Wall clock time and date at job start Tue Mar 31 2020 10:50:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 119.99355 * 2 1 4 4 H 1.48498 * 109.47111 * 269.99715 * 3 2 1 5 5 H 1.48497 * 109.47150 * 29.99838 * 3 2 1 6 6 H 1.48505 * 109.47006 * 150.00086 * 3 2 1 7 7 C 1.37867 * 120.00761 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00834 * 180.02562 * 7 2 1 9 9 C 1.50709 * 119.99835 * 359.97438 * 7 2 1 10 10 C 1.50696 * 109.47123 * 180.02562 * 9 7 2 11 11 O 1.21252 * 120.00193 * 359.97438 * 10 9 7 12 12 N 1.34777 * 119.99735 * 180.02562 * 10 9 7 13 13 C 1.37705 * 119.99980 * 180.02562 * 12 10 9 14 14 N 1.29167 * 119.99931 * 359.97438 * 13 12 10 15 15 C 1.50699 * 120.00336 * 179.97438 * 13 12 10 16 16 C 1.50698 * 109.47498 * 179.97438 * 15 13 12 17 17 C 1.38253 * 120.00351 * 269.73123 * 16 15 13 18 18 C 1.38213 * 120.00244 * 179.78899 * 17 16 15 19 19 C 1.38258 * 119.99927 * 0.45579 * 18 17 16 20 20 C 1.38212 * 119.99641 * 359.77383 * 19 18 17 21 21 C 1.50701 * 119.99784 * 179.97438 * 20 19 18 22 22 F 1.39905 * 109.47052 * 270.02008 * 21 20 19 23 23 F 1.39906 * 109.47245 * 30.02005 * 21 20 19 24 24 F 1.39897 * 109.47289 * 150.01988 * 21 20 19 25 25 C 1.38217 * 119.99545 * 89.99782 * 16 15 13 26 26 H 0.96994 * 120.00722 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.46628 * 60.00576 * 9 7 2 28 28 H 1.09000 * 109.47065 * 300.00534 * 9 7 2 29 29 H 0.96991 * 120.00395 * 359.97438 * 12 10 9 30 30 H 0.97001 * 119.99765 * 179.97438 * 14 13 12 31 31 H 1.09000 * 109.46737 * 300.00030 * 15 13 12 32 32 H 1.09002 * 109.46890 * 59.99919 * 15 13 12 33 33 H 1.08002 * 119.99844 * 359.97438 * 17 16 15 34 34 H 1.08004 * 120.00140 * 180.24904 * 18 17 16 35 35 H 1.07991 * 120.00244 * 179.79033 * 19 18 17 36 36 H 1.07991 * 120.00470 * 359.97438 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4463 2.6527 0.7000 6 1 3.5466 1.4404 0.7000 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 6 2.2306 -3.6444 -0.0005 11 8 3.4227 -3.4228 -0.0010 12 7 1.7814 -4.9152 -0.0011 13 6 2.6763 -5.9618 -0.0005 14 7 3.9462 -5.7256 0.0000 15 6 2.1742 -7.3826 -0.0005 16 6 3.3463 -8.3298 -0.0005 17 6 3.8805 -8.7686 -1.1978 18 6 4.9583 -9.6339 -1.1978 19 6 5.4963 -10.0679 -0.0004 20 6 4.9592 -9.6329 1.1965 21 6 5.5453 -10.1065 2.5016 22 9 4.8973 -11.2787 2.9057 23 9 6.9105 -10.3623 2.3343 24 9 5.3721 -9.1182 3.4765 25 6 3.8838 -8.7640 1.1965 26 1 -0.4851 0.8399 -0.0004 27 1 0.6243 -2.5567 -0.8904 28 1 0.6248 -2.5571 0.8896 29 1 0.8279 -5.0925 -0.0011 30 1 4.5766 -6.4629 0.0007 31 1 1.5683 -7.5538 0.8892 32 1 1.5690 -7.5541 -0.8908 33 1 3.4575 -8.4330 -2.1331 34 1 5.3782 -9.9735 -2.1331 35 1 6.3363 -10.7466 -0.0004 36 1 3.4641 -8.4243 2.1318 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143204868.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:50:45 Heat of formation + Delta-G solvation = -158.969012 kcal Electronic energy + Delta-G solvation = -24932.164508 eV Core-core repulsion = 20579.858586 eV Total energy + Delta-G solvation = -4352.305923 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 314.098 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -51.24949 -48.77518 -48.71373 -41.24605 -40.44805 -37.56302 -35.07293 -34.53055 -33.02318 -32.48330 -30.83163 -28.75411 -27.13329 -26.04986 -23.70048 -23.14133 -21.80085 -21.06778 -19.58460 -19.46060 -19.14272 -18.46542 -17.81479 -17.32564 -17.00161 -16.63298 -16.43434 -16.09032 -15.89542 -15.61783 -15.52844 -15.37666 -15.16972 -14.93827 -14.87729 -14.68484 -14.28457 -14.25078 -14.13595 -13.72447 -13.62297 -13.23092 -12.79949 -12.63109 -12.37890 -12.34366 -12.03458 -11.95409 -11.43595 -10.97310 -10.60605 -10.29623 -10.04743 -9.90061 -9.65327 -8.24336 -6.30409 -0.16101 0.10863 1.26307 1.41207 1.41379 1.54213 1.57633 2.09985 2.29185 2.40286 2.49110 2.63829 2.92770 3.11664 3.33561 3.55514 3.77378 3.82581 3.97140 4.15108 4.19336 4.20324 4.42915 4.60595 4.71033 4.84979 4.87308 5.06897 5.11861 5.22595 5.30276 5.34507 5.67717 5.71766 5.90610 6.08358 6.48346 6.81739 7.34085 7.38973 7.75137 8.87522 Molecular weight = 314.10amu Principal moments of inertia in cm(-1) A = 0.024239 B = 0.002535 C = 0.002450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.868941 B =11043.914992 C =11427.467164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.014 3.986 3 Si 0.959 3.041 4 H -0.272 1.272 5 H -0.273 1.273 6 H -0.278 1.278 7 C -0.537 4.537 8 H 0.051 0.949 9 C 0.011 3.989 10 C 0.505 3.495 11 O -0.517 6.517 12 N -0.651 5.651 13 C 0.384 3.616 14 N -0.737 5.737 15 C -0.078 4.078 16 C -0.102 4.102 17 C -0.077 4.077 18 C -0.114 4.114 19 C -0.071 4.071 20 C -0.195 4.195 21 C 0.509 3.491 22 F -0.179 7.179 23 F -0.179 7.179 24 F -0.185 7.185 25 C -0.072 4.072 26 H 0.268 0.732 27 H 0.050 0.950 28 H 0.048 0.952 29 H 0.432 0.568 30 H 0.343 0.657 31 H 0.124 0.876 32 H 0.135 0.865 33 H 0.152 0.848 34 H 0.165 0.835 35 H 0.153 0.847 36 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.887 -27.102 -0.891 27.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.185 4.185 3 Si 0.785 3.215 4 H -0.197 1.197 5 H -0.198 1.198 6 H -0.203 1.203 7 C -0.576 4.576 8 H 0.069 0.931 9 C -0.028 4.028 10 C 0.293 3.707 11 O -0.387 6.387 12 N -0.303 5.303 13 C 0.100 3.900 14 N -0.366 5.366 15 C -0.119 4.119 16 C -0.102 4.102 17 C -0.095 4.095 18 C -0.132 4.132 19 C -0.089 4.089 20 C -0.196 4.196 21 C 0.455 3.545 22 F -0.160 7.160 23 F -0.160 7.160 24 F -0.166 7.166 25 C -0.090 4.090 26 H 0.076 0.924 27 H 0.068 0.932 28 H 0.066 0.934 29 H 0.271 0.729 30 H 0.161 0.839 31 H 0.143 0.857 32 H 0.153 0.847 33 H 0.170 0.830 34 H 0.183 0.817 35 H 0.170 0.830 36 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 5.151 -25.888 -0.844 26.409 hybrid contribution -0.006 -0.163 0.542 0.566 sum 5.146 -26.051 -0.302 26.556 Atomic orbital electron populations 1.69999 1.06895 1.28068 1.51200 1.25690 0.95821 1.02430 0.94562 0.85531 0.78461 0.79014 0.78538 1.19705 1.19793 1.20310 1.21363 0.93582 0.91468 1.51153 0.93080 1.19110 0.94095 0.90188 0.99433 1.21817 0.90362 0.84239 0.74288 1.90640 1.18909 1.84351 1.44828 1.43538 1.10726 1.04151 1.71899 1.22005 0.89093 0.88053 0.90877 1.69303 1.03151 1.41776 1.22397 1.20546 0.96730 0.86394 1.08256 1.19638 0.98373 0.99125 0.93081 1.21688 0.94978 0.94536 0.98298 1.21516 0.95825 0.97044 0.98803 1.21277 0.98889 0.97869 0.90852 1.19998 1.01815 1.05452 0.92376 1.18402 0.75894 0.75020 0.85212 1.93220 1.81325 1.49520 1.91922 1.93186 1.33072 1.94183 1.95543 1.93198 1.95138 1.62244 1.66051 1.20979 0.94064 0.94518 0.99459 0.92354 0.93179 0.93362 0.72892 0.83899 0.85748 0.84710 0.83029 0.81716 0.82978 0.84731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.96 13.29 21.44 0.28 -52.68 16 2 C 0.01 0.79 5.46 84.65 0.46 1.25 16 3 Si 0.96 45.44 29.54 68.60 2.03 47.47 16 4 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 5 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 6 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 7 C -0.54 -31.49 8.92 25.60 0.23 -31.26 16 8 H 0.05 3.20 6.75 -2.91 -0.02 3.18 16 9 C 0.01 0.56 5.46 29.10 0.16 0.72 16 10 C 0.51 22.75 7.78 87.66 0.68 23.43 16 11 O -0.52 -28.12 13.72 -2.94 -0.04 -28.16 16 12 N -0.65 -20.13 5.35 -301.63 -1.61 -21.74 16 13 C 0.38 10.70 7.79 137.64 1.07 11.77 16 14 N -0.74 -26.43 11.42 -49.50 -0.57 -26.99 16 15 C -0.08 -1.17 5.86 29.10 0.17 -1.00 16 16 C -0.10 -1.63 3.45 -19.87 -0.07 -1.70 16 17 C -0.08 -1.02 9.53 22.27 0.21 -0.81 16 18 C -0.11 -1.32 10.05 22.27 0.22 -1.09 16 19 C -0.07 -0.98 9.40 22.27 0.21 -0.77 16 20 C -0.20 -3.46 5.45 -19.87 -0.11 -3.57 16 21 C 0.51 9.86 3.36 71.24 0.24 10.10 16 22 F -0.18 -3.44 17.30 44.97 0.78 -2.66 16 23 F -0.18 -3.47 16.46 44.97 0.74 -2.73 16 24 F -0.18 -4.17 16.46 44.97 0.74 -3.43 16 25 C -0.07 -1.30 8.87 22.27 0.20 -1.10 16 26 H 0.27 14.43 8.31 -92.71 -0.77 13.66 16 27 H 0.05 2.45 8.14 -2.39 -0.02 2.43 16 28 H 0.05 2.38 8.14 -2.39 -0.02 2.36 16 29 H 0.43 9.28 8.73 -92.71 -0.81 8.47 16 30 H 0.34 10.74 6.59 -92.71 -0.61 10.13 16 31 H 0.12 1.34 8.09 -2.39 -0.02 1.32 16 32 H 0.13 1.21 8.08 -2.39 -0.02 1.19 16 33 H 0.15 1.49 8.06 -2.91 -0.02 1.46 16 34 H 0.17 0.96 8.06 -2.91 -0.02 0.93 16 35 H 0.15 1.54 7.60 -2.92 -0.02 1.52 16 36 H 0.13 2.40 7.60 -2.92 -0.02 2.38 16 Total: -1.00 -77.61 330.42 5.77 -71.84 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: -0.26 Total: 13.13 kcal Atomic # 6 Polarization: 2.28 SS G_CDS: 3.68 Total: 5.96 kcal Atomic # 7 Polarization: -99.52 SS G_CDS: -1.89 Total: -101.41 kcal Atomic # 8 Polarization: -28.12 SS G_CDS: -0.04 Total: -28.16 kcal Atomic # 9 Polarization: -11.08 SS G_CDS: 2.26 Total: -8.82 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Total: -77.61 5.77 -71.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143204868.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.129 kcal (2) G-P(sol) polarization free energy of solvation -77.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds