Wall clock time and date at job start Tue Mar 31 2020 11:08:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30738 * 1 3 3 Si 1.86800 * 120.00098 * 2 1 4 4 H 1.48498 * 109.47266 * 239.99345 * 3 2 1 5 5 H 1.48490 * 109.47418 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47063 * 120.00056 * 3 2 1 7 7 C 1.40034 * 120.00000 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99890 * 179.97438 * 7 2 1 9 9 C 1.41312 * 119.99713 * 0.02562 * 7 2 1 10 10 C 1.40595 * 119.78109 * 179.97438 * 9 7 2 11 11 C 1.38351 * 119.14426 * 179.97438 * 10 9 7 12 12 C 1.38635 * 118.68021 * 0.27837 * 11 10 9 13 13 C 1.39759 * 119.49526 * 359.47075 * 12 11 10 14 14 N 1.38823 * 119.58654 * 180.27872 * 13 12 11 15 15 C 1.46495 * 120.00017 * 0.26010 * 14 13 12 16 16 H 1.09006 * 110.26971 * 325.69580 * 15 14 13 17 17 C 1.54345 * 110.30284 * 203.62535 * 15 14 13 18 18 C 1.54601 * 102.27488 * 267.39333 * 17 15 14 19 19 C 1.51366 * 105.18704 * 333.63844 * 18 17 15 20 20 C 1.38236 * 109.75991 * 17.20551 * 19 18 17 21 21 C 1.38463 * 119.85572 * 179.97438 * 20 19 18 22 22 C 1.38156 * 120.24274 * 0.02562 * 21 20 19 23 23 C 1.38183 * 119.95124 * 359.97438 * 22 21 20 24 24 C 1.38263 * 119.92098 * 0.02562 * 23 22 21 25 25 Cl 1.73601 * 119.91025 * 179.97438 * 24 23 22 26 26 N 1.31986 * 120.82521 * 0.54220 * 13 12 11 27 27 H 0.97005 * 119.99878 * 359.97438 * 1 2 3 28 28 H 1.07996 * 120.42621 * 359.97168 * 10 9 7 29 29 H 1.08002 * 120.65533 * 179.97438 * 11 10 9 30 30 H 1.08002 * 120.25227 * 179.70432 * 12 11 10 31 31 H 0.97001 * 119.99781 * 180.25266 * 14 13 12 32 32 H 1.09000 * 110.82326 * 25.64947 * 17 15 14 33 33 H 1.08997 * 110.82285 * 149.19711 * 17 15 14 34 34 H 1.09005 * 110.28406 * 214.71739 * 18 17 15 35 35 H 1.08999 * 110.31023 * 92.57516 * 18 17 15 36 36 H 1.08002 * 119.87917 * 180.02562 * 21 20 19 37 37 H 1.07995 * 120.02074 * 179.97438 * 22 21 20 38 38 H 1.08002 * 120.03816 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.0953 1.6963 -1.2124 5 1 1.2766 2.7464 0.0006 6 1 3.0952 1.6964 1.2126 7 6 2.0076 -1.2127 0.0005 8 1 3.0875 -1.2127 0.0001 9 6 1.3009 -2.4365 0.0005 10 6 2.0085 -3.6514 0.0005 11 6 1.3034 -4.8418 0.0011 12 6 -0.0821 -4.7944 -0.0043 13 6 -0.7283 -3.5551 0.0011 14 7 -2.1156 -3.5055 0.0016 15 6 -2.8930 -4.7472 0.0022 16 1 -2.3776 -5.5157 -0.5741 17 6 -4.3015 -4.4975 -0.5774 18 6 -5.1292 -4.1893 0.6914 19 6 -4.4094 -4.9008 1.8170 20 6 -3.1244 -5.2214 1.4210 21 6 -2.2777 -5.8805 2.2961 22 6 -2.7127 -6.2192 3.5629 23 6 -3.9971 -5.8992 3.9598 24 6 -4.8446 -5.2410 3.0879 25 17 -6.4583 -4.8397 3.5865 26 7 -0.0360 -2.4314 0.0006 27 1 -0.4850 0.8401 0.0004 28 1 3.0884 -3.6554 0.0001 29 1 1.8221 -5.7891 0.0007 30 1 -0.6578 -5.7082 -0.0088 31 1 -2.5702 -2.6486 0.0017 32 1 -4.2959 -3.6437 -1.2550 33 1 -4.6777 -5.3891 -1.0790 34 1 -6.1423 -4.5774 0.5853 35 1 -5.1523 -3.1153 0.8765 36 1 -1.2735 -6.1309 1.9873 37 1 -2.0495 -6.7336 4.2424 38 1 -4.3385 -6.1629 4.9499 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116636486.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:05 Heat of formation + Delta-G solvation = 56.645535 kcal Electronic energy + Delta-G solvation = -22958.691340 eV Core-core repulsion = 19598.301071 eV Total energy + Delta-G solvation = -3360.390269 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 314.088 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.29796 -38.16311 -36.72591 -35.95130 -33.93945 -32.84539 -30.90489 -30.15355 -29.21648 -28.47746 -26.10251 -25.37626 -22.66709 -21.67612 -21.28175 -20.87080 -19.91698 -17.45097 -16.77747 -16.27999 -15.57088 -15.32421 -15.08297 -14.77472 -14.51178 -13.92701 -13.80292 -13.40110 -13.28398 -13.17218 -12.80341 -12.37684 -11.97711 -11.83067 -11.70333 -11.47594 -11.23874 -11.15064 -11.04967 -11.02304 -10.99175 -10.80138 -10.54751 -10.39634 -9.94929 -9.53086 -8.93923 -8.63945 -8.55145 -7.93405 -7.51782 -6.55889 -6.33432 -4.48337 1.25553 1.30473 2.16335 2.88155 3.10183 3.12715 3.22253 3.29218 3.62631 3.97993 4.24395 4.38706 4.59950 4.84496 4.93323 5.08980 5.12249 5.26790 5.41615 5.50636 5.74189 5.80258 5.87499 5.94072 5.99020 6.06312 6.12213 6.14255 6.25915 6.45117 6.57031 6.66386 6.83489 6.87186 6.89063 6.92675 7.24103 7.57612 7.79217 7.89993 8.14759 8.34264 8.65428 8.79122 9.10475 10.23668 10.39481 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.016658 B = 0.003692 C = 0.003436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.467523 B = 7582.104072 C = 8146.635971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.715 5.715 2 C 0.072 3.928 3 Si 0.904 3.096 4 H -0.265 1.265 5 H -0.278 1.278 6 H -0.265 1.265 7 C -0.435 4.435 8 H 0.082 0.918 9 C 0.293 3.707 10 C -0.316 4.316 11 C -0.032 4.032 12 C -0.368 4.368 13 C 0.413 3.587 14 N -0.723 5.723 15 C 0.202 3.798 16 H 0.089 0.911 17 C -0.126 4.126 18 C -0.080 4.080 19 C -0.083 4.083 20 C -0.089 4.089 21 C -0.082 4.082 22 C -0.114 4.114 23 C -0.113 4.113 24 C -0.028 4.028 25 Cl -0.084 7.084 26 N -0.530 5.530 27 H 0.270 0.730 28 H 0.094 0.906 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.397 0.603 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.077 0.923 35 H 0.085 0.915 36 H 0.133 0.867 37 H 0.131 0.869 38 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.647 -8.813 3.351 14.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.337 5.337 2 C -0.153 4.153 3 Si 0.729 3.271 4 H -0.190 1.190 5 H -0.203 1.203 6 H -0.190 1.190 7 C -0.467 4.467 8 H 0.100 0.900 9 C 0.166 3.834 10 C -0.339 4.339 11 C -0.056 4.056 12 C -0.394 4.394 13 C 0.173 3.827 14 N -0.359 5.359 15 C 0.095 3.905 16 H 0.107 0.893 17 C -0.164 4.164 18 C -0.117 4.117 19 C -0.084 4.084 20 C -0.091 4.091 21 C -0.100 4.100 22 C -0.132 4.132 23 C -0.132 4.132 24 C -0.054 4.054 25 Cl -0.055 7.055 26 N -0.251 5.251 27 H 0.081 0.919 28 H 0.112 0.888 29 H 0.110 0.890 30 H 0.109 0.891 31 H 0.232 0.768 32 H 0.107 0.893 33 H 0.102 0.898 34 H 0.096 0.904 35 H 0.103 0.897 36 H 0.151 0.849 37 H 0.149 0.851 38 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -11.402 -8.005 3.363 14.331 hybrid contribution 0.597 0.234 0.326 0.719 sum -10.805 -7.771 3.689 13.811 Atomic orbital electron populations 1.70134 1.07133 1.27450 1.28963 1.26036 0.94850 1.00872 0.93557 0.86447 0.80131 0.80706 0.79841 1.18994 1.20343 1.19015 1.19559 0.94136 0.89446 1.43517 0.89961 1.18179 0.86877 0.91810 0.86505 1.21535 0.98400 0.93502 1.20448 1.20587 0.93455 0.96321 0.95277 1.20602 0.94498 0.95428 1.28873 1.18508 0.84146 0.90309 0.89702 1.44140 1.02680 1.05873 1.83183 1.20037 0.91884 0.88404 0.90214 0.89322 1.22628 0.93774 1.03083 0.96948 1.21108 0.98761 1.00361 0.91430 1.20387 0.95997 0.98736 0.93286 1.21200 0.92827 0.96827 0.98246 1.20991 0.99868 0.96345 0.92829 1.21020 0.95185 1.00711 0.96330 1.20895 0.93712 0.99413 0.99145 1.20439 0.86747 1.03880 0.94344 1.98340 1.22853 1.92904 1.91389 1.68204 1.07658 1.24346 1.24936 0.91881 0.88785 0.89006 0.89101 0.76803 0.89347 0.89804 0.90399 0.89710 0.84948 0.85138 0.85200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -18.94 11.46 55.55 0.64 -18.30 16 2 C 0.07 1.84 5.50 -17.34 -0.10 1.75 16 3 Si 0.90 18.72 29.56 -169.99 -5.02 13.69 16 4 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 5 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 6 H -0.27 -5.44 7.11 56.52 0.40 -5.03 16 7 C -0.43 -11.73 9.14 -37.74 -0.34 -12.08 16 8 H 0.08 2.08 7.85 -52.49 -0.41 1.67 16 9 C 0.29 8.08 6.55 -85.00 -0.56 7.52 16 10 C -0.32 -7.88 9.83 -38.65 -0.38 -8.26 16 11 C -0.03 -0.72 10.15 -39.39 -0.40 -1.12 16 12 C -0.37 -8.09 8.53 -38.87 -0.33 -8.42 16 13 C 0.41 9.75 7.65 -155.31 -1.19 8.56 16 14 N -0.72 -14.00 5.26 -54.02 -0.28 -14.28 16 15 C 0.20 3.08 2.84 -68.05 -0.19 2.89 16 16 H 0.09 1.37 6.43 -51.93 -0.33 1.03 16 17 C -0.13 -1.49 6.68 -25.19 -0.17 -1.66 16 18 C -0.08 -0.95 6.48 -26.71 -0.17 -1.13 16 19 C -0.08 -1.16 6.05 -104.17 -0.63 -1.79 16 20 C -0.09 -1.34 5.77 -104.21 -0.60 -1.95 16 21 C -0.08 -1.22 9.84 -39.53 -0.39 -1.61 16 22 C -0.11 -1.48 10.04 -39.63 -0.40 -1.87 16 23 C -0.11 -1.42 9.82 -39.59 -0.39 -1.80 16 24 C -0.03 -0.37 6.32 -39.45 -0.25 -0.62 16 25 Cl -0.08 -1.01 28.71 -51.86 -1.49 -2.49 16 26 N -0.53 -14.41 7.89 -10.33 -0.08 -14.49 16 27 H 0.27 6.53 8.29 -40.82 -0.34 6.19 16 28 H 0.09 2.19 8.06 -52.49 -0.42 1.77 16 29 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 30 H 0.09 1.75 5.34 -52.49 -0.28 1.47 16 31 H 0.40 7.79 8.73 -40.82 -0.36 7.43 16 32 H 0.09 1.02 8.06 -51.93 -0.42 0.61 16 33 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.13 2.05 6.61 -52.49 -0.35 1.70 16 37 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 38 H 0.13 1.34 8.06 -52.49 -0.42 0.91 16 LS Contribution 333.34 15.07 5.02 5.02 Total: -1.00 -29.28 333.34 -11.95 -41.23 By element: Atomic # 1 Polarization: 15.45 SS G_CDS: -4.24 Total: 11.21 kcal Atomic # 6 Polarization: -15.11 SS G_CDS: -6.49 Total: -21.59 kcal Atomic # 7 Polarization: -47.34 SS G_CDS: 0.27 Total: -47.07 kcal Atomic # 14 Polarization: 18.72 SS G_CDS: -5.02 Total: 13.69 kcal Atomic # 17 Polarization: -1.01 SS G_CDS: -1.49 Total: -2.49 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -29.28 -11.95 -41.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116636486.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.877 kcal (2) G-P(sol) polarization free energy of solvation -29.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.231 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds