Wall clock time and date at job start Tue Mar 31 2020 11:16:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33401 * 122.54298 * 2 1 4 4 S 1.75886 * 109.60814 * 179.97438 * 3 2 1 5 5 C 1.75879 * 90.97928 * 0.02562 * 4 3 2 6 6 C 1.50700 * 125.20028 * 179.97438 * 5 4 3 7 7 N 1.46901 * 109.46924 * 270.02207 * 6 5 4 8 8 C 1.46948 * 111.00381 * 293.79825 * 7 6 5 9 9 C 1.53052 * 109.36732 * 176.81551 * 8 7 6 10 10 N 1.46958 * 109.36453 * 58.39863 * 9 8 7 11 11 C 1.46904 * 110.99731 * 176.81666 * 10 9 8 12 12 C 1.50710 * 109.46939 * 293.79959 * 11 10 9 13 13 H 1.07995 * 119.99606 * 0.02562 * 12 11 10 14 14 C 1.37873 * 119.99692 * 180.02562 * 12 11 10 15 15 N 1.31512 * 120.00241 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 119.99624 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47380 * 90.00158 * 16 14 12 18 18 H 1.48504 * 109.46807 * 209.99569 * 16 14 12 19 19 H 1.48497 * 109.47172 * 329.99488 * 16 14 12 20 20 C 1.46955 * 110.88145 * 300.68052 * 10 9 8 21 21 C 1.46967 * 110.99688 * 169.99947 * 7 6 5 22 22 C 1.33445 * 109.59917 * 359.72879 * 5 4 3 23 23 Cl 1.73601 * 122.55115 * 180.24185 * 22 5 4 24 24 H 1.09002 * 109.47152 * 90.02307 * 1 2 3 25 25 H 1.09001 * 109.46980 * 330.02407 * 1 2 3 26 26 H 1.09004 * 109.47113 * 210.02388 * 1 2 3 27 27 H 1.07998 * 125.19583 * 0.04442 * 3 2 1 28 28 H 1.08998 * 109.47359 * 30.02687 * 6 5 4 29 29 H 1.09001 * 109.46940 * 150.02355 * 6 5 4 30 30 H 1.09003 * 109.49336 * 296.78190 * 8 7 6 31 31 H 1.08997 * 109.49017 * 56.84590 * 8 7 6 32 32 H 1.09009 * 109.48217 * 298.43567 * 9 8 7 33 33 H 1.08999 * 109.51077 * 178.38308 * 9 8 7 34 34 H 1.08997 * 109.47253 * 53.79566 * 11 10 9 35 35 H 1.09000 * 109.47002 * 173.80323 * 11 10 9 36 36 H 0.96996 * 119.99997 * 179.97438 * 15 14 12 37 37 H 1.08995 * 109.49291 * 299.35590 * 20 10 9 38 38 H 1.08994 * 109.48719 * 179.28407 * 20 10 9 39 39 H 1.09001 * 109.48744 * 303.15825 * 21 7 6 40 40 H 1.08996 * 109.48929 * 63.22435 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2246 1.1246 0.0000 4 16 3.9389 0.7308 0.0007 5 6 3.5745 -0.9898 0.0002 6 6 4.5993 -2.0947 0.0000 7 7 4.9327 -2.4530 -1.3851 8 6 3.7771 -3.0522 -2.0669 9 6 4.1404 -3.3373 -3.5261 10 7 5.3007 -4.2379 -3.5724 11 6 5.6342 -4.5961 -4.9575 12 6 4.5192 -5.4226 -5.5449 13 1 3.6498 -5.6578 -4.9491 14 6 4.6093 -5.8784 -6.8430 15 7 5.6679 -5.5915 -7.5688 16 14 3.2270 -6.9022 -7.5714 17 1 2.2349 -6.0061 -8.2178 18 1 3.7831 -7.8363 -8.5831 19 1 2.5643 -7.6781 -6.4925 20 6 6.4564 -3.6386 -2.8906 21 6 6.0931 -3.3537 -1.4314 22 6 2.2519 -1.1673 0.0055 23 17 1.5208 -2.7418 0.0129 24 1 -0.3633 -0.0004 -1.0277 25 1 -0.3633 0.8902 0.5135 26 1 -0.3633 -0.8898 0.5142 27 1 1.8155 2.1240 0.0007 28 1 5.4987 -1.7563 0.5143 29 1 4.1936 -2.9666 0.5132 30 1 3.5053 -3.9841 -1.5712 31 1 2.9348 -2.3614 -2.0302 32 1 4.3858 -2.4018 -4.0291 33 1 3.2943 -3.8082 -4.0266 34 1 5.7626 -3.6882 -5.5467 35 1 6.5594 -5.1721 -4.9711 36 1 5.7313 -5.9124 -8.4819 37 1 6.7281 -2.7068 -3.3863 38 1 7.2986 -4.3295 -2.9273 39 1 6.9393 -2.8826 -0.9313 40 1 5.8477 -4.2890 -0.9284 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001137291560.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:57 Heat of formation + Delta-G solvation = 17.333512 kcal Electronic energy + Delta-G solvation = -21860.215304 eV Core-core repulsion = 18633.564289 eV Total energy + Delta-G solvation = -3226.651015 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 314.091 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.48141 -39.38892 -37.11043 -36.79970 -34.67722 -32.66962 -31.80116 -30.05598 -28.60681 -27.46209 -25.53354 -24.51252 -23.33026 -22.33645 -20.74905 -20.04220 -18.50750 -18.22920 -17.39487 -16.67983 -16.51611 -16.00531 -15.86534 -15.51902 -15.25541 -15.05833 -14.76097 -14.56592 -14.10420 -13.92649 -13.67771 -13.42553 -13.33334 -12.93918 -12.79050 -12.74680 -12.70905 -12.45952 -12.33250 -12.23133 -12.07316 -11.91944 -11.87052 -11.75097 -11.41708 -11.19490 -10.63039 -9.68362 -9.34821 -9.22524 -9.04010 -8.21747 -6.32080 -0.14760 0.34908 0.88099 1.39649 1.41066 1.43768 1.52833 1.61259 2.39216 2.93723 3.10369 3.28592 3.60083 3.93842 3.96619 4.15982 4.19537 4.33635 4.36044 4.45441 4.50843 4.55007 4.58282 4.65812 4.80222 4.82683 4.85520 4.95799 4.98287 5.01461 5.03739 5.19991 5.26773 5.29208 5.39043 5.62521 5.94214 5.98489 6.04946 6.31803 6.61582 6.83401 7.37669 8.89590 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.017579 B = 0.003606 C = 0.003279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.450067 B = 7762.050026 C = 8536.596278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.112 4.112 3 C -0.210 4.210 4 S 0.173 5.827 5 C -0.178 4.178 6 C 0.124 3.876 7 N -0.540 5.540 8 C 0.078 3.922 9 C 0.072 3.928 10 N -0.544 5.544 11 C 0.209 3.791 12 C -0.524 4.524 13 H 0.060 0.940 14 C 0.003 3.997 15 N -0.934 5.934 16 Si 0.969 3.031 17 H -0.272 1.272 18 H -0.280 1.280 19 H -0.265 1.265 20 C 0.054 3.946 21 C 0.071 3.929 22 C -0.060 4.060 23 Cl -0.056 7.056 24 H 0.073 0.927 25 H 0.089 0.911 26 H 0.066 0.934 27 H 0.198 0.802 28 H 0.108 0.892 29 H 0.057 0.943 30 H 0.036 0.964 31 H 0.079 0.921 32 H 0.012 0.988 33 H 0.064 0.936 34 H -0.041 1.041 35 H 0.006 0.994 36 H 0.265 0.735 37 H 0.022 0.978 38 H 0.075 0.925 39 H 0.106 0.894 40 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.924 14.278 20.479 25.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.125 4.125 3 C -0.345 4.345 4 S 0.438 5.562 5 C -0.297 4.297 6 C -0.005 4.005 7 N -0.265 5.265 8 C -0.050 4.050 9 C -0.057 4.057 10 N -0.269 5.269 11 C 0.083 3.917 12 C -0.563 4.563 13 H 0.079 0.921 14 C -0.195 4.195 15 N -0.574 5.574 16 Si 0.793 3.207 17 H -0.198 1.198 18 H -0.205 1.205 19 H -0.190 1.190 20 C -0.074 4.074 21 C -0.057 4.057 22 C -0.100 4.100 23 Cl -0.027 7.027 24 H 0.092 0.908 25 H 0.108 0.892 26 H 0.085 0.915 27 H 0.215 0.785 28 H 0.126 0.874 29 H 0.075 0.925 30 H 0.054 0.946 31 H 0.097 0.903 32 H 0.031 0.969 33 H 0.082 0.918 34 H -0.023 1.023 35 H 0.024 0.976 36 H 0.074 0.926 37 H 0.040 0.960 38 H 0.094 0.906 39 H 0.124 0.876 40 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -5.532 14.977 20.323 25.844 hybrid contribution -1.645 -1.603 -1.046 2.524 sum -7.178 13.374 19.277 24.535 Atomic orbital electron populations 1.20594 0.87837 1.03881 1.03092 1.18809 0.98988 0.90263 1.04394 1.25740 0.95868 1.03108 1.09826 1.84257 1.05540 0.95654 1.70723 1.24363 0.96159 1.00083 1.09094 1.20542 0.96701 0.93752 0.89493 1.62194 1.05927 1.43534 1.14841 1.22113 0.92917 0.97266 0.92746 1.21938 0.94362 0.93225 0.96147 1.62226 1.05529 1.41465 1.17638 1.19347 0.95885 0.93051 0.83404 1.21436 1.04741 1.32510 0.97567 0.92146 1.25899 0.98596 0.97594 0.97394 1.70083 1.30273 1.47296 1.09795 0.85396 0.78756 0.78445 0.78121 1.19784 1.20505 1.18972 1.22172 0.93550 0.97015 0.94696 1.22127 0.93477 0.94834 0.95262 1.19915 0.92073 0.87876 1.10178 1.98362 1.82904 1.24500 1.96944 0.90818 0.89210 0.91465 0.78535 0.87422 0.92459 0.94618 0.90268 0.96949 0.91779 1.02333 0.97572 0.92624 0.95995 0.90648 0.87591 0.94002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.41 9.85 71.24 0.70 -0.71 16 2 C -0.11 -2.14 5.80 -20.90 -0.12 -2.26 16 3 C -0.21 -3.35 10.98 66.72 0.73 -2.61 16 4 S 0.17 3.12 23.33 -56.49 -1.32 1.80 16 5 C -0.18 -3.97 5.44 24.60 0.13 -3.84 16 6 C 0.12 2.81 5.20 85.56 0.44 3.25 16 7 N -0.54 -15.59 4.70 -900.28 -4.23 -19.82 16 8 C 0.08 2.60 4.30 86.31 0.37 2.98 16 9 C 0.07 3.04 5.43 86.31 0.47 3.51 16 10 N -0.54 -24.82 4.70 -900.26 -4.23 -29.05 16 11 C 0.21 11.65 4.72 85.56 0.40 12.05 16 12 C -0.52 -30.69 8.47 25.60 0.22 -30.47 16 13 H 0.06 3.49 7.13 -2.91 -0.02 3.47 16 14 C 0.00 0.19 5.46 84.65 0.46 0.65 16 15 N -0.93 -57.32 13.29 21.45 0.28 -57.04 16 16 Si 0.97 45.18 29.54 68.60 2.03 47.21 16 17 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 18 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 19 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 20 C 0.05 2.02 5.61 86.31 0.48 2.50 16 21 C 0.07 2.01 5.61 86.31 0.48 2.50 16 22 C -0.06 -1.35 5.28 21.24 0.11 -1.24 16 23 Cl -0.06 -1.33 24.63 -2.72 -0.07 -1.40 16 24 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 25 H 0.09 0.92 8.12 -2.39 -0.02 0.90 16 26 H 0.07 1.05 7.35 -2.38 -0.02 1.03 16 27 H 0.20 1.92 8.06 -2.91 -0.02 1.90 16 28 H 0.11 1.97 8.03 -2.39 -0.02 1.95 16 29 H 0.06 1.33 7.47 -2.39 -0.02 1.31 16 30 H 0.04 1.24 7.91 -2.39 -0.02 1.22 16 31 H 0.08 2.56 5.38 -2.39 -0.01 2.54 16 32 H 0.01 0.55 8.14 -2.38 -0.02 0.53 16 33 H 0.06 2.94 6.79 -2.39 -0.02 2.92 16 34 H -0.04 -2.49 8.12 -2.39 -0.02 -2.51 16 35 H 0.01 0.37 8.03 -2.39 -0.02 0.35 16 36 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 37 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.08 2.73 8.07 -2.39 -0.02 2.71 16 39 H 0.11 2.33 8.07 -2.39 -0.02 2.31 16 40 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -66.97 343.05 -1.61 -68.58 By element: Atomic # 1 Polarization: 2.38 SS G_CDS: 1.03 Total: 3.40 kcal Atomic # 6 Polarization: -18.59 SS G_CDS: 4.89 Total: -13.69 kcal Atomic # 7 Polarization: -97.73 SS G_CDS: -8.18 Total: -105.91 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Atomic # 16 Polarization: 3.12 SS G_CDS: -1.32 Total: 1.80 kcal Atomic # 17 Polarization: -1.33 SS G_CDS: -0.07 Total: -1.40 kcal Total: -66.97 -1.61 -68.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137291560.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.915 kcal (2) G-P(sol) polarization free energy of solvation -66.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.582 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds