Wall clock time and date at job start Tue Mar 31 2020 10:53:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86802 * 119.99816 * 2 1 4 4 H 1.48506 * 109.46868 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47072 * 299.99433 * 3 2 1 6 6 H 1.48497 * 109.47321 * 60.00176 * 3 2 1 7 7 C 1.38811 * 120.00067 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00075 * 180.02562 * 7 2 1 9 9 N 1.36930 * 120.00052 * 359.97438 * 7 2 1 10 10 C 1.46506 * 120.00034 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47033 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47273 * 180.02562 * 11 10 9 13 13 N 1.46499 * 109.47555 * 179.97438 * 12 11 10 14 14 C 1.34777 * 120.00199 * 180.02562 * 13 12 11 15 15 O 1.21283 * 119.99750 * 359.97438 * 14 13 12 16 16 C 1.50702 * 119.99928 * 180.27479 * 14 13 12 17 17 C 1.50700 * 109.46869 * 179.72354 * 16 14 13 18 18 C 1.38233 * 120.00272 * 264.71901 * 17 16 14 19 19 C 1.38221 * 120.04947 * 179.77163 * 18 17 16 20 20 C 1.38267 * 120.05904 * 0.50792 * 19 18 17 21 21 C 1.38276 * 120.00779 * 359.74929 * 20 19 18 22 22 Cl 1.73604 * 120.02209 * 179.97438 * 21 20 19 23 23 C 1.38395 * 120.00802 * 84.99957 * 17 16 14 24 24 F 1.35104 * 120.03335 * 359.97438 * 23 17 16 25 25 H 0.96998 * 120.00171 * 359.97438 * 1 2 3 26 26 H 0.97005 * 120.00160 * 0.02562 * 9 7 2 27 27 H 1.08992 * 109.47032 * 60.00622 * 10 9 7 28 28 H 1.08997 * 109.47284 * 300.00186 * 10 9 7 29 29 H 1.08998 * 109.47307 * 59.99732 * 11 10 9 30 30 H 1.09005 * 109.46653 * 299.99667 * 11 10 9 31 31 H 1.08998 * 109.47382 * 59.99521 * 12 11 10 32 32 H 1.09002 * 109.47216 * 299.99958 * 12 11 10 33 33 H 0.97000 * 119.99484 * 359.97438 * 13 12 11 34 34 H 1.09004 * 109.46965 * 299.72211 * 16 14 13 35 35 H 1.08994 * 109.46990 * 59.72065 * 16 14 13 36 36 H 1.08008 * 119.97918 * 0.02562 * 18 17 16 37 37 H 1.08004 * 119.97633 * 180.25672 * 19 18 17 38 38 H 1.07996 * 119.99489 * 179.76765 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3964 -1.2126 6 1 1.8914 2.3965 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 2.0582 -3.6568 -0.0005 11 6 1.0639 -4.8197 -0.0012 12 6 1.8289 -6.1447 -0.0005 13 7 0.8769 -7.2583 -0.0005 14 6 1.3262 -8.5289 0.0005 15 8 2.5186 -8.7505 0.0010 16 6 0.3469 -9.6744 -0.0058 17 6 1.1005 -10.9794 -0.0100 18 6 1.3526 -11.6282 -1.2044 19 6 2.0478 -12.8228 -1.2098 20 6 2.4831 -13.3763 -0.0199 21 6 2.2276 -12.7321 1.1767 22 17 2.7734 -13.4269 2.6711 23 6 1.5352 -11.5316 1.1822 24 9 1.2849 -10.9009 2.3505 25 1 -0.4850 0.8400 0.0004 26 1 0.3556 -2.3880 -0.0005 27 1 2.6847 -3.7145 0.8894 28 1 2.6848 -3.7145 -0.8905 29 1 0.4376 -4.7617 -0.8913 30 1 0.4370 -4.7621 0.8887 31 1 2.4550 -6.2024 0.8898 32 1 2.4562 -6.2025 -0.8901 33 1 -0.0767 -7.0810 -0.0005 34 1 -0.2811 -9.6203 0.8836 35 1 -0.2784 -9.6129 -0.8964 36 1 1.0096 -11.1992 -2.1344 37 1 2.2477 -13.3266 -2.1440 38 1 3.0229 -14.3116 -0.0250 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167306608.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:27 Heat of formation + Delta-G solvation = -62.642767 kcal Electronic energy + Delta-G solvation = -22249.376867 eV Core-core repulsion = 18453.044644 eV Total energy + Delta-G solvation = -3796.332223 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.094 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.27173 -40.21261 -39.10866 -36.94822 -36.06821 -34.37011 -33.34716 -31.97437 -30.83852 -29.79354 -28.08038 -25.15812 -23.28086 -22.99115 -22.18052 -21.24817 -20.31548 -18.12555 -17.41681 -17.20706 -16.89126 -16.69736 -15.94878 -15.79170 -15.71935 -14.92836 -14.59804 -14.59732 -13.92716 -13.83749 -13.71063 -13.31271 -13.29017 -13.01999 -12.96711 -12.45115 -12.02243 -11.87779 -11.82831 -11.66183 -11.30513 -10.98350 -10.94387 -10.79612 -10.64481 -10.13027 -9.98888 -9.72740 -9.25450 -9.11084 -9.07284 -8.89891 -6.94977 -5.78719 -3.07626 0.55769 0.61689 1.61864 2.50235 2.85738 3.24570 3.42821 3.48657 3.50895 3.69205 3.99617 4.30808 4.55454 4.57838 4.64171 4.67986 4.81929 4.99237 5.11384 5.21609 5.28862 5.42864 5.52019 5.56174 5.60380 5.67892 5.83806 5.95743 6.04083 6.16713 6.24463 6.30026 6.40221 6.77031 6.81257 7.38972 7.69562 8.09963 8.40261 9.51494 10.08370 10.43072 11.44360 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.032903 B = 0.001901 C = 0.001862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.792193 B =14728.483039 C =15036.129039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.016 4.016 3 Si 0.908 3.092 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.239 4.239 8 H 0.072 0.928 9 N -0.734 5.734 10 C 0.156 3.844 11 C -0.137 4.137 12 C 0.122 3.878 13 N -0.726 5.726 14 C 0.512 3.488 15 O -0.534 6.534 16 C -0.105 4.105 17 C -0.087 4.087 18 C -0.074 4.074 19 C -0.117 4.117 20 C -0.085 4.085 21 C -0.074 4.074 22 Cl -0.051 7.051 23 C 0.125 3.875 24 F -0.123 7.123 25 H 0.255 0.745 26 H 0.384 0.616 27 H 0.022 0.978 28 H 0.022 0.978 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.402 0.598 34 H 0.109 0.891 35 H 0.113 0.887 36 H 0.139 0.861 37 H 0.140 0.860 38 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.933 -31.410 -1.521 31.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.212 4.212 3 Si 0.740 3.260 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.370 4.370 8 H 0.090 0.910 9 N -0.378 5.378 10 C 0.028 3.972 11 C -0.176 4.176 12 C -0.001 4.001 13 N -0.378 5.378 14 C 0.298 3.702 15 O -0.410 6.410 16 C -0.145 4.145 17 C -0.088 4.088 18 C -0.093 4.093 19 C -0.135 4.135 20 C -0.103 4.103 21 C -0.101 4.101 22 Cl -0.022 7.022 23 C 0.105 3.895 24 F -0.102 7.102 25 H 0.064 0.936 26 H 0.217 0.783 27 H 0.040 0.960 28 H 0.040 0.960 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.236 0.764 34 H 0.127 0.873 35 H 0.131 0.869 36 H 0.157 0.843 37 H 0.158 0.842 38 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 0.132 -31.465 -1.330 31.493 hybrid contribution -0.329 1.148 0.402 1.260 sum -0.197 -30.317 -0.928 30.332 Atomic orbital electron populations 1.69667 1.05132 1.25581 1.57938 1.24762 0.95579 0.97791 1.03027 0.86089 0.78817 0.83954 0.77187 1.20498 1.21841 1.21828 1.19293 0.91146 0.84100 1.42487 0.91028 1.42347 1.05870 1.00002 1.89605 1.20522 0.93275 0.85189 0.98230 1.21944 0.99578 0.93294 1.02741 1.21374 0.91722 0.84515 1.02512 1.46047 1.10842 1.05643 1.75232 1.20332 0.89540 0.83785 0.76576 1.90743 1.16679 1.84683 1.48927 1.20634 0.97773 0.89756 1.06309 1.19298 1.01169 0.96562 0.91796 1.21041 0.96681 0.94511 0.97018 1.21147 0.98319 0.96011 0.98012 1.20991 0.99156 1.00206 0.89971 1.20957 1.03985 0.95630 0.89552 1.98393 1.88416 1.83534 1.31903 1.17188 0.99349 0.91020 0.81957 1.91543 1.91903 1.81254 1.45453 0.93550 0.78302 0.96034 0.96049 0.91259 0.91260 0.91337 0.91306 0.76416 0.87290 0.86855 0.84290 0.84188 0.83974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.29 13.06 55.49 0.72 -27.57 16 2 C -0.02 -0.46 5.50 -17.43 -0.10 -0.55 16 3 Si 0.91 22.52 29.55 -169.99 -5.02 17.50 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 6 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 7 C -0.24 -6.77 9.99 -15.06 -0.15 -6.92 16 8 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16 9 N -0.73 -18.66 5.60 -59.91 -0.34 -19.00 16 10 C 0.16 3.10 6.26 -4.04 -0.03 3.08 16 11 C -0.14 -2.06 5.44 -26.73 -0.15 -2.20 16 12 C 0.12 1.64 5.67 -4.04 -0.02 1.62 16 13 N -0.73 -7.89 5.56 -60.29 -0.33 -8.22 16 14 C 0.51 6.07 7.82 -10.98 -0.09 5.98 16 15 O -0.53 -8.63 16.03 5.55 0.09 -8.54 16 16 C -0.10 -0.83 5.61 -29.03 -0.16 -0.99 16 17 C -0.09 -0.80 4.38 -104.57 -0.46 -1.26 16 18 C -0.07 -0.54 9.68 -39.59 -0.38 -0.92 16 19 C -0.12 -0.73 10.04 -39.58 -0.40 -1.13 16 20 C -0.08 -0.62 9.83 -39.56 -0.39 -1.01 16 21 C -0.07 -0.72 6.33 -39.44 -0.25 -0.97 16 22 Cl -0.05 -0.50 28.62 -51.86 -1.48 -1.98 16 23 C 0.13 1.36 7.22 -39.39 -0.28 1.08 16 24 F -0.12 -1.51 16.14 2.25 0.04 -1.48 16 25 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 26 H 0.38 10.11 7.67 -40.82 -0.31 9.79 16 27 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 33 H 0.40 3.22 8.47 -40.82 -0.35 2.87 16 34 H 0.11 0.73 7.79 -51.93 -0.40 0.32 16 35 H 0.11 0.53 8.05 -51.93 -0.42 0.11 16 36 H 0.14 0.68 8.06 -52.48 -0.42 0.26 16 37 H 0.14 0.48 8.06 -52.48 -0.42 0.06 16 38 H 0.14 0.71 8.06 -52.49 -0.42 0.29 16 LS Contribution 350.80 15.07 5.29 5.29 Total: -1.00 -34.79 350.80 -8.72 -43.52 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -4.83 Total: 4.69 kcal Atomic # 6 Polarization: -1.35 SS G_CDS: -2.85 Total: -4.20 kcal Atomic # 7 Polarization: -54.84 SS G_CDS: 0.05 Total: -54.79 kcal Atomic # 8 Polarization: -8.63 SS G_CDS: 0.09 Total: -8.54 kcal Atomic # 9 Polarization: -1.51 SS G_CDS: 0.04 Total: -1.48 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.50 kcal Atomic # 17 Polarization: -0.50 SS G_CDS: -1.48 Total: -1.98 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -34.79 -8.72 -43.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167306608.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.128 kcal (2) G-P(sol) polarization free energy of solvation -34.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds