Wall clock time and date at job start Tue Mar 31 2020 10:39:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45209 * 1 3 3 C 1.34561 * 116.99984 * 2 1 4 4 O 1.21435 * 119.99798 * 0.02562 * 3 2 1 5 5 N 1.34770 * 119.99845 * 179.97438 * 3 2 1 6 6 N 1.39922 * 125.88228 * 4.52344 * 5 3 2 7 7 C 1.30241 * 109.27536 * 180.26948 * 6 5 3 8 8 C 1.41529 * 108.47088 * 359.75687 * 7 6 5 9 9 C 1.43202 * 126.45946 * 180.02562 * 8 7 6 10 10 N 7.05433 * 149.35506 * 2.84834 * 2 1 3 11 11 C 1.36334 * 125.87604 * 184.37103 * 5 3 2 12 12 N 1.38028 * 126.53265 * 0.02562 * 11 5 3 13 13 C 1.38965 * 119.99694 * 246.96760 * 12 11 5 14 14 C 1.39922 * 119.96858 * 353.28787 * 13 12 11 15 15 N 1.32145 * 120.31925 * 180.02562 * 14 13 12 16 16 C 1.31925 * 120.27428 * 359.68755 * 15 14 13 17 17 C 1.40716 * 119.92299 * 0.58680 * 16 15 14 18 18 C 1.41269 * 120.15294 * 179.71311 * 17 16 15 19 19 H 1.08002 * 120.00404 * 5.60164 * 18 17 16 20 20 C 1.40041 * 119.99634 * 185.60570 * 18 17 16 21 21 N 1.30740 * 119.99923 * 205.08492 * 20 18 17 22 22 Si 1.86795 * 120.00151 * 25.09044 * 20 18 17 23 23 H 1.48509 * 109.47213 * 269.99579 * 22 20 18 24 24 H 1.48494 * 109.47498 * 29.99604 * 22 20 18 25 25 H 1.48498 * 109.47300 * 149.99936 * 22 20 18 26 26 N 1.32263 * 119.96426 * 173.31143 * 13 12 11 27 27 H 1.09007 * 109.47032 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46530 * 299.99255 * 1 2 3 29 29 H 1.09001 * 109.46947 * 59.99852 * 1 2 3 30 30 H 1.07998 * 125.76555 * 179.78056 * 7 6 5 31 31 H 0.96997 * 120.00148 * 66.97668 * 12 11 5 32 32 H 1.07997 * 119.84137 * 359.97438 * 14 13 12 33 33 H 1.07997 * 120.03696 * 180.30140 * 16 15 14 34 34 H 0.97003 * 120.00147 * 354.97537 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0630 1.1989 0.0000 4 8 1.4016 2.2174 0.0005 5 7 3.4088 1.2694 0.0005 6 7 4.2870 0.1837 -0.0883 7 6 5.5139 0.6191 -0.0528 8 6 5.4861 2.0299 0.0568 9 6 6.6209 2.9007 0.1256 10 7 7.5212 3.5913 0.1787 11 6 4.1491 2.4112 0.0848 12 7 3.6638 3.6995 0.1851 13 6 3.8560 4.5975 -0.8579 14 6 4.6597 4.2424 -1.9468 15 7 4.8475 5.0911 -2.9421 16 6 4.2737 6.2788 -2.9207 17 6 3.4680 6.6495 -1.8282 18 6 2.8561 7.9224 -1.7974 19 1 2.9311 8.5785 -2.6519 20 6 2.1523 8.3335 -0.6586 21 7 1.2059 9.2294 -0.7631 22 14 2.5659 7.6020 1.0097 23 1 1.7366 6.3915 1.2387 24 1 4.0033 7.2312 1.0451 25 1 2.2862 8.6016 2.0716 26 7 3.2793 5.7872 -0.8200 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3632 0.5137 0.8901 29 1 -0.3633 0.5139 -0.8900 30 1 6.4025 0.0071 -0.0995 31 1 3.1888 3.9781 0.9836 32 1 5.1294 3.2703 -1.9736 33 1 4.4260 6.9676 -3.7384 34 1 1.0400 9.6626 -1.6150 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001158971294.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:39:25 Heat of formation + Delta-G solvation = 61.110970 kcal Electronic energy + Delta-G solvation = -25479.708649 eV Core-core repulsion = 21607.555259 eV Total energy + Delta-G solvation = -3872.153390 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 314.091 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.58232 -41.52207 -41.16881 -38.14929 -37.79451 -37.32873 -36.19320 -34.38662 -34.22118 -32.08048 -30.36690 -28.92417 -27.90489 -25.86753 -24.92358 -23.97331 -23.46879 -21.99804 -21.01482 -20.19062 -19.28514 -18.80081 -18.42305 -18.25268 -17.73283 -17.33180 -16.96584 -16.28122 -15.92944 -15.77163 -15.36310 -15.10468 -15.02161 -14.79218 -14.49203 -14.39925 -14.10589 -13.85714 -13.50128 -13.33075 -13.22888 -12.93633 -12.75936 -12.44724 -12.29020 -12.09716 -12.06463 -11.59489 -11.37715 -11.26067 -10.97910 -10.30205 -9.94626 -9.35562 -9.25985 -7.00664 -0.82120 -0.05180 0.42530 0.68404 0.76433 1.33262 1.42325 1.47635 1.53110 1.56580 1.83041 2.23901 2.26684 2.33013 2.44279 2.74688 3.35075 3.48124 3.58771 3.84658 3.86521 4.01887 4.13127 4.13923 4.24608 4.40969 4.59339 4.67550 4.73821 4.90933 5.17853 5.21782 5.28996 5.53008 5.68384 5.80979 6.02309 6.11057 6.37102 6.43691 6.47970 6.95326 7.39690 7.71392 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.012671 B = 0.005556 C = 0.004523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2209.325943 B = 5038.545496 C = 6189.342405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.332 6.332 3 C 0.678 3.322 4 O -0.529 6.529 5 N -0.358 5.358 6 N -0.252 5.252 7 C 0.172 3.828 8 C -0.148 4.148 9 C 0.307 3.693 10 N -0.441 5.441 11 C 0.408 3.592 12 N -0.646 5.646 13 C 0.391 3.609 14 C -0.152 4.152 15 N -0.399 5.399 16 C -0.092 4.092 17 C 0.220 3.780 18 C -0.474 4.474 19 H 0.092 0.908 20 C 0.034 3.966 21 N -0.788 5.788 22 Si 1.153 2.847 23 H -0.276 1.276 24 H -0.293 1.293 25 H -0.302 1.302 26 N -0.596 5.596 27 H 0.153 0.847 28 H 0.072 0.928 29 H 0.064 0.936 30 H 0.271 0.729 31 H 0.423 0.577 32 H 0.152 0.848 33 H 0.155 0.845 34 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.903 -20.196 4.803 20.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.243 6.243 3 C 0.435 3.565 4 O -0.412 6.412 5 N -0.162 5.162 6 N -0.069 5.069 7 C -0.022 4.022 8 C -0.164 4.164 9 C -0.009 4.009 10 N -0.118 5.118 11 C 0.190 3.810 12 N -0.282 5.282 13 C 0.151 3.849 14 C -0.312 4.312 15 N -0.110 5.110 16 C -0.262 4.262 17 C 0.096 3.904 18 C -0.506 4.506 19 H 0.110 0.890 20 C -0.190 4.190 21 N -0.408 5.408 22 Si 0.981 3.019 23 H -0.202 1.202 24 H -0.220 1.220 25 H -0.232 1.232 26 N -0.326 5.326 27 H 0.170 0.830 28 H 0.091 0.909 29 H 0.083 0.917 30 H 0.287 0.713 31 H 0.264 0.736 32 H 0.169 0.831 33 H 0.172 0.828 34 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 0.549 -19.839 6.171 20.784 hybrid contribution -0.307 1.342 -1.645 2.145 sum 0.242 -18.497 4.526 19.044 Atomic orbital electron populations 1.23882 0.71077 1.07051 1.03353 1.86427 1.26640 1.26943 1.84338 1.17661 0.80294 0.83756 0.74788 1.91206 1.62631 1.36391 1.50965 1.46375 1.04616 1.06682 1.58508 1.77566 0.99676 1.05929 1.23723 1.25137 0.97083 0.89748 0.90241 1.16049 0.85067 0.93778 1.21554 1.24104 0.91850 0.92394 0.92567 1.81296 1.12199 1.07665 1.10635 1.17846 0.88480 0.79690 0.94967 1.40561 1.63075 1.05308 1.19246 1.19033 0.90530 0.88302 0.87011 1.22308 1.11446 1.02655 0.94818 1.67629 1.16577 1.02468 1.24316 1.23164 1.05251 0.95850 1.01942 1.19218 0.90084 0.92845 0.88296 1.20799 1.27621 0.99131 1.03049 0.89025 1.28233 0.89166 0.93643 1.07915 1.70608 1.19532 1.18980 1.31719 0.82101 0.76837 0.73952 0.69013 1.20206 1.22027 1.23226 1.67113 1.30555 1.03990 1.30900 0.82966 0.90904 0.91700 0.71332 0.73598 0.83081 0.82779 0.89534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.57 10.56 113.37 1.20 1.76 16 2 O -0.33 -7.28 10.44 -54.70 -0.57 -7.85 16 3 C 0.68 19.15 8.68 129.79 1.13 20.28 16 4 O -0.53 -18.41 15.54 20.05 0.31 -18.09 16 5 N -0.36 -9.44 3.64 -432.89 -1.57 -11.01 16 6 N -0.25 -4.98 12.25 -56.22 -0.69 -5.67 16 7 C 0.17 2.43 11.98 85.74 1.03 3.46 16 8 C -0.15 -3.44 4.79 -21.02 -0.10 -3.54 16 9 C 0.31 8.73 14.45 88.33 1.28 10.00 16 10 N -0.44 -14.97 18.54 19.00 0.35 -14.62 16 11 C 0.41 11.87 6.19 132.16 0.82 12.69 16 12 N -0.65 -23.61 4.33 -188.17 -0.82 -24.43 16 13 C 0.39 17.47 7.59 133.31 1.01 18.48 16 14 C -0.15 -6.68 9.67 85.05 0.82 -5.86 16 15 N -0.40 -18.95 10.47 -192.23 -2.01 -20.96 16 16 C -0.09 -4.48 10.97 85.28 0.94 -3.54 16 17 C 0.22 11.46 6.25 40.16 0.25 11.72 16 18 C -0.47 -24.89 9.45 23.45 0.22 -24.67 16 19 H 0.09 4.71 8.06 -2.91 -0.02 4.69 16 20 C 0.03 1.78 5.48 85.29 0.47 2.24 16 21 N -0.79 -40.59 13.65 21.84 0.30 -40.29 16 22 Si 1.15 53.83 25.91 68.60 1.78 55.61 16 23 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 24 H -0.29 -14.10 7.00 99.48 0.70 -13.41 16 25 H -0.30 -13.35 7.11 99.48 0.71 -12.64 16 26 N -0.60 -30.10 5.92 -185.90 -1.10 -31.20 16 27 H 0.15 0.94 8.14 -2.38 -0.02 0.92 16 28 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.27 0.55 8.06 -2.91 -0.02 0.53 16 31 H 0.42 15.06 8.94 -92.71 -0.83 14.23 16 32 H 0.15 5.81 5.60 -2.91 -0.02 5.79 16 33 H 0.15 6.88 8.06 -2.91 -0.02 6.86 16 34 H 0.29 14.38 8.73 -92.71 -0.81 13.57 16 Total: -1.00 -70.32 319.82 5.36 -64.96 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: 0.33 Total: 10.54 kcal Atomic # 6 Polarization: 33.96 SS G_CDS: 9.05 Total: 43.02 kcal Atomic # 7 Polarization: -142.64 SS G_CDS: -5.54 Total: -148.18 kcal Atomic # 8 Polarization: -25.69 SS G_CDS: -0.26 Total: -25.95 kcal Atomic # 14 Polarization: 53.83 SS G_CDS: 1.78 Total: 55.61 kcal Total: -70.32 5.36 -64.96 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158971294.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.068 kcal (2) G-P(sol) polarization free energy of solvation -70.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.957 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds