Wall clock time and date at job start Tue Mar 31 2020 11:08:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30744 * 1 3 3 Si 1.86795 * 119.99970 * 2 1 4 4 H 1.48501 * 109.47219 * 270.00232 * 3 2 1 5 5 H 1.48504 * 109.47290 * 29.99600 * 3 2 1 6 6 H 1.48501 * 109.47158 * 149.99936 * 3 2 1 7 7 C 1.40019 * 119.99919 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00154 * 179.97438 * 7 2 1 9 9 C 1.41317 * 120.00447 * 0.02562 * 7 2 1 10 10 C 1.40591 * 119.78926 * 179.97438 * 9 7 2 11 11 C 1.38338 * 119.14898 * 180.02562 * 10 9 7 12 12 C 1.38647 * 118.68201 * 359.97438 * 11 10 9 13 13 C 1.39755 * 119.49014 * 359.97438 * 12 11 10 14 14 N 1.38828 * 119.58142 * 179.97438 * 13 12 11 15 15 C 1.46497 * 120.00015 * 0.02562 * 14 13 12 16 16 H 1.08997 * 110.26992 * 32.92337 * 15 14 13 17 17 C 1.54347 * 110.29850 * 154.99580 * 15 14 13 18 18 C 1.54348 * 102.39267 * 145.37524 * 17 15 14 19 19 C 1.51368 * 105.17097 * 333.64476 * 18 17 15 20 20 C 1.38246 * 109.75766 * 17.19407 * 19 18 17 21 21 C 1.38458 * 119.85880 * 179.97438 * 20 19 18 22 22 C 1.38151 * 120.24203 * 0.02562 * 21 20 19 23 23 C 1.38196 * 119.95293 * 359.97438 * 22 21 20 24 24 C 1.38268 * 119.91515 * 359.97438 * 23 22 21 25 25 Cl 1.73601 * 119.90189 * 180.02562 * 24 23 22 26 26 N 1.31978 * 120.83065 * 0.26357 * 13 12 11 27 27 H 0.96996 * 120.00276 * 0.02562 * 1 2 3 28 28 H 1.07997 * 120.42498 * 359.97438 * 10 9 7 29 29 H 1.08001 * 120.66113 * 180.02562 * 11 10 9 30 30 H 1.08001 * 120.25246 * 179.97438 * 12 11 10 31 31 H 0.97001 * 119.99673 * 180.02562 * 14 13 12 32 32 H 1.08999 * 110.82422 * 263.59874 * 17 15 14 33 33 H 1.08999 * 110.82732 * 27.15153 * 17 15 14 34 34 H 1.09002 * 110.30780 * 92.57295 * 18 17 15 35 35 H 1.09007 * 110.30427 * 214.72544 * 18 17 15 36 36 H 1.07995 * 119.87786 * 180.02562 * 21 20 19 37 37 H 1.08000 * 120.02308 * 180.02562 * 22 21 20 38 38 H 1.07991 * 120.04190 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.4889 2.0464 -1.4001 5 1 1.4388 2.6527 0.7000 6 1 3.5390 1.4401 0.7001 7 6 2.0075 -1.2126 0.0005 8 1 3.0876 -1.2127 0.0001 9 6 1.3010 -2.4365 0.0005 10 6 2.0085 -3.6514 0.0005 11 6 1.3036 -4.8417 0.0000 12 6 -0.0821 -4.7944 0.0000 13 6 -0.7282 -3.5552 0.0011 14 7 -2.1156 -3.5056 0.0006 15 6 -2.8929 -4.7473 -0.0005 16 1 -2.3660 -5.5232 0.5549 17 6 -4.2893 -4.5055 0.6110 18 6 -5.1822 -5.4540 -0.2169 19 6 -4.4711 -5.6098 -1.5440 20 6 -3.1554 -5.2037 -1.4197 21 6 -2.3103 -5.2598 -2.5150 22 6 -2.7772 -5.7194 -3.7313 23 6 -4.0921 -6.1255 -3.8568 24 6 -4.9378 -6.0715 -2.7642 25 17 -6.5894 -6.5825 -2.9221 26 7 -0.0360 -2.4315 -0.0031 27 1 -0.4850 0.8400 -0.0004 28 1 3.0885 -3.6554 0.0001 29 1 1.8222 -5.7890 0.0004 30 1 -0.6577 -5.7082 -0.0008 31 1 -2.5702 -2.6487 0.0010 32 1 -4.3037 -4.7817 1.6653 33 1 -4.5968 -3.4684 0.4768 34 1 -5.2711 -6.4199 0.2803 35 1 -6.1676 -5.0122 -0.3655 36 1 -1.2824 -4.9430 -2.4182 37 1 -2.1148 -5.7620 -4.5833 38 1 -4.4585 -6.4854 -4.8068 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116636485.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:03 Heat of formation + Delta-G solvation = 55.838180 kcal Electronic energy + Delta-G solvation = -22873.355460 eV Core-core repulsion = 19512.930182 eV Total energy + Delta-G solvation = -3360.425279 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 314.088 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.28839 -38.18571 -36.73415 -35.92418 -34.06213 -32.97792 -30.81412 -30.16165 -29.23255 -28.54761 -25.96075 -25.36835 -22.68543 -21.71390 -21.29646 -20.78317 -19.97315 -17.42990 -16.90232 -16.09132 -15.78885 -15.27309 -15.14308 -14.74617 -14.54451 -13.95169 -13.78202 -13.39463 -13.26100 -13.09389 -12.80823 -12.32208 -11.96663 -11.89716 -11.68614 -11.48142 -11.46080 -11.23143 -11.06911 -11.01163 -10.92686 -10.83238 -10.57159 -10.42383 -9.94136 -9.55081 -8.95158 -8.60278 -8.56117 -7.94695 -7.53080 -6.56865 -6.34702 -4.49389 1.25928 1.29632 2.13657 2.85616 3.10370 3.13373 3.21095 3.27589 3.65281 3.97117 4.17443 4.36354 4.60210 4.83249 4.92790 5.09057 5.17170 5.21565 5.41703 5.54282 5.66442 5.74269 5.85688 5.94821 5.98890 6.05484 6.10764 6.14353 6.26185 6.49931 6.57368 6.66824 6.82370 6.87469 6.89669 6.92149 7.22924 7.56981 7.78360 7.89737 8.14226 8.33296 8.64647 8.78011 9.09361 10.22273 10.38141 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.020546 B = 0.003332 C = 0.003245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.466798 B = 8400.236019 C = 8626.477199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.715 5.715 2 C 0.072 3.928 3 Si 0.904 3.096 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.262 1.262 7 C -0.434 4.434 8 H 0.083 0.917 9 C 0.293 3.707 10 C -0.316 4.316 11 C -0.031 4.031 12 C -0.369 4.369 13 C 0.412 3.588 14 N -0.727 5.727 15 C 0.202 3.798 16 H 0.096 0.904 17 C -0.124 4.124 18 C -0.076 4.076 19 C -0.091 4.091 20 C -0.088 4.088 21 C -0.077 4.077 22 C -0.113 4.113 23 C -0.114 4.114 24 C -0.027 4.027 25 Cl -0.084 7.084 26 N -0.530 5.530 27 H 0.270 0.730 28 H 0.094 0.906 29 H 0.092 0.908 30 H 0.090 0.910 31 H 0.397 0.603 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.134 0.866 37 H 0.131 0.869 38 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.630 -9.025 -3.259 14.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.336 5.336 2 C -0.154 4.154 3 Si 0.729 3.271 4 H -0.195 1.195 5 H -0.202 1.202 6 H -0.186 1.186 7 C -0.466 4.466 8 H 0.101 0.899 9 C 0.166 3.834 10 C -0.339 4.339 11 C -0.056 4.056 12 C -0.395 4.395 13 C 0.172 3.828 14 N -0.362 5.362 15 C 0.095 3.905 16 H 0.114 0.886 17 C -0.162 4.162 18 C -0.113 4.113 19 C -0.092 4.092 20 C -0.090 4.090 21 C -0.095 4.095 22 C -0.131 4.131 23 C -0.133 4.133 24 C -0.054 4.054 25 Cl -0.056 7.056 26 N -0.252 5.252 27 H 0.081 0.919 28 H 0.112 0.888 29 H 0.110 0.890 30 H 0.108 0.892 31 H 0.233 0.767 32 H 0.103 0.897 33 H 0.099 0.901 34 H 0.103 0.897 35 H 0.097 0.903 36 H 0.152 0.848 37 H 0.149 0.851 38 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -11.380 -8.302 -3.247 14.456 hybrid contribution 0.562 0.106 -0.233 0.618 sum -10.818 -8.196 -3.480 14.011 Atomic orbital electron populations 1.70142 1.07123 1.27363 1.28992 1.26038 0.94856 1.00895 0.93566 0.86387 0.80525 0.81077 0.79145 1.19511 1.20242 1.18601 1.19591 0.94165 0.89419 1.43383 0.89922 1.18193 0.86886 0.91816 0.86530 1.21535 0.98419 0.93483 1.20449 1.20592 0.93458 0.96330 0.95191 1.20608 0.94536 0.95428 1.28900 1.18522 0.84221 0.90257 0.89803 1.44201 1.02725 1.06019 1.83283 1.20209 0.91650 0.88552 0.90117 0.88604 1.22601 0.93387 1.00465 0.99758 1.21005 0.98794 1.00335 0.91213 1.20334 0.95582 0.99470 0.93853 1.21236 0.92714 0.97810 0.97268 1.20986 1.00793 0.96380 0.91358 1.21055 0.94882 0.99311 0.97894 1.20898 0.93493 1.01479 0.97438 1.20420 0.85649 1.04712 0.94603 1.98339 1.19436 1.89678 1.98120 1.68220 1.07656 1.24327 1.24955 0.91930 0.88773 0.89012 0.89177 0.76730 0.89707 0.90096 0.89746 0.90299 0.84815 0.85135 0.85209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -18.73 11.46 55.55 0.64 -18.09 16 2 C 0.07 1.81 5.50 -17.35 -0.10 1.72 16 3 Si 0.90 18.56 29.56 -169.99 -5.02 13.54 16 4 H -0.27 -5.49 7.11 56.52 0.40 -5.08 16 5 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 6 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 7 C -0.43 -11.59 9.14 -37.74 -0.34 -11.94 16 8 H 0.08 2.08 7.85 -52.48 -0.41 1.67 16 9 C 0.29 7.98 6.55 -85.00 -0.56 7.42 16 10 C -0.32 -7.82 9.83 -38.66 -0.38 -8.20 16 11 C -0.03 -0.70 10.15 -39.39 -0.40 -1.10 16 12 C -0.37 -8.10 8.41 -38.86 -0.33 -8.42 16 13 C 0.41 9.58 7.45 -155.31 -1.16 8.42 16 14 N -0.73 -13.91 5.26 -54.03 -0.28 -14.20 16 15 C 0.20 3.08 2.88 -68.05 -0.20 2.89 16 16 H 0.10 1.50 6.37 -51.93 -0.33 1.17 16 17 C -0.12 -1.47 6.76 -25.32 -0.17 -1.65 16 18 C -0.08 -0.84 6.47 -26.85 -0.17 -1.01 16 19 C -0.09 -1.22 6.05 -104.17 -0.63 -1.85 16 20 C -0.09 -1.33 5.79 -104.21 -0.60 -1.94 16 21 C -0.08 -1.21 9.99 -39.53 -0.39 -1.60 16 22 C -0.11 -1.50 10.04 -39.63 -0.40 -1.90 16 23 C -0.11 -1.41 9.83 -39.59 -0.39 -1.80 16 24 C -0.03 -0.35 6.32 -39.45 -0.25 -0.60 16 25 Cl -0.08 -0.96 28.71 -51.86 -1.49 -2.45 16 26 N -0.53 -14.23 7.89 -10.33 -0.08 -14.31 16 27 H 0.27 6.44 8.29 -40.82 -0.34 6.10 16 28 H 0.09 2.18 8.06 -52.49 -0.42 1.76 16 29 H 0.09 1.78 8.06 -52.49 -0.42 1.35 16 30 H 0.09 1.78 6.18 -52.49 -0.32 1.46 16 31 H 0.40 7.72 8.54 -40.82 -0.35 7.37 16 32 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.08 0.97 7.82 -51.93 -0.41 0.56 16 34 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.13 2.40 7.00 -52.49 -0.37 2.03 16 37 H 0.13 1.45 8.06 -52.49 -0.42 1.03 16 38 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 LS Contribution 334.06 15.07 5.03 5.03 Total: -1.00 -28.64 334.06 -11.96 -40.60 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: -4.28 Total: 11.46 kcal Atomic # 6 Polarization: -15.11 SS G_CDS: -6.47 Total: -21.58 kcal Atomic # 7 Polarization: -46.88 SS G_CDS: 0.27 Total: -46.61 kcal Atomic # 14 Polarization: 18.56 SS G_CDS: -5.02 Total: 13.54 kcal Atomic # 17 Polarization: -0.96 SS G_CDS: -1.49 Total: -2.45 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -28.64 -11.96 -40.60 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116636485.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.440 kcal (2) G-P(sol) polarization free energy of solvation -28.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.602 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds