Wall clock time and date at job start Tue Mar 31 2020 10:38:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42901 * 113.99838 * 2 1 4 4 H 1.09003 * 110.91418 * 26.09854 * 3 2 1 5 5 C 1.55124 * 111.16371 * 262.16725 * 3 2 1 6 6 N 1.47428 * 104.94370 * 205.12941 * 5 3 2 7 7 C 1.36931 * 125.64659 * 203.97014 * 6 5 3 8 8 H 1.07997 * 119.99908 * 180.02562 * 7 6 5 9 9 C 1.38810 * 120.00209 * 0.03903 * 7 6 5 10 10 N 1.31612 * 120.00116 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 119.99973 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47071 * 90.00236 * 11 9 7 13 13 H 1.48501 * 109.47069 * 210.00232 * 11 9 7 14 14 H 1.48503 * 109.47117 * 330.00137 * 11 9 7 15 15 C 1.47019 * 108.70257 * 24.00118 * 6 5 3 16 16 C 1.54322 * 107.27316 * 358.94487 * 15 6 5 17 17 H 1.09000 * 110.72720 * 96.34153 * 16 15 6 18 18 N 1.46507 * 110.72338 * 219.44392 * 16 15 6 19 19 C 1.34778 * 119.99364 * 271.15938 * 18 16 15 20 20 O 1.21733 * 120.00585 * 359.97438 * 19 18 16 21 21 C 1.46342 * 119.99575 * 179.97438 * 19 18 16 22 22 C 1.36733 * 125.43728 * 179.97438 * 21 19 18 23 23 C 1.37342 * 113.33440 * 179.97438 * 22 21 19 24 24 C 1.34214 * 115.04458 * 359.97438 * 23 22 21 25 25 F 1.35098 * 124.54112 * 179.73371 * 24 23 22 26 26 S 1.70610 * 110.91583 * 0.02562 * 24 23 22 27 27 H 1.09009 * 109.46487 * 179.97438 * 1 2 3 28 28 H 1.08991 * 109.47459 * 300.00142 * 1 2 3 29 29 H 1.09005 * 109.46781 * 60.00557 * 1 2 3 30 30 H 1.09001 * 110.41706 * 86.20150 * 5 3 2 31 31 H 1.08994 * 110.20375 * 323.95372 * 5 3 2 32 32 H 0.97001 * 120.00420 * 179.97438 * 10 9 7 33 33 H 1.08997 * 109.88702 * 239.52068 * 15 6 5 34 34 H 1.09005 * 109.88415 * 118.35689 * 15 6 5 35 35 H 0.96995 * 120.00407 * 91.14921 * 18 16 15 36 36 H 1.08000 * 123.33600 * 359.97438 * 22 21 19 37 37 H 1.07996 * 122.48062 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3331 2.0328 0.4479 5 6 2.4181 1.7369 -1.4331 6 7 3.4966 2.7234 -1.2407 7 6 3.8524 3.7008 -2.1313 8 1 4.6607 4.3773 -1.8961 9 6 3.1740 3.8223 -3.3362 10 7 2.1884 2.9983 -3.6224 11 14 3.6598 5.1552 -4.5514 12 1 4.6978 4.6294 -5.4740 13 1 2.4675 5.5709 -5.3329 14 1 4.2003 6.3249 -3.8132 15 6 4.1274 2.4835 0.0655 16 6 3.3824 1.3035 0.7243 17 1 3.9105 0.3666 0.5471 18 7 3.2106 1.5358 2.1606 19 6 4.1626 1.1353 3.0265 20 8 5.1649 0.5801 2.6153 21 6 3.9913 1.3678 4.4611 22 6 4.8821 1.0089 5.4344 23 6 4.4709 1.3482 6.7001 24 6 3.2813 1.9662 6.7645 25 9 2.6931 2.3783 7.9088 26 16 2.6077 2.1544 5.2084 27 1 -0.3632 -1.0278 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.5729 2.1944 -1.9475 31 1 2.7853 0.8780 -1.9947 32 1 1.7140 3.0834 -4.4642 33 1 4.0383 3.3729 0.6892 34 1 5.1782 2.2282 -0.0716 35 1 2.4119 1.9780 2.4883 36 1 5.8166 0.5082 5.2282 37 1 5.0612 1.1335 7.5787 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001082394212.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:38:37 Heat of formation + Delta-G solvation = -49.678238 kcal Electronic energy + Delta-G solvation = -23589.708786 eV Core-core repulsion = 19795.982454 eV Total energy + Delta-G solvation = -3793.726332 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.089 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -49.44150 -39.94507 -38.40425 -37.47092 -35.94522 -34.17276 -31.91828 -29.92951 -28.72876 -27.17663 -26.12009 -25.26674 -24.16656 -22.00976 -20.77546 -20.06916 -19.96891 -19.12979 -17.33684 -16.84895 -16.72444 -16.34099 -16.19373 -15.48692 -14.93953 -14.87963 -14.79989 -14.52619 -14.31546 -14.07166 -13.53509 -13.24236 -12.95049 -12.62442 -12.39079 -12.26922 -11.92544 -11.53556 -11.38222 -11.30977 -11.06240 -10.85794 -10.81595 -10.25604 -10.08955 -9.94010 -9.85012 -9.23090 -9.11771 -9.04210 -8.75499 -8.72526 -6.93566 -5.72542 -3.15711 0.02179 0.63593 1.27054 1.92665 3.08891 3.12349 3.37651 3.42760 3.44339 3.93686 4.06782 4.45944 4.63840 4.91430 4.95003 5.13457 5.37679 5.45232 5.45389 5.56153 5.60885 5.63225 5.67960 5.78862 5.84055 5.90921 6.02043 6.13463 6.35702 6.63140 6.79473 7.21081 7.45489 7.54403 7.69009 7.75246 8.14768 8.24287 9.12944 9.73213 10.35293 11.31331 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.018827 B = 0.003296 C = 0.003096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.903801 B = 8494.184488 C = 9042.934104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.380 6.380 3 C 0.054 3.946 4 H 0.067 0.933 5 C 0.142 3.858 6 N -0.600 5.600 7 C -0.224 4.224 8 H 0.081 0.919 9 C -0.009 4.009 10 N -0.923 5.923 11 Si 0.918 3.082 12 H -0.288 1.288 13 H -0.290 1.290 14 H -0.281 1.281 15 C 0.130 3.870 16 C 0.135 3.865 17 H 0.107 0.893 18 N -0.709 5.709 19 C 0.590 3.410 20 O -0.521 6.521 21 C -0.250 4.250 22 C -0.040 4.040 23 C -0.180 4.180 24 C -0.027 4.027 25 F -0.100 7.100 26 S 0.225 5.775 27 H 0.079 0.921 28 H 0.033 0.967 29 H 0.047 0.953 30 H 0.114 0.886 31 H 0.028 0.972 32 H 0.254 0.746 33 H 0.031 0.969 34 H 0.036 0.964 35 H 0.394 0.606 36 H 0.166 0.834 37 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.753 -3.437 19.252 19.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.298 6.298 3 C -0.006 4.006 4 H 0.085 0.915 5 C 0.017 3.983 6 N -0.328 5.328 7 C -0.352 4.352 8 H 0.099 0.901 9 C -0.205 4.205 10 N -0.571 5.571 11 Si 0.748 3.252 12 H -0.215 1.215 13 H -0.216 1.216 14 H -0.206 1.206 15 C 0.003 3.997 16 C 0.031 3.969 17 H 0.124 0.876 18 N -0.359 5.359 19 C 0.375 3.625 20 O -0.398 6.398 21 C -0.372 4.372 22 C -0.072 4.072 23 C -0.213 4.213 24 C -0.164 4.164 25 F -0.079 7.079 26 S 0.489 5.511 27 H 0.098 0.902 28 H 0.052 0.948 29 H 0.065 0.935 30 H 0.131 0.869 31 H 0.046 0.954 32 H 0.064 0.936 33 H 0.048 0.952 34 H 0.054 0.946 35 H 0.228 0.772 36 H 0.183 0.817 37 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -3.361 -3.270 18.241 18.834 hybrid contribution 0.843 0.560 0.549 1.152 sum -2.518 -2.710 18.790 19.151 Atomic orbital electron populations 1.22722 0.81543 1.02033 0.99946 1.87853 1.19256 1.27586 1.95067 1.24085 0.92470 0.83852 1.00172 0.91468 1.22338 0.94622 0.92122 0.89260 1.44295 1.37092 1.35706 1.15699 1.19094 1.13803 1.06279 0.95976 0.90147 1.24801 0.98462 0.99378 0.97858 1.69740 1.24424 1.38837 1.24107 0.86027 0.77346 0.80882 0.80965 1.21498 1.21622 1.20630 1.21608 0.95935 0.93932 0.88219 1.22274 0.97165 1.00556 0.76929 0.87550 1.45913 1.21821 1.60577 1.07615 1.16751 0.83553 0.78872 0.83288 1.90869 1.28477 1.42383 1.78115 1.24656 1.00914 1.13282 0.98299 1.20505 1.00023 0.97251 0.89395 1.20300 0.96487 1.04212 1.00259 1.21953 0.98224 1.07980 0.88288 1.91536 1.82828 1.88243 1.45312 1.83474 1.19306 1.54716 0.93610 0.90222 0.94796 0.93463 0.86879 0.95445 0.93566 0.95155 0.94612 0.77206 0.81706 0.82433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 10.85 101.05 1.10 1.57 16 2 O -0.38 -6.75 10.52 -35.23 -0.37 -7.12 16 3 C 0.05 1.00 3.17 -24.46 -0.08 0.93 16 4 H 0.07 1.16 7.69 -51.93 -0.40 0.76 16 5 C 0.14 3.39 5.63 -2.41 -0.01 3.38 16 6 N -0.60 -15.15 3.40 -169.94 -0.58 -15.72 16 7 C -0.22 -6.12 10.27 -15.06 -0.15 -6.27 16 8 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 9 C -0.01 -0.26 5.49 -17.43 -0.10 -0.36 16 10 N -0.92 -26.16 10.09 55.49 0.56 -25.60 16 11 Si 0.92 21.66 29.55 -169.99 -5.02 16.64 16 12 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 13 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 14 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 15 C 0.13 2.77 7.00 -3.07 -0.02 2.75 16 16 C 0.14 2.49 3.00 -66.09 -0.20 2.29 16 17 H 0.11 2.14 7.62 -51.93 -0.40 1.75 16 18 N -0.71 -10.62 5.11 -53.43 -0.27 -10.89 16 19 C 0.59 9.00 7.77 -13.00 -0.10 8.89 16 20 O -0.52 -9.72 16.52 5.16 0.09 -9.63 16 21 C -0.25 -2.96 6.44 -36.87 -0.24 -3.20 16 22 C -0.04 -0.41 10.00 -40.45 -0.40 -0.81 16 23 C -0.18 -1.58 10.16 -41.33 -0.42 -2.00 16 24 C -0.03 -0.25 8.10 29.31 0.24 -0.02 16 25 F -0.10 -0.99 17.32 2.25 0.04 -0.95 16 26 S 0.22 2.09 22.14 -107.50 -2.38 -0.29 16 27 H 0.08 0.92 8.14 -51.92 -0.42 0.50 16 28 H 0.03 0.40 8.12 -51.93 -0.42 -0.03 16 29 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.11 2.97 5.87 -51.93 -0.30 2.66 16 31 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 33 H 0.03 0.63 8.03 -51.93 -0.42 0.21 16 34 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.39 4.90 7.64 -40.82 -0.31 4.59 16 36 H 0.17 1.55 8.06 -52.49 -0.42 1.13 16 37 H 0.16 1.02 8.06 -52.49 -0.42 0.59 16 LS Contribution 333.67 15.07 5.03 5.03 Total: -1.00 -31.26 333.67 -7.64 -38.90 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: -4.33 Total: 2.48 kcal Atomic # 6 Polarization: 7.55 SS G_CDS: -0.39 Total: 7.16 kcal Atomic # 7 Polarization: -51.92 SS G_CDS: -0.29 Total: -52.21 kcal Atomic # 8 Polarization: -16.47 SS G_CDS: -0.29 Total: -16.76 kcal Atomic # 9 Polarization: -0.99 SS G_CDS: 0.04 Total: -0.95 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Atomic # 16 Polarization: 2.09 SS G_CDS: -2.38 Total: -0.29 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -31.26 -7.64 -38.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082394212.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.777 kcal (2) G-P(sol) polarization free energy of solvation -31.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds