Wall clock time and date at job start Tue Mar 31 2020 10:53:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86802 * 119.99816 * 2 1 4 4 H 1.48506 * 109.46868 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47072 * 299.99433 * 3 2 1 6 6 H 1.48497 * 109.47321 * 60.00176 * 3 2 1 7 7 C 1.38811 * 120.00067 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00075 * 180.02562 * 7 2 1 9 9 N 1.36930 * 120.00052 * 359.97438 * 7 2 1 10 10 C 1.46506 * 120.00034 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47033 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47273 * 180.02562 * 11 10 9 13 13 N 1.46499 * 109.47555 * 179.97438 * 12 11 10 14 14 C 1.34777 * 120.00199 * 180.02562 * 13 12 11 15 15 O 1.21283 * 119.99750 * 359.97438 * 14 13 12 16 16 C 1.50702 * 119.99928 * 180.27479 * 14 13 12 17 17 C 1.50700 * 109.46869 * 179.72354 * 16 14 13 18 18 C 1.38233 * 120.00272 * 264.71901 * 17 16 14 19 19 C 1.38221 * 120.04947 * 179.77163 * 18 17 16 20 20 C 1.38267 * 120.05904 * 0.50792 * 19 18 17 21 21 C 1.38276 * 120.00779 * 359.74929 * 20 19 18 22 22 Cl 1.73604 * 120.02209 * 179.97438 * 21 20 19 23 23 C 1.38395 * 120.00802 * 84.99957 * 17 16 14 24 24 F 1.35104 * 120.03335 * 359.97438 * 23 17 16 25 25 H 0.96998 * 120.00171 * 359.97438 * 1 2 3 26 26 H 0.97005 * 120.00160 * 0.02562 * 9 7 2 27 27 H 1.08992 * 109.47032 * 60.00622 * 10 9 7 28 28 H 1.08997 * 109.47284 * 300.00186 * 10 9 7 29 29 H 1.08998 * 109.47307 * 59.99732 * 11 10 9 30 30 H 1.09005 * 109.46653 * 299.99667 * 11 10 9 31 31 H 1.08998 * 109.47382 * 59.99521 * 12 11 10 32 32 H 1.09002 * 109.47216 * 299.99958 * 12 11 10 33 33 H 0.97000 * 119.99484 * 359.97438 * 13 12 11 34 34 H 1.09004 * 109.46965 * 299.72211 * 16 14 13 35 35 H 1.08994 * 109.46990 * 59.72065 * 16 14 13 36 36 H 1.08008 * 119.97918 * 0.02562 * 18 17 16 37 37 H 1.08004 * 119.97633 * 180.25672 * 19 18 17 38 38 H 1.07996 * 119.99489 * 179.76765 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3964 -1.2126 6 1 1.8914 2.3965 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 2.0582 -3.6568 -0.0005 11 6 1.0639 -4.8197 -0.0012 12 6 1.8289 -6.1447 -0.0005 13 7 0.8769 -7.2583 -0.0005 14 6 1.3262 -8.5289 0.0005 15 8 2.5186 -8.7505 0.0010 16 6 0.3469 -9.6744 -0.0058 17 6 1.1005 -10.9794 -0.0100 18 6 1.3526 -11.6282 -1.2044 19 6 2.0478 -12.8228 -1.2098 20 6 2.4831 -13.3763 -0.0199 21 6 2.2276 -12.7321 1.1767 22 17 2.7734 -13.4269 2.6711 23 6 1.5352 -11.5316 1.1822 24 9 1.2849 -10.9009 2.3505 25 1 -0.4850 0.8400 0.0004 26 1 0.3556 -2.3880 -0.0005 27 1 2.6847 -3.7145 0.8894 28 1 2.6848 -3.7145 -0.8905 29 1 0.4376 -4.7617 -0.8913 30 1 0.4370 -4.7621 0.8887 31 1 2.4550 -6.2024 0.8898 32 1 2.4562 -6.2025 -0.8901 33 1 -0.0767 -7.0810 -0.0005 34 1 -0.2811 -9.6203 0.8836 35 1 -0.2784 -9.6129 -0.8964 36 1 1.0096 -11.1992 -2.1344 37 1 2.2477 -13.3266 -2.1440 38 1 3.0229 -14.3116 -0.0250 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167306608.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:26 Heat of formation + Delta-G solvation = -85.702758 kcal Electronic energy + Delta-G solvation = -22250.376823 eV Core-core repulsion = 18453.044644 eV Total energy + Delta-G solvation = -3797.332179 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.094 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -50.06313 -41.03283 -39.83410 -37.67971 -37.46594 -35.90361 -34.09974 -33.62406 -31.44058 -31.35392 -28.94146 -26.76293 -24.52705 -23.86134 -23.11395 -22.58270 -21.31070 -19.22126 -18.78087 -18.05928 -17.88079 -17.47895 -16.86647 -16.81626 -16.74362 -16.35762 -15.71476 -15.47231 -15.31998 -15.16272 -14.56607 -14.49229 -14.42173 -14.01852 -13.98899 -13.36462 -13.29804 -12.85726 -12.68867 -12.58309 -12.49558 -12.43637 -12.40656 -12.05438 -12.04820 -11.97030 -11.80035 -11.04403 -10.96792 -10.11965 -9.87448 -9.71716 -9.03042 -7.97812 -5.26941 -0.03841 0.00881 0.95094 1.47405 1.47949 1.58350 1.60823 2.10399 2.51127 2.57326 3.06031 3.36107 3.38267 3.76229 3.80621 3.88931 4.01929 4.07646 4.17574 4.27939 4.29499 4.46027 4.50884 4.66547 4.72452 4.73218 4.86589 4.91472 4.94763 5.16538 5.27633 5.29337 5.30933 5.41987 5.48203 5.70708 6.25254 6.54014 7.23038 7.31647 8.06109 8.30180 9.25824 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.032903 B = 0.001901 C = 0.001862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.792193 B =14728.483039 C =15036.129039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.076 4.076 3 Si 0.975 3.025 4 H -0.268 1.268 5 H -0.291 1.291 6 H -0.292 1.292 7 C -0.249 4.249 8 H 0.074 0.926 9 N -0.747 5.747 10 C 0.151 3.849 11 C -0.117 4.117 12 C 0.134 3.866 13 N -0.716 5.716 14 C 0.510 3.490 15 O -0.582 6.582 16 C -0.097 4.097 17 C -0.101 4.101 18 C -0.076 4.076 19 C -0.109 4.109 20 C -0.086 4.086 21 C -0.092 4.092 22 Cl -0.062 7.062 23 C 0.091 3.909 24 F -0.142 7.142 25 H 0.252 0.748 26 H 0.376 0.624 27 H 0.019 0.981 28 H 0.023 0.977 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.055 0.945 32 H 0.063 0.937 33 H 0.418 0.582 34 H 0.120 0.880 35 H 0.153 0.847 36 H 0.167 0.833 37 H 0.175 0.825 38 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.128 -32.455 -3.046 32.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.268 4.268 3 Si 0.804 3.196 4 H -0.192 1.192 5 H -0.218 1.218 6 H -0.219 1.219 7 C -0.380 4.380 8 H 0.092 0.908 9 N -0.390 5.390 10 C 0.024 3.976 11 C -0.156 4.156 12 C 0.009 3.991 13 N -0.369 5.369 14 C 0.298 3.702 15 O -0.462 6.462 16 C -0.137 4.137 17 C -0.103 4.103 18 C -0.094 4.094 19 C -0.127 4.127 20 C -0.105 4.105 21 C -0.119 4.119 22 Cl -0.034 7.034 23 C 0.071 3.929 24 F -0.120 7.120 25 H 0.061 0.939 26 H 0.208 0.792 27 H 0.037 0.963 28 H 0.041 0.959 29 H 0.096 0.904 30 H 0.091 0.909 31 H 0.073 0.927 32 H 0.082 0.918 33 H 0.255 0.745 34 H 0.138 0.862 35 H 0.171 0.829 36 H 0.184 0.816 37 H 0.192 0.808 38 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -0.073 -32.539 -2.854 32.664 hybrid contribution -0.229 1.386 0.833 1.633 sum -0.302 -31.153 -2.021 31.220 Atomic orbital electron populations 1.69807 1.06521 1.26143 1.59378 1.25595 0.96516 1.01171 1.03559 0.85053 0.78162 0.79628 0.76788 1.19200 1.21781 1.21893 1.19674 0.91546 0.85426 1.41389 0.90777 1.42548 1.05759 1.01150 1.89522 1.20686 0.94154 0.84860 0.97889 1.21695 0.98426 0.92073 1.03366 1.21057 0.91785 0.84593 1.01675 1.45903 1.11345 1.04926 1.74697 1.21025 0.89559 0.84524 0.75125 1.90723 1.18970 1.85354 1.51136 1.20698 0.96916 0.87310 1.08736 1.19573 1.01598 0.97215 0.91905 1.21472 0.96015 0.94615 0.97271 1.21608 0.96660 0.95534 0.98871 1.21354 0.98811 1.00818 0.89485 1.21220 1.04750 0.95935 0.90035 1.98379 1.88557 1.83590 1.32827 1.17606 1.01161 0.92001 0.82122 1.91483 1.92291 1.81710 1.46530 0.93869 0.79173 0.96314 0.95936 0.90351 0.90868 0.92676 0.91834 0.74494 0.86155 0.82940 0.81555 0.80758 0.81884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.91 13.06 21.65 0.28 -58.63 16 2 C -0.08 -4.39 5.50 84.86 0.47 -3.92 16 3 Si 0.97 46.23 29.55 68.60 2.03 48.26 16 4 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 5 H -0.29 -13.67 7.11 99.48 0.71 -12.97 16 6 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 7 C -0.25 -14.03 9.99 84.03 0.84 -13.19 16 8 H 0.07 4.05 7.83 -2.91 -0.02 4.03 16 9 N -0.75 -37.93 5.60 -343.46 -1.92 -39.86 16 10 C 0.15 5.95 6.26 86.38 0.54 6.49 16 11 C -0.12 -3.39 5.44 30.59 0.17 -3.22 16 12 C 0.13 3.45 5.67 86.38 0.49 3.94 16 13 N -0.72 -14.36 5.56 -463.06 -2.57 -16.93 16 14 C 0.51 11.39 7.82 87.66 0.69 12.08 16 15 O -0.58 -18.67 16.03 -3.04 -0.05 -18.72 16 16 C -0.10 -1.32 5.61 29.10 0.16 -1.16 16 17 C -0.10 -1.72 4.38 -19.83 -0.09 -1.81 16 18 C -0.08 -0.88 9.68 22.26 0.22 -0.67 16 19 C -0.11 -1.04 10.04 22.27 0.22 -0.82 16 20 C -0.09 -1.11 9.83 22.29 0.22 -0.89 16 21 C -0.09 -1.77 6.33 22.36 0.14 -1.62 16 22 Cl -0.06 -1.23 28.62 -2.72 -0.08 -1.31 16 23 C 0.09 1.98 7.22 22.39 0.16 2.14 16 24 F -0.14 -3.60 16.14 44.97 0.73 -2.88 16 25 H 0.25 14.80 8.31 -92.71 -0.77 14.03 16 26 H 0.38 19.90 7.67 -92.70 -0.71 19.19 16 27 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 30 H 0.07 2.08 8.14 -2.38 -0.02 2.06 16 31 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.42 5.66 8.47 -92.71 -0.79 4.87 16 34 H 0.12 1.38 7.79 -2.38 -0.02 1.36 16 35 H 0.15 0.82 8.05 -2.39 -0.02 0.80 16 36 H 0.17 0.94 8.06 -2.91 -0.02 0.92 16 37 H 0.18 0.43 8.06 -2.91 -0.02 0.41 16 38 H 0.16 1.29 8.06 -2.91 -0.02 1.27 16 Total: -1.00 -76.34 350.80 2.25 -74.10 By element: Atomic # 1 Polarization: 19.01 SS G_CDS: -0.39 Total: 18.62 kcal Atomic # 6 Polarization: -6.88 SS G_CDS: 4.23 Total: -2.66 kcal Atomic # 7 Polarization: -111.20 SS G_CDS: -4.21 Total: -115.41 kcal Atomic # 8 Polarization: -18.67 SS G_CDS: -0.05 Total: -18.72 kcal Atomic # 9 Polarization: -3.60 SS G_CDS: 0.73 Total: -2.88 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 2.03 Total: 48.26 kcal Atomic # 17 Polarization: -1.23 SS G_CDS: -0.08 Total: -1.31 kcal Total: -76.34 2.25 -74.10 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167306608.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.605 kcal (2) G-P(sol) polarization free energy of solvation -76.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds