Wall clock time and date at job start Tue Mar 31 2020 10:38:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42901 * 113.99838 * 2 1 4 4 H 1.09003 * 110.91418 * 26.09854 * 3 2 1 5 5 C 1.55124 * 111.16371 * 262.16725 * 3 2 1 6 6 N 1.47428 * 104.94370 * 205.12941 * 5 3 2 7 7 C 1.36931 * 125.64659 * 203.97014 * 6 5 3 8 8 H 1.07997 * 119.99908 * 180.02562 * 7 6 5 9 9 C 1.38810 * 120.00209 * 0.03903 * 7 6 5 10 10 N 1.31612 * 120.00116 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 119.99973 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47071 * 90.00236 * 11 9 7 13 13 H 1.48501 * 109.47069 * 210.00232 * 11 9 7 14 14 H 1.48503 * 109.47117 * 330.00137 * 11 9 7 15 15 C 1.47019 * 108.70257 * 24.00118 * 6 5 3 16 16 C 1.54322 * 107.27316 * 358.94487 * 15 6 5 17 17 H 1.09000 * 110.72720 * 96.34153 * 16 15 6 18 18 N 1.46507 * 110.72338 * 219.44392 * 16 15 6 19 19 C 1.34778 * 119.99364 * 271.15938 * 18 16 15 20 20 O 1.21733 * 120.00585 * 359.97438 * 19 18 16 21 21 C 1.46342 * 119.99575 * 179.97438 * 19 18 16 22 22 C 1.36733 * 125.43728 * 179.97438 * 21 19 18 23 23 C 1.37342 * 113.33440 * 179.97438 * 22 21 19 24 24 C 1.34214 * 115.04458 * 359.97438 * 23 22 21 25 25 F 1.35098 * 124.54112 * 179.73371 * 24 23 22 26 26 S 1.70610 * 110.91583 * 0.02562 * 24 23 22 27 27 H 1.09009 * 109.46487 * 179.97438 * 1 2 3 28 28 H 1.08991 * 109.47459 * 300.00142 * 1 2 3 29 29 H 1.09005 * 109.46781 * 60.00557 * 1 2 3 30 30 H 1.09001 * 110.41706 * 86.20150 * 5 3 2 31 31 H 1.08994 * 110.20375 * 323.95372 * 5 3 2 32 32 H 0.97001 * 120.00420 * 179.97438 * 10 9 7 33 33 H 1.08997 * 109.88702 * 239.52068 * 15 6 5 34 34 H 1.09005 * 109.88415 * 118.35689 * 15 6 5 35 35 H 0.96995 * 120.00407 * 91.14921 * 18 16 15 36 36 H 1.08000 * 123.33600 * 359.97438 * 22 21 19 37 37 H 1.07996 * 122.48062 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3331 2.0328 0.4479 5 6 2.4181 1.7369 -1.4331 6 7 3.4966 2.7234 -1.2407 7 6 3.8524 3.7008 -2.1313 8 1 4.6607 4.3773 -1.8961 9 6 3.1740 3.8223 -3.3362 10 7 2.1884 2.9983 -3.6224 11 14 3.6598 5.1552 -4.5514 12 1 4.6978 4.6294 -5.4740 13 1 2.4675 5.5709 -5.3329 14 1 4.2003 6.3249 -3.8132 15 6 4.1274 2.4835 0.0655 16 6 3.3824 1.3035 0.7243 17 1 3.9105 0.3666 0.5471 18 7 3.2106 1.5358 2.1606 19 6 4.1626 1.1353 3.0265 20 8 5.1649 0.5801 2.6153 21 6 3.9913 1.3678 4.4611 22 6 4.8821 1.0089 5.4344 23 6 4.4709 1.3482 6.7001 24 6 3.2813 1.9662 6.7645 25 9 2.6931 2.3783 7.9088 26 16 2.6077 2.1544 5.2084 27 1 -0.3632 -1.0278 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.5729 2.1944 -1.9475 31 1 2.7853 0.8780 -1.9947 32 1 1.7140 3.0834 -4.4642 33 1 4.0383 3.3729 0.6892 34 1 5.1782 2.2282 -0.0716 35 1 2.4119 1.9780 2.4883 36 1 5.8166 0.5082 5.2282 37 1 5.0612 1.1335 7.5787 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001082394212.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:38:37 Heat of formation + Delta-G solvation = -71.136814 kcal Electronic energy + Delta-G solvation = -23590.639300 eV Core-core repulsion = 19795.982454 eV Total energy + Delta-G solvation = -3794.656846 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.089 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -50.19858 -41.23648 -39.77148 -38.42589 -37.51374 -35.71599 -33.76321 -31.16207 -30.22450 -28.76206 -27.50870 -26.46150 -25.60519 -23.18339 -22.39418 -21.68976 -20.90082 -20.14239 -19.05036 -18.13059 -17.90079 -17.30731 -17.14435 -17.09476 -16.38751 -16.13392 -15.87040 -15.77360 -15.56428 -15.41118 -15.04985 -14.71523 -14.23105 -13.94730 -13.77123 -13.47345 -13.20089 -13.15360 -13.01237 -12.73406 -12.54995 -12.35778 -12.13180 -12.04315 -11.90119 -11.60511 -11.36234 -10.79702 -10.63942 -10.27324 -9.82937 -9.82574 -8.97058 -7.80355 -5.27557 -0.81266 -0.12716 0.47927 1.11544 1.48585 1.50621 1.59122 1.85958 2.01701 2.45437 2.72973 3.19115 3.30840 3.50123 3.62362 3.84415 3.93319 4.03677 4.13012 4.26068 4.34281 4.44588 4.60137 4.66512 4.73011 4.81581 4.84828 4.89019 4.94472 5.11927 5.25583 5.35292 5.45521 5.68744 6.18860 6.28968 6.30992 6.97545 7.05254 7.69450 8.31661 9.21119 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.018827 B = 0.003296 C = 0.003096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.903801 B = 8494.184488 C = 9042.934104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.395 6.395 3 C 0.076 3.924 4 H 0.091 0.909 5 C 0.147 3.853 6 N -0.618 5.618 7 C -0.244 4.244 8 H 0.083 0.917 9 C -0.060 4.060 10 N -0.947 5.947 11 Si 0.984 3.016 12 H -0.289 1.289 13 H -0.290 1.290 14 H -0.268 1.268 15 C 0.131 3.869 16 C 0.152 3.848 17 H 0.087 0.913 18 N -0.700 5.700 19 C 0.593 3.407 20 O -0.563 6.563 21 C -0.283 4.283 22 C -0.028 4.028 23 C -0.176 4.176 24 C -0.028 4.028 25 F -0.100 7.100 26 S 0.266 5.734 27 H 0.104 0.896 28 H 0.061 0.939 29 H 0.037 0.963 30 H 0.089 0.911 31 H -0.010 1.010 32 H 0.250 0.750 33 H 0.042 0.958 34 H 0.020 0.980 35 H 0.409 0.591 36 H 0.169 0.831 37 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.463 -2.775 21.553 22.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.313 6.313 3 C 0.016 3.984 4 H 0.108 0.892 5 C 0.021 3.979 6 N -0.346 5.346 7 C -0.372 4.372 8 H 0.101 0.899 9 C -0.253 4.253 10 N -0.596 5.596 11 Si 0.811 3.189 12 H -0.216 1.216 13 H -0.216 1.216 14 H -0.193 1.193 15 C 0.004 3.996 16 C 0.046 3.954 17 H 0.105 0.895 18 N -0.351 5.351 19 C 0.380 3.620 20 O -0.443 6.443 21 C -0.404 4.404 22 C -0.061 4.061 23 C -0.208 4.208 24 C -0.166 4.166 25 F -0.079 7.079 26 S 0.531 5.469 27 H 0.122 0.878 28 H 0.080 0.920 29 H 0.055 0.945 30 H 0.107 0.893 31 H 0.008 0.992 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.038 0.962 35 H 0.246 0.754 36 H 0.187 0.813 37 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -4.104 -2.598 20.588 21.153 hybrid contribution 1.048 0.317 -0.085 1.098 sum -3.057 -2.280 20.502 20.854 Atomic orbital electron populations 1.23012 0.79203 1.04014 1.00804 1.87844 1.21821 1.26688 1.94944 1.23659 0.93055 0.85009 0.96627 0.89167 1.22092 0.93261 0.90348 0.92210 1.44534 1.37886 1.35449 1.16730 1.19452 1.14009 1.06898 0.96869 0.89896 1.25634 0.98604 1.01571 0.99515 1.69977 1.25202 1.40180 1.24197 0.85009 0.76747 0.78606 0.78508 1.21646 1.21594 1.19276 1.21677 0.95270 0.95511 0.87118 1.21759 0.96341 0.98360 0.78906 0.89498 1.45664 1.22658 1.60839 1.05959 1.17135 0.82586 0.77660 0.84583 1.90845 1.30055 1.44219 1.79214 1.24311 1.03385 1.16187 0.96538 1.20688 0.99775 0.96066 0.89619 1.20472 0.96420 1.03465 1.00447 1.22132 0.98467 1.07625 0.88387 1.91545 1.82839 1.88201 1.45333 1.83293 1.17294 1.53457 0.92865 0.87805 0.92008 0.94462 0.89346 0.99183 0.94022 0.93965 0.96157 0.75440 0.81314 0.79887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.65 10.85 113.37 1.23 1.88 16 2 O -0.39 -13.78 10.52 -148.98 -1.57 -15.35 16 3 C 0.08 2.84 3.17 32.06 0.10 2.94 16 4 H 0.09 2.95 7.69 -2.39 -0.02 2.93 16 5 C 0.15 7.25 5.63 86.93 0.49 7.74 16 6 N -0.62 -32.03 3.40 -691.57 -2.35 -34.38 16 7 C -0.24 -13.60 10.27 84.03 0.86 -12.73 16 8 H 0.08 4.45 7.83 -2.91 -0.02 4.42 16 9 C -0.06 -3.36 5.49 84.86 0.47 -2.90 16 10 N -0.95 -55.09 10.09 21.65 0.22 -54.88 16 11 Si 0.98 44.90 29.55 68.60 2.03 46.93 16 12 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 13 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 14 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 15 C 0.13 5.67 7.00 86.73 0.61 6.28 16 16 C 0.15 5.65 3.00 46.18 0.14 5.79 16 17 H 0.09 3.61 7.62 -2.39 -0.02 3.59 16 18 N -0.70 -20.25 5.11 -441.16 -2.26 -22.51 16 19 C 0.59 17.67 7.77 86.35 0.67 18.34 16 20 O -0.56 -21.22 16.52 -4.45 -0.07 -21.30 16 21 C -0.28 -6.21 6.44 24.03 0.15 -6.05 16 22 C -0.03 -0.52 10.00 21.71 0.22 -0.31 16 23 C -0.18 -2.56 10.16 21.14 0.21 -2.34 16 24 C -0.03 -0.45 8.10 66.90 0.54 0.10 16 25 F -0.10 -1.67 17.32 44.97 0.78 -0.89 16 26 S 0.27 4.23 22.14 -56.49 -1.25 2.98 16 27 H 0.10 2.16 8.14 -2.38 -0.02 2.14 16 28 H 0.06 1.25 8.12 -2.39 -0.02 1.23 16 29 H 0.04 1.03 8.14 -2.38 -0.02 1.01 16 30 H 0.09 4.82 5.87 -2.39 -0.01 4.80 16 31 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 32 H 0.25 14.09 8.31 -92.71 -0.77 13.32 16 33 H 0.04 1.73 8.03 -2.39 -0.02 1.71 16 34 H 0.02 0.94 8.14 -2.38 -0.02 0.92 16 35 H 0.41 9.31 7.64 -92.71 -0.71 8.60 16 36 H 0.17 2.92 8.06 -2.91 -0.02 2.90 16 37 H 0.18 1.68 8.06 -2.91 -0.02 1.66 16 Total: -1.00 -69.41 333.67 1.63 -67.78 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: 0.41 Total: 12.89 kcal Atomic # 6 Polarization: 13.03 SS G_CDS: 5.70 Total: 18.73 kcal Atomic # 7 Polarization: -107.38 SS G_CDS: -4.39 Total: -111.77 kcal Atomic # 8 Polarization: -35.00 SS G_CDS: -1.64 Total: -36.65 kcal Atomic # 9 Polarization: -1.67 SS G_CDS: 0.78 Total: -0.89 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Atomic # 16 Polarization: 4.23 SS G_CDS: -1.25 Total: 2.98 kcal Total: -69.41 1.63 -67.78 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082394212.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.352 kcal (2) G-P(sol) polarization free energy of solvation -69.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds