energy of solvation -31.264 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.041 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.637 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.902 kcal
(6) G-S(sol) free energy of system = (1) + (5) -49.678 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.88 seconds