Wall clock time and date at job start Tue Mar 31 2020 10:51:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30878 * 1 3 3 Si 1.86799 * 119.99775 * 2 1 4 4 H 1.48500 * 109.46620 * 239.99154 * 3 2 1 5 5 H 1.48492 * 109.47300 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47287 * 119.99666 * 3 2 1 7 7 C 1.39927 * 119.99919 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99690 * 196.44154 * 7 2 1 9 9 C 1.41040 * 119.99878 * 16.44343 * 7 2 1 10 10 C 1.40735 * 120.31012 * 24.99061 * 9 7 2 11 11 C 1.36442 * 119.94956 * 179.97438 * 10 9 7 12 12 C 1.38896 * 120.60536 * 359.97438 * 11 10 9 13 13 C 1.50697 * 119.69399 * 180.02562 * 12 11 10 14 14 F 1.39905 * 109.46902 * 0.02562 * 13 12 11 15 15 F 1.39903 * 109.47212 * 119.99629 * 13 12 11 16 16 F 1.39894 * 109.47573 * 240.00323 * 13 12 11 17 17 C 1.38164 * 120.61971 * 359.78621 * 12 11 10 18 18 C 1.38752 * 120.02778 * 0.47078 * 17 12 11 19 19 N 1.38734 * 120.29431 * 179.78687 * 18 17 12 20 20 C 1.46504 * 119.99931 * 2.03069 * 19 18 17 21 21 C 1.50704 * 115.54532 * 279.69545 * 20 19 18 22 22 N 1.34775 * 120.00156 * 348.65714 * 21 20 19 23 23 O 1.21279 * 119.99670 * 168.65298 * 21 20 19 24 24 C 1.52998 * 117.50296 * 65.36931 * 20 19 18 25 25 C 1.53000 * 60.03106 * 107.49983 * 24 20 19 26 26 H 0.97010 * 119.99942 * 0.02562 * 1 2 3 27 27 H 1.07996 * 120.02241 * 359.97438 * 10 9 7 28 28 H 1.08003 * 119.69735 * 179.97438 * 11 10 9 29 29 H 1.08002 * 119.98830 * 180.23738 * 17 12 11 30 30 H 0.96993 * 119.99957 * 182.01651 * 19 18 17 31 31 H 0.97001 * 119.99897 * 5.13495 * 22 21 20 32 32 H 0.96996 * 119.99934 * 185.13808 * 22 21 20 33 33 H 1.09000 * 117.49794 * 215.00424 * 24 20 19 34 34 H 1.08997 * 117.49470 * 0.02562 * 24 20 19 35 35 H 1.08999 * 117.49642 * 107.50051 * 25 24 20 36 36 H 1.08995 * 117.49917 * 252.51996 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 3.0966 1.6963 -1.2124 5 1 1.2778 2.7464 -0.0006 6 1 3.0964 1.6965 1.2125 7 6 2.0084 -1.2118 0.0005 8 1 3.0552 -1.2308 0.2653 9 6 1.3464 -2.4084 -0.3447 10 6 0.2047 -2.3767 -1.1670 11 6 -0.4297 -3.5388 -1.4968 12 6 0.0409 -4.7589 -1.0285 13 6 -0.6753 -6.0299 -1.4060 14 9 -1.7686 -5.7238 -2.2237 15 9 0.2022 -6.8720 -2.0975 16 9 -1.1244 -6.6738 -0.2481 17 6 1.1624 -4.8186 -0.2238 18 6 1.8246 -3.6524 0.1321 19 7 2.9487 -3.7055 0.9434 20 6 3.4677 -5.0001 1.3920 21 6 2.7490 -5.6177 2.5638 22 7 1.8602 -4.8901 3.2689 23 8 2.9703 -6.7695 2.8722 24 6 4.0239 -5.9461 0.3259 25 6 4.9771 -5.2318 1.2862 26 1 -0.4850 0.8401 -0.0004 27 1 -0.1690 -1.4333 -1.5366 28 1 -1.3057 -3.5098 -2.1277 29 1 1.5217 -5.7731 0.1315 30 1 3.3910 -2.8857 1.2135 31 1 1.6276 -3.9943 2.9783 32 1 1.4533 -5.2621 4.0669 33 1 3.8700 -7.0152 0.4720 34 1 4.0041 -5.6051 -0.7092 35 1 5.4502 -5.8310 2.0641 36 1 5.5836 -4.4210 0.8829 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162549032.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:51:52 Heat of formation + Delta-G solvation = -146.898374 kcal Electronic energy + Delta-G solvation = -26807.775430 eV Core-core repulsion = 22455.992930 eV Total energy + Delta-G solvation = -4351.782500 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 314.098 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.32503 -46.87100 -46.79361 -39.90745 -38.10522 -36.32466 -34.06521 -33.59864 -32.50039 -30.26566 -27.99779 -26.79231 -24.23516 -23.60045 -22.43945 -21.27374 -20.52673 -19.19551 -17.72054 -17.66578 -17.54347 -17.45232 -17.11147 -16.73674 -15.58015 -14.94803 -14.66319 -14.42978 -14.25355 -14.00094 -13.76011 -13.74854 -13.29720 -13.20580 -13.04639 -13.02047 -12.74040 -12.52761 -12.28022 -12.12901 -11.52546 -11.37790 -11.32863 -11.20719 -10.86998 -10.68071 -10.34094 -10.09750 -9.85616 -9.79617 -9.45728 -9.36627 -9.11017 -7.78665 -7.09413 -6.67960 -4.55267 2.33670 2.70079 2.88894 2.90572 2.92046 2.96837 3.61901 3.70580 3.72286 3.92640 4.15773 4.29562 4.89931 5.00484 5.04826 5.07770 5.13104 5.20420 5.54241 5.71781 5.77803 6.05799 6.09930 6.26574 6.29815 6.63556 6.75753 6.90038 7.03023 7.12632 7.24345 7.44214 7.65076 7.72624 7.81651 8.07694 8.33197 8.47562 8.53894 8.63546 8.74591 9.89497 Molecular weight = 314.10amu Principal moments of inertia in cm(-1) A = 0.010020 B = 0.006635 C = 0.004524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2793.751597 B = 4219.056164 C = 6187.920840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.779 5.779 2 C 0.076 3.924 3 Si 0.910 3.090 4 H -0.263 1.263 5 H -0.277 1.277 6 H -0.265 1.265 7 C -0.451 4.451 8 H 0.079 0.921 9 C 0.099 3.901 10 C -0.153 4.153 11 C -0.084 4.084 12 C -0.278 4.278 13 C 0.513 3.487 14 F -0.192 7.192 15 F -0.195 7.195 16 F -0.194 7.194 17 C -0.110 4.110 18 C 0.096 3.904 19 N -0.712 5.712 20 C 0.076 3.924 21 C 0.550 3.450 22 N -0.841 5.841 23 O -0.558 6.558 24 C -0.145 4.145 25 C -0.147 4.147 26 H 0.285 0.715 27 H 0.127 0.873 28 H 0.100 0.900 29 H 0.098 0.902 30 H 0.403 0.597 31 H 0.411 0.589 32 H 0.396 0.604 33 H 0.106 0.894 34 H 0.108 0.892 35 H 0.104 0.896 36 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.851 -2.179 1.546 4.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.403 5.403 2 C -0.144 4.144 3 Si 0.735 3.265 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.189 1.189 7 C -0.480 4.480 8 H 0.097 0.903 9 C 0.094 3.906 10 C -0.173 4.173 11 C -0.103 4.103 12 C -0.282 4.282 13 C 0.459 3.541 14 F -0.174 7.174 15 F -0.176 7.176 16 F -0.176 7.176 17 C -0.134 4.134 18 C -0.001 4.001 19 N -0.349 5.349 20 C -0.018 4.018 21 C 0.333 3.667 22 N -0.403 5.403 23 O -0.437 6.437 24 C -0.184 4.184 25 C -0.185 4.185 26 H 0.097 0.903 27 H 0.145 0.855 28 H 0.118 0.882 29 H 0.116 0.884 30 H 0.241 0.759 31 H 0.241 0.759 32 H 0.226 0.774 33 H 0.124 0.876 34 H 0.127 0.873 35 H 0.122 0.878 36 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 3.867 -2.918 1.623 5.109 hybrid contribution -0.127 1.171 0.263 1.207 sum 3.740 -1.747 1.886 4.539 Atomic orbital electron populations 1.69808 1.07561 1.29875 1.33078 1.25903 0.94790 1.01431 0.92253 0.86314 0.80136 0.80022 0.80074 1.18718 1.20189 1.18938 1.19312 0.97315 0.90976 1.40347 0.90280 1.17371 0.92643 0.90161 0.90415 1.20776 0.98781 0.96768 1.01021 1.20119 0.99007 0.91614 0.99592 1.18810 1.03649 0.90345 1.15354 1.18619 0.76458 0.85333 0.73662 1.93065 1.57022 1.93182 1.74087 1.93123 1.69514 1.74563 1.80421 1.93129 1.90033 1.84153 1.50282 1.19661 0.96262 0.96058 1.01395 1.17575 0.91138 0.93427 0.97976 1.43166 1.31372 1.03540 1.56795 1.20218 0.95176 0.89699 0.96662 1.19994 0.78785 0.85182 0.82740 1.43695 1.45502 1.21060 1.30076 1.90694 1.66054 1.17026 1.69901 1.23303 1.00683 0.98372 0.96037 1.23260 0.89404 1.03129 1.02710 0.90338 0.85490 0.88236 0.88354 0.75931 0.75854 0.77361 0.87585 0.87347 0.87800 0.87586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -17.51 10.90 55.55 0.61 -16.91 16 2 C 0.08 1.63 5.17 -17.33 -0.09 1.54 16 3 Si 0.91 16.24 29.59 -169.99 -5.03 11.21 16 4 H -0.26 -4.75 7.11 56.52 0.40 -4.34 16 5 H -0.28 -4.94 7.11 56.52 0.40 -4.54 16 6 H -0.26 -4.66 7.11 56.52 0.40 -4.26 16 7 C -0.45 -9.81 8.50 -37.89 -0.32 -10.13 16 8 H 0.08 1.60 6.70 -52.49 -0.35 1.25 16 9 C 0.10 2.22 5.59 -106.63 -0.60 1.62 16 10 C -0.15 -3.52 8.63 -39.29 -0.34 -3.86 16 11 C -0.08 -1.83 9.35 -39.99 -0.37 -2.21 16 12 C -0.28 -5.98 5.39 -104.41 -0.56 -6.55 16 13 C 0.51 10.36 3.31 36.00 0.12 10.48 16 14 F -0.19 -3.74 15.94 2.25 0.04 -3.71 16 15 F -0.19 -3.84 17.23 2.25 0.04 -3.80 16 16 F -0.19 -3.95 17.23 2.25 0.04 -3.91 16 17 C -0.11 -2.31 8.44 -39.42 -0.33 -2.64 16 18 C 0.10 1.96 6.58 -83.29 -0.55 1.41 16 19 N -0.71 -12.08 4.59 -46.60 -0.21 -12.29 16 20 C 0.08 1.20 1.75 -132.93 -0.23 0.97 16 21 C 0.55 9.33 7.39 -10.98 -0.08 9.25 16 22 N -0.84 -12.38 8.86 31.22 0.28 -12.10 16 23 O -0.56 -10.88 17.25 5.56 0.10 -10.78 16 24 C -0.15 -2.17 8.50 -26.73 -0.23 -2.39 16 25 C -0.15 -1.91 10.09 -26.69 -0.27 -2.18 16 26 H 0.29 5.91 8.30 -40.82 -0.34 5.57 16 27 H 0.13 3.02 6.14 -52.49 -0.32 2.70 16 28 H 0.10 2.04 7.12 -52.48 -0.37 1.67 16 29 H 0.10 2.04 5.90 -52.49 -0.31 1.73 16 30 H 0.40 6.56 7.07 -40.82 -0.29 6.27 16 31 H 0.41 6.12 7.94 -40.82 -0.32 5.80 16 32 H 0.40 5.04 8.93 -40.82 -0.36 4.68 16 33 H 0.11 1.61 7.86 -51.93 -0.41 1.20 16 34 H 0.11 1.65 8.14 -51.93 -0.42 1.23 16 35 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 36 H 0.11 1.22 8.14 -51.93 -0.42 0.80 16 LS Contribution 322.00 15.07 4.85 4.85 Total: -1.00 -25.21 322.00 -6.30 -31.51 By element: Atomic # 1 Polarization: 23.75 SS G_CDS: -3.14 Total: 20.60 kcal Atomic # 6 Polarization: -0.82 SS G_CDS: -3.86 Total: -4.68 kcal Atomic # 7 Polarization: -41.97 SS G_CDS: 0.67 Total: -41.30 kcal Atomic # 8 Polarization: -10.88 SS G_CDS: 0.10 Total: -10.78 kcal Atomic # 9 Polarization: -11.53 SS G_CDS: 0.11 Total: -11.42 kcal Atomic # 14 Polarization: 16.24 SS G_CDS: -5.03 Total: 11.21 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -25.21 -6.30 -31.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162549032.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.385 kcal (2) G-P(sol) polarization free energy of solvation -25.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds