Wall clock time and date at job start Tue Mar 31 2020 10:51:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30878 * 1 3 3 Si 1.86799 * 119.99775 * 2 1 4 4 H 1.48500 * 109.46620 * 239.99154 * 3 2 1 5 5 H 1.48492 * 109.47300 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47287 * 119.99666 * 3 2 1 7 7 C 1.39927 * 119.99919 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99690 * 196.44154 * 7 2 1 9 9 C 1.41040 * 119.99878 * 16.44343 * 7 2 1 10 10 C 1.40735 * 120.31012 * 24.99061 * 9 7 2 11 11 C 1.36442 * 119.94956 * 179.97438 * 10 9 7 12 12 C 1.38896 * 120.60536 * 359.97438 * 11 10 9 13 13 C 1.50697 * 119.69399 * 180.02562 * 12 11 10 14 14 F 1.39905 * 109.46902 * 0.02562 * 13 12 11 15 15 F 1.39903 * 109.47212 * 119.99629 * 13 12 11 16 16 F 1.39894 * 109.47573 * 240.00323 * 13 12 11 17 17 C 1.38164 * 120.61971 * 359.78621 * 12 11 10 18 18 C 1.38752 * 120.02778 * 0.47078 * 17 12 11 19 19 N 1.38734 * 120.29431 * 179.78687 * 18 17 12 20 20 C 1.46504 * 119.99931 * 2.03069 * 19 18 17 21 21 C 1.50704 * 115.54532 * 279.69545 * 20 19 18 22 22 N 1.34775 * 120.00156 * 348.65714 * 21 20 19 23 23 O 1.21279 * 119.99670 * 168.65298 * 21 20 19 24 24 C 1.52998 * 117.50296 * 65.36931 * 20 19 18 25 25 C 1.53000 * 60.03106 * 107.49983 * 24 20 19 26 26 H 0.97010 * 119.99942 * 0.02562 * 1 2 3 27 27 H 1.07996 * 120.02241 * 359.97438 * 10 9 7 28 28 H 1.08003 * 119.69735 * 179.97438 * 11 10 9 29 29 H 1.08002 * 119.98830 * 180.23738 * 17 12 11 30 30 H 0.96993 * 119.99957 * 182.01651 * 19 18 17 31 31 H 0.97001 * 119.99897 * 5.13495 * 22 21 20 32 32 H 0.96996 * 119.99934 * 185.13808 * 22 21 20 33 33 H 1.09000 * 117.49794 * 215.00424 * 24 20 19 34 34 H 1.08997 * 117.49470 * 0.02562 * 24 20 19 35 35 H 1.08999 * 117.49642 * 107.50051 * 25 24 20 36 36 H 1.08995 * 117.49917 * 252.51996 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 3.0966 1.6963 -1.2124 5 1 1.2778 2.7464 -0.0006 6 1 3.0964 1.6965 1.2125 7 6 2.0084 -1.2118 0.0005 8 1 3.0552 -1.2308 0.2653 9 6 1.3464 -2.4084 -0.3447 10 6 0.2047 -2.3767 -1.1670 11 6 -0.4297 -3.5388 -1.4968 12 6 0.0409 -4.7589 -1.0285 13 6 -0.6753 -6.0299 -1.4060 14 9 -1.7686 -5.7238 -2.2237 15 9 0.2022 -6.8720 -2.0975 16 9 -1.1244 -6.6738 -0.2481 17 6 1.1624 -4.8186 -0.2238 18 6 1.8246 -3.6524 0.1321 19 7 2.9487 -3.7055 0.9434 20 6 3.4677 -5.0001 1.3920 21 6 2.7490 -5.6177 2.5638 22 7 1.8602 -4.8901 3.2689 23 8 2.9703 -6.7695 2.8722 24 6 4.0239 -5.9461 0.3259 25 6 4.9771 -5.2318 1.2862 26 1 -0.4850 0.8401 -0.0004 27 1 -0.1690 -1.4333 -1.5366 28 1 -1.3057 -3.5098 -2.1277 29 1 1.5217 -5.7731 0.1315 30 1 3.3910 -2.8857 1.2135 31 1 1.6276 -3.9943 2.9783 32 1 1.4533 -5.2621 4.0669 33 1 3.8700 -7.0152 0.4720 34 1 4.0041 -5.6051 -0.7092 35 1 5.4502 -5.8310 2.0641 36 1 5.5836 -4.4210 0.8829 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162549032.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:51:52 Heat of formation + Delta-G solvation = -161.416903 kcal Electronic energy + Delta-G solvation = -26808.405001 eV Core-core repulsion = 22455.992930 eV Total energy + Delta-G solvation = -4352.412071 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 314.098 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.94164 -48.47634 -48.41358 -41.24725 -39.68546 -37.66945 -35.70825 -34.92314 -33.93590 -31.91902 -29.57527 -28.43452 -25.65553 -25.13221 -23.61601 -22.87225 -22.10997 -20.53837 -19.30453 -19.28512 -19.13058 -19.06667 -18.46916 -18.03796 -17.14623 -16.45437 -16.05915 -15.73847 -15.70819 -15.42402 -15.36183 -15.30648 -14.90754 -14.72578 -14.63270 -14.61190 -14.31469 -13.99047 -13.85664 -13.74815 -13.03083 -12.95534 -12.69657 -12.43047 -12.19188 -12.14739 -11.79412 -11.60640 -11.45029 -11.17886 -11.06416 -10.66546 -10.54806 -9.49461 -8.70853 -8.25596 -6.21671 0.67084 1.21274 1.41581 1.46165 1.52689 1.56469 1.99257 2.21592 2.44619 2.62069 2.66998 2.93799 3.26044 3.39804 3.50264 3.79448 3.89564 3.94599 3.96869 4.40125 4.53543 4.63633 4.68444 4.93871 5.01509 5.11982 5.19118 5.27390 5.45159 5.56760 5.77333 5.87588 6.03039 6.14545 6.32421 6.46322 6.71817 6.85839 7.00845 7.20894 7.31041 8.29912 Molecular weight = 314.10amu Principal moments of inertia in cm(-1) A = 0.010020 B = 0.006635 C = 0.004524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2793.751597 B = 4219.056164 C = 6187.920840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.809 5.809 2 C 0.041 3.959 3 Si 0.977 3.023 4 H -0.264 1.264 5 H -0.278 1.278 6 H -0.256 1.256 7 C -0.464 4.464 8 H 0.093 0.907 9 C 0.077 3.923 10 C -0.174 4.174 11 C -0.091 4.091 12 C -0.288 4.288 13 C 0.518 3.482 14 F -0.188 7.188 15 F -0.191 7.191 16 F -0.195 7.195 17 C -0.119 4.119 18 C 0.111 3.889 19 N -0.699 5.699 20 C 0.057 3.943 21 C 0.545 3.455 22 N -0.831 5.831 23 O -0.587 6.587 24 C -0.151 4.151 25 C -0.115 4.115 26 H 0.290 0.710 27 H 0.113 0.887 28 H 0.106 0.894 29 H 0.099 0.901 30 H 0.408 0.592 31 H 0.411 0.589 32 H 0.406 0.594 33 H 0.101 0.899 34 H 0.105 0.895 35 H 0.115 0.885 36 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.391 -1.625 2.075 6.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C -0.177 4.177 3 Si 0.799 3.201 4 H -0.189 1.189 5 H -0.203 1.203 6 H -0.180 1.180 7 C -0.492 4.492 8 H 0.111 0.889 9 C 0.072 3.928 10 C -0.195 4.195 11 C -0.111 4.111 12 C -0.291 4.291 13 C 0.464 3.536 14 F -0.169 7.169 15 F -0.173 7.173 16 F -0.176 7.176 17 C -0.143 4.143 18 C 0.012 3.988 19 N -0.335 5.335 20 C -0.036 4.036 21 C 0.329 3.671 22 N -0.393 5.393 23 O -0.468 6.468 24 C -0.190 4.190 25 C -0.153 4.153 26 H 0.101 0.899 27 H 0.131 0.869 28 H 0.124 0.876 29 H 0.117 0.883 30 H 0.247 0.753 31 H 0.242 0.758 32 H 0.237 0.763 33 H 0.119 0.881 34 H 0.123 0.877 35 H 0.134 0.866 36 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 5.413 -2.364 2.178 6.295 hybrid contribution -0.623 0.969 0.122 1.159 sum 4.791 -1.394 2.300 5.494 Atomic orbital electron populations 1.69875 1.08972 1.30870 1.33665 1.26657 0.95302 1.04263 0.91454 0.85300 0.78724 0.76038 0.80076 1.18884 1.20282 1.17950 1.19605 0.97974 0.91192 1.40450 0.88887 1.17626 0.92918 0.91331 0.90891 1.20743 0.99938 0.96516 1.02273 1.20192 0.99323 0.91635 0.99929 1.18976 1.04000 0.90660 1.15454 1.18434 0.76496 0.84974 0.73711 1.93071 1.56777 1.93155 1.73927 1.93126 1.69448 1.74371 1.80313 1.93126 1.90028 1.84094 1.50384 1.19686 0.96494 0.96252 1.01889 1.17560 0.91482 0.92533 0.97256 1.43067 1.30272 1.04477 1.55709 1.20329 0.97249 0.89239 0.96830 1.20201 0.78920 0.84913 0.83039 1.43637 1.44756 1.20795 1.30112 1.90681 1.67141 1.18129 1.70856 1.23282 1.01784 0.98019 0.95884 1.23392 0.87577 1.02763 1.01538 0.89943 0.86933 0.87576 0.88264 0.75329 0.75811 0.76282 0.88086 0.87711 0.86635 0.85431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -36.49 10.90 21.83 0.24 -36.25 16 2 C 0.04 1.71 5.17 85.24 0.44 2.15 16 3 Si 0.98 32.27 29.59 68.60 2.03 34.30 16 4 H -0.26 -8.75 7.11 99.48 0.71 -8.05 16 5 H -0.28 -9.14 7.11 99.48 0.71 -8.43 16 6 H -0.26 -8.02 7.11 99.48 0.71 -7.31 16 7 C -0.46 -19.79 8.50 23.37 0.20 -19.59 16 8 H 0.09 3.59 6.70 -2.91 -0.02 3.57 16 9 C 0.08 3.46 5.59 -21.17 -0.12 3.34 16 10 C -0.17 -8.14 8.63 22.46 0.19 -7.94 16 11 C -0.09 -4.03 9.35 22.01 0.21 -3.83 16 12 C -0.29 -12.32 5.39 -19.73 -0.11 -12.42 16 13 C 0.52 20.62 3.31 71.23 0.24 20.85 16 14 F -0.19 -7.21 15.94 44.97 0.72 -6.49 16 15 F -0.19 -7.39 17.23 44.97 0.77 -6.61 16 16 F -0.19 -7.78 17.23 44.97 0.77 -7.00 16 17 C -0.12 -4.93 8.44 22.38 0.19 -4.74 16 18 C 0.11 4.43 6.58 38.99 0.26 4.69 16 19 N -0.70 -22.59 4.59 -301.35 -1.38 -23.97 16 20 C 0.06 1.69 1.75 2.88 0.01 1.69 16 21 C 0.55 17.80 7.39 87.66 0.65 18.45 16 22 N -0.83 -23.49 8.86 -173.53 -1.54 -25.02 16 23 O -0.59 -22.27 17.25 -3.03 -0.05 -22.32 16 24 C -0.15 -4.25 8.50 30.59 0.26 -3.99 16 25 C -0.11 -2.64 10.09 30.62 0.31 -2.33 16 26 H 0.29 12.03 8.30 -92.70 -0.77 11.26 16 27 H 0.11 5.52 6.14 -2.91 -0.02 5.50 16 28 H 0.11 4.41 7.12 -2.91 -0.02 4.39 16 29 H 0.10 4.06 5.90 -2.91 -0.02 4.05 16 30 H 0.41 12.42 7.07 -92.71 -0.66 11.76 16 31 H 0.41 11.77 7.94 -92.71 -0.74 11.04 16 32 H 0.41 9.87 8.93 -92.71 -0.83 9.04 16 33 H 0.10 2.96 7.86 -2.39 -0.02 2.94 16 34 H 0.10 3.04 8.14 -2.39 -0.02 3.02 16 35 H 0.12 2.46 8.14 -2.39 -0.02 2.44 16 36 H 0.13 2.43 8.14 -2.39 -0.02 2.41 16 Total: -1.00 -52.71 322.00 3.26 -49.45 By element: Atomic # 1 Polarization: 48.64 SS G_CDS: -1.02 Total: 47.62 kcal Atomic # 6 Polarization: -6.41 SS G_CDS: 2.72 Total: -3.69 kcal Atomic # 7 Polarization: -82.56 SS G_CDS: -2.68 Total: -85.25 kcal Atomic # 8 Polarization: -22.27 SS G_CDS: -0.05 Total: -22.32 kcal Atomic # 9 Polarization: -22.37 SS G_CDS: 2.27 Total: -20.11 kcal Atomic # 14 Polarization: 32.27 SS G_CDS: 2.03 Total: 34.30 kcal Total: -52.71 3.26 -49.45 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162549032.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.967 kcal (2) G-P(sol) polarization free energy of solvation -52.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds