Wall clock time and date at job start Tue Mar 31 2020 11:16:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33401 * 122.54298 * 2 1 4 4 S 1.75886 * 109.60814 * 179.97438 * 3 2 1 5 5 C 1.75879 * 90.97928 * 0.02562 * 4 3 2 6 6 C 1.50700 * 125.20028 * 179.97438 * 5 4 3 7 7 N 1.46901 * 109.46924 * 270.02207 * 6 5 4 8 8 C 1.46948 * 111.00381 * 293.79825 * 7 6 5 9 9 C 1.53052 * 109.36732 * 176.81551 * 8 7 6 10 10 N 1.46958 * 109.36453 * 58.39863 * 9 8 7 11 11 C 1.46904 * 110.99731 * 176.81666 * 10 9 8 12 12 C 1.50710 * 109.46939 * 293.79959 * 11 10 9 13 13 H 1.07995 * 119.99606 * 0.02562 * 12 11 10 14 14 C 1.37873 * 119.99692 * 180.02562 * 12 11 10 15 15 N 1.31512 * 120.00241 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 119.99624 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47380 * 90.00158 * 16 14 12 18 18 H 1.48504 * 109.46807 * 209.99569 * 16 14 12 19 19 H 1.48497 * 109.47172 * 329.99488 * 16 14 12 20 20 C 1.46955 * 110.88145 * 300.68052 * 10 9 8 21 21 C 1.46967 * 110.99688 * 169.99947 * 7 6 5 22 22 C 1.33445 * 109.59917 * 359.72879 * 5 4 3 23 23 Cl 1.73601 * 122.55115 * 180.24185 * 22 5 4 24 24 H 1.09002 * 109.47152 * 90.02307 * 1 2 3 25 25 H 1.09001 * 109.46980 * 330.02407 * 1 2 3 26 26 H 1.09004 * 109.47113 * 210.02388 * 1 2 3 27 27 H 1.07998 * 125.19583 * 0.04442 * 3 2 1 28 28 H 1.08998 * 109.47359 * 30.02687 * 6 5 4 29 29 H 1.09001 * 109.46940 * 150.02355 * 6 5 4 30 30 H 1.09003 * 109.49336 * 296.78190 * 8 7 6 31 31 H 1.08997 * 109.49017 * 56.84590 * 8 7 6 32 32 H 1.09009 * 109.48217 * 298.43567 * 9 8 7 33 33 H 1.08999 * 109.51077 * 178.38308 * 9 8 7 34 34 H 1.08997 * 109.47253 * 53.79566 * 11 10 9 35 35 H 1.09000 * 109.47002 * 173.80323 * 11 10 9 36 36 H 0.96996 * 119.99997 * 179.97438 * 15 14 12 37 37 H 1.08995 * 109.49291 * 299.35590 * 20 10 9 38 38 H 1.08994 * 109.48719 * 179.28407 * 20 10 9 39 39 H 1.09001 * 109.48744 * 303.15825 * 21 7 6 40 40 H 1.08996 * 109.48929 * 63.22435 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2246 1.1246 0.0000 4 16 3.9389 0.7308 0.0007 5 6 3.5745 -0.9898 0.0002 6 6 4.5993 -2.0947 0.0000 7 7 4.9327 -2.4530 -1.3851 8 6 3.7771 -3.0522 -2.0669 9 6 4.1404 -3.3373 -3.5261 10 7 5.3007 -4.2379 -3.5724 11 6 5.6342 -4.5961 -4.9575 12 6 4.5192 -5.4226 -5.5449 13 1 3.6498 -5.6578 -4.9491 14 6 4.6093 -5.8784 -6.8430 15 7 5.6679 -5.5915 -7.5688 16 14 3.2270 -6.9022 -7.5714 17 1 2.2349 -6.0061 -8.2178 18 1 3.7831 -7.8363 -8.5831 19 1 2.5643 -7.6781 -6.4925 20 6 6.4564 -3.6386 -2.8906 21 6 6.0931 -3.3537 -1.4314 22 6 2.2519 -1.1673 0.0055 23 17 1.5208 -2.7418 0.0129 24 1 -0.3633 -0.0004 -1.0277 25 1 -0.3633 0.8902 0.5135 26 1 -0.3633 -0.8898 0.5142 27 1 1.8155 2.1240 0.0007 28 1 5.4987 -1.7563 0.5143 29 1 4.1936 -2.9666 0.5132 30 1 3.5053 -3.9841 -1.5712 31 1 2.9348 -2.3614 -2.0302 32 1 4.3858 -2.4018 -4.0291 33 1 3.2943 -3.8082 -4.0266 34 1 5.7626 -3.6882 -5.5467 35 1 6.5594 -5.1721 -4.9711 36 1 5.7313 -5.9124 -8.4819 37 1 6.7281 -2.7068 -3.3863 38 1 7.2986 -4.3295 -2.9273 39 1 6.9393 -2.8826 -0.9313 40 1 5.8477 -4.2890 -0.9284 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001137291560.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:57 Heat of formation + Delta-G solvation = 36.816073 kcal Electronic energy + Delta-G solvation = -21859.370477 eV Core-core repulsion = 18633.564289 eV Total energy + Delta-G solvation = -3225.806188 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 314.091 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.31973 -38.26134 -36.21531 -35.27540 -32.67785 -31.50518 -30.34307 -28.67670 -27.52195 -26.02797 -24.02886 -23.05814 -21.67009 -21.19003 -19.46863 -18.99502 -17.40780 -16.28722 -16.02461 -15.76935 -14.80521 -14.62202 -14.32655 -14.16960 -14.09101 -13.85465 -13.48427 -13.30342 -12.92933 -12.72730 -12.52924 -12.14005 -11.93932 -11.80157 -11.61227 -11.38441 -11.15765 -11.07033 -10.96869 -10.75380 -10.66468 -10.62668 -10.33864 -10.22060 -9.68073 -9.15020 -8.81303 -8.44657 -8.41434 -8.13419 -7.18868 -6.00053 -4.01227 0.67709 1.17876 1.64671 2.25271 2.48527 3.33492 3.39510 3.44083 4.10630 4.44832 4.47783 4.77219 4.93577 4.99347 5.16545 5.22631 5.34866 5.36022 5.42309 5.48422 5.55197 5.59889 5.71439 5.80893 5.86884 5.98030 6.01371 6.09659 6.12612 6.23258 6.45361 6.63453 6.74466 7.17213 7.19232 7.37696 7.41012 7.83219 8.12329 8.24391 8.58822 9.06421 9.62936 11.10903 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.017579 B = 0.003606 C = 0.003279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.450067 B = 7762.050026 C = 8536.596278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.093 4.093 3 C -0.221 4.221 4 S 0.157 5.843 5 C -0.153 4.153 6 C 0.120 3.880 7 N -0.533 5.533 8 C 0.058 3.942 9 C 0.069 3.931 10 N -0.538 5.538 11 C 0.194 3.806 12 C -0.506 4.506 13 H 0.062 0.938 14 C 0.055 3.945 15 N -0.899 5.899 16 Si 0.896 3.104 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.273 1.273 20 C 0.057 3.943 21 C 0.062 3.938 22 C -0.052 4.052 23 Cl -0.045 7.045 24 H 0.074 0.926 25 H 0.068 0.932 26 H 0.071 0.929 27 H 0.169 0.831 28 H 0.085 0.915 29 H 0.058 0.942 30 H 0.041 0.959 31 H 0.072 0.928 32 H 0.027 0.973 33 H 0.085 0.915 34 H -0.009 1.009 35 H 0.030 0.970 36 H 0.261 0.739 37 H 0.031 0.969 38 H 0.072 0.928 39 H 0.070 0.930 40 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.952 13.349 19.008 23.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.106 4.106 3 C -0.357 4.357 4 S 0.422 5.578 5 C -0.272 4.272 6 C -0.009 4.009 7 N -0.258 5.258 8 C -0.070 4.070 9 C -0.060 4.060 10 N -0.263 5.263 11 C 0.069 3.931 12 C -0.545 4.545 13 H 0.080 0.920 14 C -0.146 4.146 15 N -0.539 5.539 16 Si 0.724 3.276 17 H -0.207 1.207 18 H -0.213 1.213 19 H -0.198 1.198 20 C -0.072 4.072 21 C -0.066 4.066 22 C -0.093 4.093 23 Cl -0.016 7.016 24 H 0.093 0.907 25 H 0.087 0.913 26 H 0.090 0.910 27 H 0.187 0.813 28 H 0.104 0.896 29 H 0.076 0.924 30 H 0.059 0.941 31 H 0.090 0.910 32 H 0.045 0.955 33 H 0.104 0.896 34 H 0.009 0.991 35 H 0.048 0.952 36 H 0.070 0.930 37 H 0.049 0.951 38 H 0.091 0.909 39 H 0.089 0.911 40 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -4.564 14.034 18.820 23.916 hybrid contribution -1.992 -1.413 -0.619 2.519 sum -6.555 12.621 18.201 23.098 Atomic orbital electron populations 1.20565 0.89106 1.03013 1.02903 1.18570 0.97882 0.90508 1.03617 1.25354 0.96440 1.02112 1.11762 1.84324 1.04916 0.97214 1.71322 1.24298 0.96186 0.99026 1.07686 1.20519 0.95470 0.93465 0.91482 1.62237 1.06756 1.44064 1.12749 1.22407 0.91971 0.97233 0.95396 1.21990 0.95795 0.94675 0.93560 1.62292 1.03670 1.39999 1.20369 1.19698 0.97248 0.95001 0.81187 1.21160 1.04356 1.32019 0.96946 0.91954 1.24977 0.95990 0.96527 0.97068 1.69958 1.28277 1.46301 1.09329 0.86522 0.82062 0.80116 0.78880 1.20737 1.21264 1.19795 1.22047 0.94726 0.97669 0.92723 1.22178 0.92214 0.94230 0.97998 1.19645 0.91714 0.87821 1.10071 1.98368 1.82721 1.23610 1.96916 0.90723 0.91319 0.91018 0.81308 0.89627 0.92398 0.94064 0.90962 0.95479 0.89649 0.99093 0.95238 0.92961 0.95123 0.90924 0.91114 0.94073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.81 9.85 36.01 0.35 -0.46 16 2 C -0.09 -0.98 5.80 -106.22 -0.62 -1.60 16 3 C -0.22 -2.07 10.98 29.04 0.32 -1.75 16 4 S 0.16 1.61 23.33 -107.50 -2.51 -0.90 16 5 C -0.15 -1.85 5.44 -35.98 -0.20 -2.04 16 6 C 0.12 1.49 5.20 -4.98 -0.03 1.46 16 7 N -0.53 -8.08 4.70 -235.91 -1.11 -9.19 16 8 C 0.06 0.98 4.30 -3.77 -0.02 0.96 16 9 C 0.07 1.41 5.43 -3.77 -0.02 1.39 16 10 N -0.54 -11.96 4.70 -235.90 -1.11 -13.07 16 11 C 0.19 5.16 4.72 -4.97 -0.02 5.13 16 12 C -0.51 -14.43 8.47 -34.44 -0.29 -14.72 16 13 H 0.06 1.76 7.13 -52.49 -0.37 1.39 16 14 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 15 N -0.90 -27.03 13.29 55.43 0.74 -26.29 16 16 Si 0.90 21.89 29.54 -169.99 -5.02 16.87 16 17 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 18 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 19 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 20 C 0.06 1.06 5.61 -3.77 -0.02 1.04 16 21 C 0.06 0.93 5.61 -3.76 -0.02 0.91 16 22 C -0.05 -0.63 5.28 -41.17 -0.22 -0.85 16 23 Cl -0.04 -0.55 24.63 -51.86 -1.28 -1.83 16 24 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.07 0.45 8.12 -51.93 -0.42 0.02 16 26 H 0.07 0.61 7.35 -51.93 -0.38 0.22 16 27 H 0.17 1.14 8.06 -52.49 -0.42 0.72 16 28 H 0.09 0.91 8.03 -51.93 -0.42 0.50 16 29 H 0.06 0.73 7.47 -51.93 -0.39 0.34 16 30 H 0.04 0.72 7.91 -51.93 -0.41 0.31 16 31 H 0.07 1.18 5.38 -51.93 -0.28 0.90 16 32 H 0.03 0.58 8.14 -51.92 -0.42 0.16 16 33 H 0.09 1.88 6.79 -51.93 -0.35 1.53 16 34 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 35 H 0.03 0.83 8.03 -51.93 -0.42 0.42 16 36 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 37 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.07 1.31 8.07 -51.93 -0.42 0.89 16 39 H 0.07 0.89 8.07 -51.93 -0.42 0.47 16 40 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 343.05 15.07 5.17 5.17 Total: -1.00 -30.54 343.05 -11.94 -42.48 By element: Atomic # 1 Polarization: 1.72 SS G_CDS: -5.95 Total: -4.23 kcal Atomic # 6 Polarization: -8.14 SS G_CDS: -0.87 Total: -9.02 kcal Atomic # 7 Polarization: -47.07 SS G_CDS: -1.48 Total: -48.55 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Atomic # 16 Polarization: 1.61 SS G_CDS: -2.51 Total: -0.90 kcal Atomic # 17 Polarization: -0.55 SS G_CDS: -1.28 Total: -1.83 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -30.54 -11.94 -42.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137291560.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.296 kcal (2) G-P(sol) polarization free energy of solvation -30.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.480 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds