Wall clock time and date at job start Tue Mar 31 2020 11:14:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38168 * 120.08119 * 2 1 4 4 F 1.35104 * 119.93221 * 359.97438 * 3 2 1 5 5 C 1.38581 * 120.13212 * 179.70783 * 3 2 1 6 6 C 1.38286 * 120.28861 * 0.27027 * 5 3 2 7 7 C 1.38105 * 120.16175 * 0.02562 * 6 5 3 8 8 Cl 1.73605 * 120.06901 * 180.02562 * 7 6 5 9 9 C 1.39576 * 120.08403 * 180.25131 * 2 1 3 10 10 C 1.47773 * 120.13953 * 0.02562 * 9 2 1 11 11 O 1.21558 * 119.99968 * 270.26912 * 10 9 2 12 12 N 1.34774 * 119.99958 * 90.27758 * 10 9 2 13 13 C 1.46502 * 119.99721 * 179.97438 * 12 10 9 14 14 C 1.53002 * 109.47124 * 179.97438 * 13 12 10 15 15 C 1.53004 * 109.47086 * 179.97438 * 14 13 12 16 16 N 1.46500 * 109.46731 * 180.02562 * 15 14 13 17 17 C 1.36937 * 120.00017 * 180.02562 * 16 15 14 18 18 H 1.08007 * 119.99833 * 359.97438 * 17 16 15 19 19 C 1.38812 * 120.00495 * 179.97438 * 17 16 15 20 20 N 1.31620 * 119.99783 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00207 * 179.97438 * 19 17 16 22 22 H 1.48495 * 109.47184 * 59.99807 * 21 19 17 23 23 H 1.48502 * 109.47228 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.47030 * 299.99883 * 21 19 17 25 25 H 1.09004 * 109.47665 * 90.00071 * 1 2 3 26 26 H 1.09007 * 109.46994 * 209.99955 * 1 2 3 27 27 H 1.09001 * 109.47264 * 329.99599 * 1 2 3 28 28 H 1.07997 * 119.85237 * 180.29760 * 5 3 2 29 29 H 1.08006 * 119.91659 * 180.02562 * 6 5 3 30 30 H 0.96997 * 120.00588 * 359.97438 * 12 10 9 31 31 H 1.08994 * 109.47119 * 299.99475 * 13 12 10 32 32 H 1.09000 * 109.47553 * 59.99629 * 13 12 10 33 33 H 1.08999 * 109.47436 * 300.00076 * 14 13 12 34 34 H 1.09005 * 109.46894 * 60.00070 * 14 13 12 35 35 H 1.08994 * 109.47217 * 299.99881 * 15 14 13 36 36 H 1.08998 * 109.46761 * 60.00171 * 15 14 13 37 37 H 0.97005 * 120.00482 * 359.97438 * 16 15 14 38 38 H 0.97000 * 119.99965 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1995 1.1956 0.0000 4 9 1.5242 2.3658 -0.0005 5 6 3.5853 1.1968 0.0061 6 6 4.2838 0.0034 0.0066 7 6 3.6038 -1.1987 0.0005 8 17 4.4832 -2.6955 0.0018 9 6 2.2066 -1.2077 -0.0053 10 6 1.4727 -2.4903 -0.0115 11 8 1.1662 -3.0203 1.0387 12 7 1.1434 -3.0727 -1.1815 13 6 0.4164 -4.3445 -1.1876 14 6 0.1690 -4.7837 -2.6322 15 6 -0.5897 -6.1123 -2.6385 16 7 -0.8260 -6.5330 -4.0218 17 6 -1.4930 -7.7012 -4.2777 18 1 -1.8446 -8.3127 -3.4597 19 6 -1.7174 -8.0997 -5.5883 20 7 -1.2895 -7.3544 -6.5852 21 14 -2.6267 -9.6937 -5.9373 22 1 -3.9867 -9.6278 -5.3446 23 1 -2.7361 -9.8901 -7.4052 24 1 -1.8808 -10.8302 -5.3395 25 1 -0.3634 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3634 0.8899 0.5139 28 1 4.1220 2.1340 0.0109 29 1 5.3638 0.0113 0.0118 30 1 1.3878 -2.6497 -2.0195 31 1 1.0065 -5.1028 -0.6730 32 1 -0.5388 -4.2195 -0.6776 33 1 -0.4212 -4.0253 -3.1465 34 1 1.1241 -4.9087 -3.1425 35 1 0.0009 -6.8705 -2.1244 36 1 -1.5447 -5.9877 -2.1281 37 1 -0.5106 -5.9837 -4.7565 38 1 -1.4466 -7.6326 -7.5010 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161413492.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:26 Heat of formation + Delta-G solvation = -62.992222 kcal Electronic energy + Delta-G solvation = -22681.175641 eV Core-core repulsion = 18884.828265 eV Total energy + Delta-G solvation = -3796.347376 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.094 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.42746 -40.64208 -38.74977 -36.92739 -36.08344 -34.40149 -33.49559 -32.08366 -31.12583 -29.49555 -27.74835 -25.66606 -24.10910 -22.56271 -22.31888 -21.28517 -20.62874 -18.49771 -17.55453 -17.05604 -16.78095 -16.59103 -16.27646 -16.03121 -15.55588 -14.69434 -14.48767 -14.26239 -13.96118 -13.90927 -13.74202 -13.32966 -13.29795 -13.25572 -13.03343 -12.46152 -12.39275 -12.05041 -11.71013 -11.57894 -11.39282 -10.99825 -10.93114 -10.83088 -10.63922 -10.25223 -10.05417 -9.71730 -9.54898 -9.18836 -9.05864 -8.88745 -6.95050 -5.78261 -3.07341 0.27081 0.43177 1.58307 2.27991 2.68080 2.93969 3.44025 3.48120 3.49309 3.67658 4.02655 4.13315 4.34528 4.51470 4.57953 4.81051 4.95752 5.09436 5.13020 5.18642 5.26249 5.40667 5.42869 5.55867 5.57262 5.58259 5.62907 5.90883 6.01977 6.09174 6.15686 6.29420 6.31650 6.76294 6.80568 7.27013 7.68561 7.93569 8.40716 9.51767 10.08609 10.43210 11.44680 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.021034 B = 0.002421 C = 0.002315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.871721 B =11563.657241 C =12093.740256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.071 4.071 3 C 0.101 3.899 4 F -0.128 7.128 5 C -0.123 4.123 6 C -0.089 4.089 7 C -0.016 4.016 8 Cl -0.042 7.042 9 C -0.090 4.090 10 C 0.564 3.436 11 O -0.520 6.520 12 N -0.713 5.713 13 C 0.122 3.878 14 C -0.138 4.138 15 C 0.157 3.843 16 N -0.734 5.734 17 C -0.241 4.241 18 H 0.071 0.929 19 C -0.014 4.014 20 N -0.935 5.935 21 Si 0.909 3.091 22 H -0.285 1.285 23 H -0.291 1.291 24 H -0.285 1.285 25 H 0.086 0.914 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.150 0.850 29 H 0.150 0.850 30 H 0.403 0.597 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.022 0.978 36 H 0.022 0.978 37 H 0.384 0.616 38 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.959 20.881 13.989 27.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.073 4.073 3 C 0.082 3.918 4 F -0.107 7.107 5 C -0.142 4.142 6 C -0.107 4.107 7 C -0.043 4.043 8 Cl -0.012 7.012 9 C -0.094 4.094 10 C 0.348 3.652 11 O -0.396 6.396 12 N -0.363 5.363 13 C -0.001 4.001 14 C -0.176 4.176 15 C 0.029 3.971 16 N -0.378 5.378 17 C -0.372 4.372 18 H 0.089 0.911 19 C -0.210 4.210 20 N -0.583 5.583 21 Si 0.740 3.260 22 H -0.212 1.212 23 H -0.217 1.217 24 H -0.212 1.212 25 H 0.104 0.896 26 H 0.099 0.901 27 H 0.099 0.901 28 H 0.168 0.832 29 H 0.168 0.832 30 H 0.238 0.762 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.040 0.960 36 H 0.040 0.960 37 H 0.217 0.783 38 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 11.674 20.207 14.760 27.613 hybrid contribution -0.189 -0.353 -0.931 1.013 sum 11.485 19.854 13.829 26.783 Atomic orbital electron populations 1.20889 0.88732 1.04562 1.03931 1.19876 0.97598 0.90035 0.99795 1.17368 0.89956 0.80963 1.03563 1.91532 1.80218 1.45216 1.93725 1.21232 0.92044 0.99708 1.01199 1.20860 1.01103 0.89300 0.99462 1.20948 0.90820 0.88956 1.03604 1.98433 1.75119 1.31175 1.96515 1.19595 0.91914 0.94015 1.03911 1.17853 0.79117 0.83644 0.84599 1.90848 1.53625 1.63827 1.31322 1.46053 1.57785 1.24484 1.08013 1.21449 0.96517 0.83808 0.98360 1.21955 1.01828 0.99584 0.94248 1.20512 0.96100 0.91693 0.88827 1.42328 1.68802 1.25741 1.00929 1.19199 1.28196 0.98021 0.91798 0.91145 1.24752 1.01669 0.99034 0.95552 1.69649 1.51551 1.38861 0.98278 0.86241 0.79644 0.83279 0.76875 1.21219 1.21661 1.21213 0.89555 0.90079 0.90071 0.83226 0.83182 0.76230 0.90974 0.90989 0.91190 0.91166 0.96023 0.96031 0.78287 0.93439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.07 9.43 36.00 0.34 -0.73 16 2 C -0.07 -0.67 5.92 -104.15 -0.62 -1.29 16 3 C 0.10 0.84 7.23 -39.48 -0.29 0.55 16 4 F -0.13 -1.11 16.47 2.25 0.04 -1.07 16 5 C -0.12 -0.79 10.02 -39.44 -0.40 -1.19 16 6 C -0.09 -0.61 9.81 -39.61 -0.39 -1.00 16 7 C -0.02 -0.15 6.35 -39.08 -0.25 -0.40 16 8 Cl -0.04 -0.43 28.04 -51.86 -1.45 -1.88 16 9 C -0.09 -0.96 5.63 -104.94 -0.59 -1.55 16 10 C 0.56 7.17 4.78 -12.36 -0.06 7.11 16 11 O -0.52 -8.47 17.10 5.31 0.09 -8.38 16 12 N -0.71 -8.14 5.55 -61.27 -0.34 -8.48 16 13 C 0.12 1.59 5.67 -4.04 -0.02 1.57 16 14 C -0.14 -2.04 5.44 -26.73 -0.15 -2.18 16 15 C 0.16 3.07 6.26 -4.04 -0.03 3.05 16 16 N -0.73 -18.52 5.60 -59.91 -0.34 -18.86 16 17 C -0.24 -6.78 9.99 -15.06 -0.15 -6.93 16 18 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 19 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 20 N -0.93 -28.22 13.06 55.49 0.72 -27.50 16 21 Si 0.91 22.43 29.55 -169.99 -5.02 17.41 16 22 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 23 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 24 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 25 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 26 H 0.08 0.80 7.09 -51.93 -0.37 0.44 16 27 H 0.08 0.61 7.64 -51.93 -0.40 0.22 16 28 H 0.15 0.57 8.06 -52.49 -0.42 0.14 16 29 H 0.15 0.66 8.06 -52.48 -0.42 0.24 16 30 H 0.40 3.78 8.46 -40.82 -0.35 3.44 16 31 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 32 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.38 10.06 7.67 -40.82 -0.31 9.75 16 38 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 348.84 15.07 5.26 5.26 Total: -1.00 -32.93 348.84 -8.50 -41.43 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: -4.77 Total: 5.56 kcal Atomic # 6 Polarization: -0.80 SS G_CDS: -2.68 Total: -3.49 kcal Atomic # 7 Polarization: -54.88 SS G_CDS: 0.05 Total: -54.83 kcal Atomic # 8 Polarization: -8.47 SS G_CDS: 0.09 Total: -8.38 kcal Atomic # 9 Polarization: -1.11 SS G_CDS: 0.04 Total: -1.07 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.41 kcal Atomic # 17 Polarization: -0.43 SS G_CDS: -1.45 Total: -1.88 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.93 -8.50 -41.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161413492.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.560 kcal (2) G-P(sol) polarization free energy of solvation -32.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds