Wall clock time and date at job start Tue Mar 31 2020 11:14:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38168 * 120.08119 * 2 1 4 4 F 1.35104 * 119.93221 * 359.97438 * 3 2 1 5 5 C 1.38581 * 120.13212 * 179.70783 * 3 2 1 6 6 C 1.38286 * 120.28861 * 0.27027 * 5 3 2 7 7 C 1.38105 * 120.16175 * 0.02562 * 6 5 3 8 8 Cl 1.73605 * 120.06901 * 180.02562 * 7 6 5 9 9 C 1.39576 * 120.08403 * 180.25131 * 2 1 3 10 10 C 1.47773 * 120.13953 * 0.02562 * 9 2 1 11 11 O 1.21558 * 119.99968 * 270.26912 * 10 9 2 12 12 N 1.34774 * 119.99958 * 90.27758 * 10 9 2 13 13 C 1.46502 * 119.99721 * 179.97438 * 12 10 9 14 14 C 1.53002 * 109.47124 * 179.97438 * 13 12 10 15 15 C 1.53004 * 109.47086 * 179.97438 * 14 13 12 16 16 N 1.46500 * 109.46731 * 180.02562 * 15 14 13 17 17 C 1.36937 * 120.00017 * 180.02562 * 16 15 14 18 18 H 1.08007 * 119.99833 * 359.97438 * 17 16 15 19 19 C 1.38812 * 120.00495 * 179.97438 * 17 16 15 20 20 N 1.31620 * 119.99783 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00207 * 179.97438 * 19 17 16 22 22 H 1.48495 * 109.47184 * 59.99807 * 21 19 17 23 23 H 1.48502 * 109.47228 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.47030 * 299.99883 * 21 19 17 25 25 H 1.09004 * 109.47665 * 90.00071 * 1 2 3 26 26 H 1.09007 * 109.46994 * 209.99955 * 1 2 3 27 27 H 1.09001 * 109.47264 * 329.99599 * 1 2 3 28 28 H 1.07997 * 119.85237 * 180.29760 * 5 3 2 29 29 H 1.08006 * 119.91659 * 180.02562 * 6 5 3 30 30 H 0.96997 * 120.00588 * 359.97438 * 12 10 9 31 31 H 1.08994 * 109.47119 * 299.99475 * 13 12 10 32 32 H 1.09000 * 109.47553 * 59.99629 * 13 12 10 33 33 H 1.08999 * 109.47436 * 300.00076 * 14 13 12 34 34 H 1.09005 * 109.46894 * 60.00070 * 14 13 12 35 35 H 1.08994 * 109.47217 * 299.99881 * 15 14 13 36 36 H 1.08998 * 109.46761 * 60.00171 * 15 14 13 37 37 H 0.97005 * 120.00482 * 359.97438 * 16 15 14 38 38 H 0.97000 * 119.99965 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1995 1.1956 0.0000 4 9 1.5242 2.3658 -0.0005 5 6 3.5853 1.1968 0.0061 6 6 4.2838 0.0034 0.0066 7 6 3.6038 -1.1987 0.0005 8 17 4.4832 -2.6955 0.0018 9 6 2.2066 -1.2077 -0.0053 10 6 1.4727 -2.4903 -0.0115 11 8 1.1662 -3.0203 1.0387 12 7 1.1434 -3.0727 -1.1815 13 6 0.4164 -4.3445 -1.1876 14 6 0.1690 -4.7837 -2.6322 15 6 -0.5897 -6.1123 -2.6385 16 7 -0.8260 -6.5330 -4.0218 17 6 -1.4930 -7.7012 -4.2777 18 1 -1.8446 -8.3127 -3.4597 19 6 -1.7174 -8.0997 -5.5883 20 7 -1.2895 -7.3544 -6.5852 21 14 -2.6267 -9.6937 -5.9373 22 1 -3.9867 -9.6278 -5.3446 23 1 -2.7361 -9.8901 -7.4052 24 1 -1.8808 -10.8302 -5.3395 25 1 -0.3634 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3634 0.8899 0.5139 28 1 4.1220 2.1340 0.0109 29 1 5.3638 0.0113 0.0118 30 1 1.3878 -2.6497 -2.0195 31 1 1.0065 -5.1028 -0.6730 32 1 -0.5388 -4.2195 -0.6776 33 1 -0.4212 -4.0253 -3.1465 34 1 1.1241 -4.9087 -3.1425 35 1 0.0009 -6.8705 -2.1244 36 1 -1.5447 -5.9877 -2.1281 37 1 -0.5106 -5.9837 -4.7565 38 1 -1.4466 -7.6326 -7.5010 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161413492.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:26 Heat of formation + Delta-G solvation = -84.279901 kcal Electronic energy + Delta-G solvation = -22682.098744 eV Core-core repulsion = 18884.828265 eV Total energy + Delta-G solvation = -3797.270479 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.094 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -50.06564 -41.50399 -39.58550 -37.66210 -37.52139 -35.95657 -34.21317 -33.71176 -32.07112 -31.00461 -28.43975 -27.12994 -25.31765 -24.01841 -23.01917 -22.61414 -21.64617 -19.48324 -18.94980 -18.24905 -17.53893 -17.42177 -17.17951 -16.82040 -16.70284 -16.49867 -15.50249 -15.36145 -15.29477 -14.84139 -14.66088 -14.54947 -14.50013 -14.07791 -13.95517 -13.72542 -13.31521 -13.09908 -12.79137 -12.72908 -12.63242 -12.45375 -12.26535 -12.15362 -12.09737 -12.06806 -11.80582 -11.20816 -10.93716 -10.24690 -10.20774 -9.71973 -9.02026 -7.96545 -5.25739 -0.39275 -0.19167 0.87243 1.30357 1.47751 1.50728 1.56859 1.90435 2.15585 2.56116 3.03202 3.35228 3.37288 3.46656 3.65996 3.73772 3.90526 4.07068 4.20081 4.26987 4.29018 4.44969 4.52943 4.55072 4.70235 4.71495 4.81979 4.85804 4.87529 4.90926 4.99462 5.21352 5.30837 5.32612 5.48609 5.49880 6.25897 6.32165 6.97506 7.32622 8.07405 8.31055 9.26794 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.021034 B = 0.002421 C = 0.002315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.871721 B =11563.657241 C =12093.740256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.079 4.079 3 C 0.095 3.905 4 F -0.130 7.130 5 C -0.106 4.106 6 C -0.079 4.079 7 C -0.025 4.025 8 Cl -0.055 7.055 9 C -0.109 4.109 10 C 0.569 3.431 11 O -0.562 6.562 12 N -0.703 5.703 13 C 0.133 3.867 14 C -0.119 4.119 15 C 0.153 3.847 16 N -0.747 5.747 17 C -0.250 4.250 18 H 0.075 0.925 19 C -0.074 4.074 20 N -0.969 5.969 21 Si 0.974 3.026 22 H -0.277 1.277 23 H -0.294 1.294 24 H -0.278 1.278 25 H 0.095 0.905 26 H 0.062 0.938 27 H 0.089 0.911 28 H 0.184 0.816 29 H 0.180 0.820 30 H 0.415 0.585 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.022 0.978 36 H 0.024 0.976 37 H 0.376 0.624 38 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.832 22.201 14.358 29.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.081 4.081 3 C 0.075 3.925 4 F -0.109 7.109 5 C -0.124 4.124 6 C -0.097 4.097 7 C -0.053 4.053 8 Cl -0.026 7.026 9 C -0.113 4.113 10 C 0.354 3.646 11 O -0.441 6.441 12 N -0.354 5.354 13 C 0.009 3.991 14 C -0.157 4.157 15 C 0.026 3.974 16 N -0.390 5.390 17 C -0.382 4.382 18 H 0.093 0.907 19 C -0.267 4.267 20 N -0.619 5.619 21 Si 0.803 3.197 22 H -0.203 1.203 23 H -0.220 1.220 24 H -0.204 1.204 25 H 0.114 0.886 26 H 0.081 0.919 27 H 0.108 0.892 28 H 0.201 0.799 29 H 0.197 0.803 30 H 0.251 0.749 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.095 0.905 34 H 0.091 0.909 35 H 0.040 0.960 36 H 0.042 0.958 37 H 0.208 0.792 38 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 12.555 21.544 15.147 29.176 hybrid contribution -0.431 -0.680 -0.985 1.272 sum 12.124 20.864 14.162 27.980 Atomic orbital electron populations 1.20884 0.88677 1.04072 1.04389 1.19933 0.97847 0.90202 1.00124 1.17496 0.90750 0.80425 1.03784 1.91531 1.80438 1.45141 1.93768 1.21607 0.91220 1.00907 0.98687 1.21196 1.02487 0.88208 0.97841 1.21130 0.90408 0.89369 1.04393 1.98428 1.75235 1.32320 1.96637 1.19411 0.92395 0.93117 1.06375 1.18155 0.78400 0.84100 0.83944 1.90818 1.55378 1.65199 1.32709 1.45917 1.57162 1.23800 1.08520 1.21187 0.96572 0.84438 0.96874 1.21705 1.01312 0.97236 0.95420 1.20669 0.96759 0.93966 0.86025 1.42536 1.68534 1.25074 1.02865 1.19610 1.27664 0.98869 0.92076 0.90726 1.25581 1.03152 1.02448 0.95495 1.69798 1.53164 1.40603 0.98344 0.85203 0.78653 0.79521 0.76337 1.20350 1.21960 1.20404 0.88647 0.91884 0.89173 0.79856 0.80317 0.74882 0.91654 0.91172 0.90530 0.90850 0.96040 0.95822 0.79229 0.93880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.07 9.43 71.23 0.67 -1.39 16 2 C -0.08 -1.41 5.92 -19.56 -0.12 -1.52 16 3 C 0.09 1.37 7.23 22.34 0.16 1.53 16 4 F -0.13 -1.97 16.47 44.97 0.74 -1.23 16 5 C -0.11 -1.00 10.02 22.36 0.22 -0.77 16 6 C -0.08 -0.85 9.81 22.25 0.22 -0.63 16 7 C -0.03 -0.44 6.35 22.60 0.14 -0.30 16 8 Cl -0.06 -1.09 28.04 -2.72 -0.08 -1.17 16 9 C -0.11 -2.23 5.63 -20.07 -0.11 -2.34 16 10 C 0.57 14.45 4.78 86.77 0.41 14.87 16 11 O -0.56 -18.69 17.10 -3.90 -0.07 -18.75 16 12 N -0.70 -15.77 5.55 -466.05 -2.59 -18.36 16 13 C 0.13 3.43 5.67 86.38 0.49 3.92 16 14 C -0.12 -3.43 5.44 30.60 0.17 -3.26 16 15 C 0.15 5.94 6.26 86.38 0.54 6.48 16 16 N -0.75 -37.81 5.60 -343.45 -1.92 -39.74 16 17 C -0.25 -14.08 9.99 84.03 0.84 -13.24 16 18 H 0.07 4.04 7.83 -2.91 -0.02 4.01 16 19 C -0.07 -4.28 5.50 84.86 0.47 -3.81 16 20 N -0.97 -58.98 13.06 21.65 0.28 -58.69 16 21 Si 0.97 46.07 29.55 68.60 2.03 48.10 16 22 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 23 H -0.29 -13.89 7.11 99.48 0.71 -13.19 16 24 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 25 H 0.10 1.36 8.14 -2.38 -0.02 1.34 16 26 H 0.06 1.28 7.09 -2.38 -0.02 1.26 16 27 H 0.09 1.29 7.64 -2.39 -0.02 1.28 16 28 H 0.18 0.51 8.06 -2.91 -0.02 0.48 16 29 H 0.18 0.87 8.06 -2.91 -0.02 0.85 16 30 H 0.41 7.42 8.46 -92.71 -0.78 6.64 16 31 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 34 H 0.07 2.10 8.14 -2.38 -0.02 2.08 16 35 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.38 19.89 7.67 -92.70 -0.71 19.18 16 38 H 0.25 14.89 8.31 -92.71 -0.77 14.11 16 Total: -1.00 -70.82 348.84 2.12 -68.70 By element: Atomic # 1 Polarization: 22.01 SS G_CDS: -0.39 Total: 21.62 kcal Atomic # 6 Polarization: -4.59 SS G_CDS: 4.11 Total: -0.48 kcal Atomic # 7 Polarization: -112.56 SS G_CDS: -4.23 Total: -116.79 kcal Atomic # 8 Polarization: -18.69 SS G_CDS: -0.07 Total: -18.75 kcal Atomic # 9 Polarization: -1.97 SS G_CDS: 0.74 Total: -1.23 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.10 kcal Atomic # 17 Polarization: -1.09 SS G_CDS: -0.08 Total: -1.17 kcal Total: -70.82 2.12 -68.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161413492.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.577 kcal (2) G-P(sol) polarization free energy of solvation -70.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds