Wall clock time and date at job start Tue Mar 31 2020 10:39:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45209 * 1 3 3 C 1.34561 * 116.99984 * 2 1 4 4 O 1.21435 * 119.99798 * 0.02562 * 3 2 1 5 5 N 1.34770 * 119.99845 * 179.97438 * 3 2 1 6 6 N 1.39922 * 125.88228 * 4.52344 * 5 3 2 7 7 C 1.30241 * 109.27536 * 180.26948 * 6 5 3 8 8 C 1.41529 * 108.47088 * 359.75687 * 7 6 5 9 9 C 1.43202 * 126.45946 * 180.02562 * 8 7 6 10 10 N 7.05433 * 149.35506 * 2.84834 * 2 1 3 11 11 C 1.36334 * 125.87604 * 184.37103 * 5 3 2 12 12 N 1.38028 * 126.53265 * 0.02562 * 11 5 3 13 13 C 1.38965 * 119.99694 * 246.96760 * 12 11 5 14 14 C 1.39922 * 119.96858 * 353.28787 * 13 12 11 15 15 N 1.32145 * 120.31925 * 180.02562 * 14 13 12 16 16 C 1.31925 * 120.27428 * 359.68755 * 15 14 13 17 17 C 1.40716 * 119.92299 * 0.58680 * 16 15 14 18 18 C 1.41269 * 120.15294 * 179.71311 * 17 16 15 19 19 H 1.08002 * 120.00404 * 5.60164 * 18 17 16 20 20 C 1.40041 * 119.99634 * 185.60570 * 18 17 16 21 21 N 1.30740 * 119.99923 * 205.08492 * 20 18 17 22 22 Si 1.86795 * 120.00151 * 25.09044 * 20 18 17 23 23 H 1.48509 * 109.47213 * 269.99579 * 22 20 18 24 24 H 1.48494 * 109.47498 * 29.99604 * 22 20 18 25 25 H 1.48498 * 109.47300 * 149.99936 * 22 20 18 26 26 N 1.32263 * 119.96426 * 173.31143 * 13 12 11 27 27 H 1.09007 * 109.47032 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46530 * 299.99255 * 1 2 3 29 29 H 1.09001 * 109.46947 * 59.99852 * 1 2 3 30 30 H 1.07998 * 125.76555 * 179.78056 * 7 6 5 31 31 H 0.96997 * 120.00148 * 66.97668 * 12 11 5 32 32 H 1.07997 * 119.84137 * 359.97438 * 14 13 12 33 33 H 1.07997 * 120.03696 * 180.30140 * 16 15 14 34 34 H 0.97003 * 120.00147 * 354.97537 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0630 1.1989 0.0000 4 8 1.4016 2.2174 0.0005 5 7 3.4088 1.2694 0.0005 6 7 4.2870 0.1837 -0.0883 7 6 5.5139 0.6191 -0.0528 8 6 5.4861 2.0299 0.0568 9 6 6.6209 2.9007 0.1256 10 7 7.5212 3.5913 0.1787 11 6 4.1491 2.4112 0.0848 12 7 3.6638 3.6995 0.1851 13 6 3.8560 4.5975 -0.8579 14 6 4.6597 4.2424 -1.9468 15 7 4.8475 5.0911 -2.9421 16 6 4.2737 6.2788 -2.9207 17 6 3.4680 6.6495 -1.8282 18 6 2.8561 7.9224 -1.7974 19 1 2.9311 8.5785 -2.6519 20 6 2.1523 8.3335 -0.6586 21 7 1.2059 9.2294 -0.7631 22 14 2.5659 7.6020 1.0097 23 1 1.7366 6.3915 1.2387 24 1 4.0033 7.2312 1.0451 25 1 2.2862 8.6016 2.0716 26 7 3.2793 5.7872 -0.8200 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3632 0.5137 0.8901 29 1 -0.3633 0.5139 -0.8900 30 1 6.4025 0.0071 -0.0995 31 1 3.1888 3.9781 0.9836 32 1 5.1294 3.2703 -1.9736 33 1 4.4260 6.9676 -3.7384 34 1 1.0400 9.6626 -1.6150 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001158971294.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:39:25 Heat of formation + Delta-G solvation = 83.112655 kcal Electronic energy + Delta-G solvation = -25478.754584 eV Core-core repulsion = 21607.555259 eV Total energy + Delta-G solvation = -3871.199326 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 314.091 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.48147 -40.34559 -39.49500 -37.06497 -36.45086 -35.90322 -34.28880 -33.16998 -32.51270 -30.50622 -28.95321 -28.13355 -26.02797 -24.77355 -23.28052 -22.62083 -22.00648 -20.77307 -19.56565 -18.52817 -17.87714 -17.60708 -17.28933 -16.97021 -16.32816 -15.66106 -15.39230 -15.15309 -14.70078 -14.27706 -14.05717 -13.69380 -13.59499 -13.21356 -13.16024 -12.93361 -12.63304 -12.54425 -12.51245 -11.81573 -11.61589 -11.33446 -11.30547 -11.21771 -10.87365 -10.79130 -10.32202 -10.23389 -9.71949 -9.37857 -9.28027 -8.89884 -8.03067 -7.58914 -7.41107 -5.06031 0.35927 1.03488 1.70677 2.26319 2.42431 2.54221 2.70408 2.80640 3.26435 3.34357 3.42603 3.53363 3.69698 3.88080 4.13615 4.35186 4.52698 4.60745 4.77952 4.89284 5.06553 5.14922 5.33820 5.40235 5.66093 5.68740 5.72555 5.88026 6.14012 6.35082 6.56633 6.75133 7.04957 7.15527 7.27191 7.37503 7.52936 7.66950 7.81286 7.98688 8.27800 8.81891 9.27119 9.65547 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.012671 B = 0.005556 C = 0.004523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2209.325943 B = 5038.545496 C = 6189.342405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 O -0.336 6.336 3 C 0.678 3.322 4 O -0.492 6.492 5 N -0.355 5.355 6 N -0.253 5.253 7 C 0.139 3.861 8 C -0.161 4.161 9 C 0.289 3.711 10 N -0.402 5.402 11 C 0.437 3.563 12 N -0.646 5.646 13 C 0.390 3.610 14 C -0.158 4.158 15 N -0.392 5.392 16 C -0.072 4.072 17 C 0.231 3.769 18 C -0.450 4.450 19 H 0.095 0.905 20 C 0.055 3.945 21 N -0.774 5.774 22 Si 1.126 2.874 23 H -0.276 1.276 24 H -0.281 1.281 25 H -0.314 1.314 26 N -0.576 5.576 27 H 0.112 0.888 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.214 0.786 31 H 0.422 0.578 32 H 0.129 0.871 33 H 0.141 0.859 34 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.142 -17.077 4.274 17.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 O -0.248 6.248 3 C 0.434 3.566 4 O -0.372 6.372 5 N -0.159 5.159 6 N -0.071 5.071 7 C -0.055 4.055 8 C -0.178 4.178 9 C -0.028 4.028 10 N -0.078 5.078 11 C 0.217 3.783 12 N -0.283 5.283 13 C 0.152 3.848 14 C -0.317 4.317 15 N -0.102 5.102 16 C -0.245 4.245 17 C 0.107 3.893 18 C -0.482 4.482 19 H 0.113 0.887 20 C -0.172 4.172 21 N -0.393 5.393 22 Si 0.955 3.045 23 H -0.202 1.202 24 H -0.208 1.208 25 H -0.245 1.245 26 N -0.304 5.304 27 H 0.131 0.869 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.231 0.769 31 H 0.263 0.737 32 H 0.146 0.854 33 H 0.159 0.841 34 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -0.199 -16.681 5.643 17.611 hybrid contribution -0.133 0.639 -1.490 1.627 sum -0.332 -16.042 4.152 16.574 Atomic orbital electron populations 1.23495 0.73125 1.04514 1.03517 1.86399 1.24736 1.28619 1.85058 1.17500 0.80161 0.83453 0.75479 1.91229 1.61801 1.35070 1.49112 1.46425 1.04436 1.06699 1.58385 1.77479 0.99238 1.06897 1.23472 1.24264 0.96313 0.91510 0.93383 1.15896 0.86785 0.92305 1.22764 1.23899 0.92150 0.93060 0.93645 1.81261 1.10633 1.06557 1.09352 1.17708 0.87575 0.80452 0.92525 1.40709 1.63051 1.04370 1.20182 1.18831 0.91394 0.88536 0.86075 1.21907 1.12180 1.02202 0.95400 1.67598 1.16517 1.02388 1.23714 1.22995 1.04741 0.95218 1.01526 1.19033 0.89956 0.92659 0.87634 1.20764 1.26216 0.98588 1.02681 0.88736 1.27691 0.89300 0.93549 1.06614 1.70607 1.19091 1.18252 1.31400 0.82463 0.77816 0.74094 0.70096 1.20202 1.20791 1.24474 1.67098 1.29725 1.02944 1.30673 0.86930 0.91109 0.91075 0.76908 0.73693 0.85366 0.84147 0.89755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.39 10.56 101.05 1.07 1.46 16 2 O -0.34 -4.03 10.44 -40.11 -0.42 -4.45 16 3 C 0.68 10.04 8.68 54.05 0.47 10.51 16 4 O -0.49 -8.63 15.54 -19.22 -0.30 -8.93 16 5 N -0.35 -5.08 3.64 -15.33 -0.06 -5.14 16 6 N -0.25 -2.99 12.25 30.88 0.38 -2.61 16 7 C 0.14 1.32 11.98 -16.97 -0.20 1.12 16 8 C -0.16 -2.13 4.79 -106.41 -0.51 -2.64 16 9 C 0.29 4.46 14.45 -22.47 -0.32 4.14 16 10 N -0.40 -7.14 18.54 41.83 0.78 -6.37 16 11 C 0.44 6.78 6.19 -152.51 -0.94 5.84 16 12 N -0.65 -12.07 4.33 -10.83 -0.05 -12.11 16 13 C 0.39 8.82 7.59 -154.88 -1.18 7.64 16 14 C -0.16 -3.57 9.67 -16.79 -0.16 -3.73 16 15 N -0.39 -9.44 10.47 -12.11 -0.13 -9.57 16 16 C -0.07 -1.75 10.97 -16.58 -0.18 -1.94 16 17 C 0.23 5.94 6.25 -84.83 -0.53 5.41 16 18 C -0.45 -11.58 9.45 -37.75 -0.36 -11.94 16 19 H 0.09 2.35 8.06 -52.49 -0.42 1.93 16 20 C 0.05 1.40 5.48 -17.34 -0.10 1.31 16 21 N -0.77 -19.70 13.65 55.55 0.76 -18.94 16 22 Si 1.13 26.33 25.91 -169.99 -4.40 21.92 16 23 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 24 H -0.28 -6.74 7.00 56.52 0.40 -6.34 16 25 H -0.31 -7.10 7.11 56.52 0.40 -6.70 16 26 N -0.58 -14.47 5.92 -10.11 -0.06 -14.53 16 27 H 0.11 0.53 8.14 -51.92 -0.42 0.11 16 28 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.21 0.96 8.06 -52.49 -0.42 0.53 16 31 H 0.42 7.54 8.94 -40.82 -0.37 7.17 16 32 H 0.13 2.62 5.60 -52.49 -0.29 2.32 16 33 H 0.14 3.11 8.06 -52.49 -0.42 2.68 16 34 H 0.29 7.01 8.73 -40.82 -0.36 6.65 16 LS Contribution 319.82 15.07 4.82 4.82 Total: -1.00 -32.06 319.82 -3.98 -36.04 By element: Atomic # 1 Polarization: 5.04 SS G_CDS: -2.35 Total: 2.69 kcal Atomic # 6 Polarization: 20.13 SS G_CDS: -2.95 Total: 17.19 kcal Atomic # 7 Polarization: -70.90 SS G_CDS: 1.62 Total: -69.28 kcal Atomic # 8 Polarization: -12.66 SS G_CDS: -0.72 Total: -13.38 kcal Atomic # 14 Polarization: 26.33 SS G_CDS: -4.40 Total: 21.92 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -32.06 -3.98 -36.04 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158971294.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.150 kcal (2) G-P(sol) polarization free energy of solvation -32.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds