Wall clock time and date at job start Tue Mar 31 2020 10:35:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.39922 * 120.00034 * 2 1 4 4 C 1.38920 * 120.51764 * 359.72048 * 3 2 1 5 5 C 1.38794 * 118.44095 * 179.73671 * 4 3 2 6 6 N 1.48016 * 120.31070 * 180.24412 * 5 4 3 7 7 O 1.31705 * 119.99803 * 180.30339 * 6 5 4 8 8 O 1.31698 * 120.00010 * 0.30123 * 6 5 4 9 9 C 1.38068 * 119.37696 * 0.54035 * 5 4 3 10 10 N 1.32000 * 121.00215 * 359.72743 * 9 5 4 11 11 C 1.32280 * 121.69825 * 359.97438 * 10 9 5 12 12 N 1.39364 * 119.74243 * 179.97438 * 11 10 9 13 13 C 1.38282 * 120.00423 * 357.87260 * 12 11 10 14 14 C 1.39482 * 119.99525 * 299.26551 * 13 12 11 15 15 H 1.08000 * 119.99847 * 150.95754 * 14 13 12 16 16 C 1.41833 * 120.00160 * 330.95379 * 14 13 12 17 17 N 1.29794 * 119.99936 * 3.06005 * 16 14 13 18 18 Si 1.86794 * 120.00197 * 183.05548 * 16 14 13 19 19 H 1.48502 * 109.47340 * 0.02562 * 18 16 14 20 20 H 1.48506 * 109.47331 * 120.00188 * 18 16 14 21 21 H 1.48496 * 109.47375 * 240.00020 * 18 16 14 22 22 C 1.40721 * 120.00445 * 119.26494 * 13 12 11 23 23 C 1.43202 * 119.99721 * 185.17575 * 22 13 12 24 24 N 7.56081 * 171.76990 * 109.50349 * 2 1 3 25 25 C 1.43197 * 119.99824 * 5.16943 * 22 13 12 26 26 N 5.03838 * 137.45366 * 121.44740 * 2 1 3 27 27 H 1.08999 * 109.46797 * 59.99838 * 1 2 3 28 28 H 1.08996 * 109.46693 * 300.00304 * 1 2 3 29 29 H 1.08998 * 109.46732 * 180.02562 * 1 2 3 30 30 H 0.96999 * 119.99858 * 179.97438 * 2 1 3 31 31 H 1.08003 * 120.77650 * 0.02562 * 4 3 2 32 32 H 1.08007 * 119.49942 * 179.70209 * 9 5 4 33 33 H 0.97000 * 120.00186 * 177.87360 * 12 11 10 34 34 H 0.97005 * 120.00120 * 185.00726 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1647 1.2118 0.0000 4 6 1.4810 2.4211 -0.0058 5 6 2.2180 3.5971 0.0000 6 7 1.5320 4.9087 -0.0004 7 8 2.2375 6.0209 -0.0009 8 8 0.2162 4.9635 -0.0004 9 6 3.5972 3.5321 0.0000 10 7 4.2231 2.3699 -0.0001 11 6 3.5617 1.2243 0.0003 12 7 4.2640 0.0206 -0.0003 13 6 5.6460 0.0263 -0.0458 14 6 6.3056 0.6000 -1.1328 15 1 7.2867 1.0321 -1.0023 16 6 5.6877 0.6160 -2.4093 17 7 4.4848 0.1504 -2.5539 18 14 6.6050 1.3070 -3.8824 19 1 7.9497 1.7705 -3.4554 20 1 6.7513 0.2498 -4.9151 21 1 5.8438 2.4496 -4.4483 22 6 6.3871 -0.5466 1.0043 23 6 7.8154 -0.4431 1.0123 24 7 8.9480 -0.3613 1.0202 25 6 5.7129 -1.2328 2.0651 26 7 5.1770 -1.7774 2.9065 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3632 0.5139 0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.9500 -0.8400 0.0004 31 1 0.4013 2.4455 -0.0100 32 1 4.1727 4.4461 -0.0003 33 1 3.7833 -0.8214 0.0312 34 1 4.0895 0.0941 -3.4380 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169078593.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:35:38 Heat of formation + Delta-G solvation = 132.468030 kcal Electronic energy + Delta-G solvation = -25157.681458 eV Core-core repulsion = 21288.622342 eV Total energy + Delta-G solvation = -3869.059116 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 314.091 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.86920 -38.56533 -37.40740 -36.20652 -35.46297 -34.91141 -34.04704 -33.97882 -32.04901 -31.02991 -29.32724 -27.31165 -26.56699 -25.93365 -23.21949 -22.09868 -21.47971 -19.40487 -18.89414 -18.18602 -17.70188 -17.44058 -16.63501 -16.40890 -15.71677 -15.66064 -15.28487 -14.87466 -14.67397 -14.01301 -13.68000 -13.51557 -13.07566 -12.97789 -12.77836 -12.48481 -12.23065 -12.04928 -11.88889 -11.74632 -11.71687 -11.27291 -11.12414 -11.02245 -10.97194 -10.92567 -10.82312 -10.46252 -10.39813 -10.25072 -9.62960 -9.11681 -8.23629 -7.87351 -7.05435 -5.58537 -0.35293 1.30336 1.41148 1.49558 1.98626 2.61128 2.67549 2.72861 3.09111 3.27510 3.31030 3.64395 3.76722 3.86704 4.01821 4.13591 4.44140 4.64723 4.73474 4.90720 4.98087 5.02393 5.29247 5.31655 5.42327 5.55014 5.70532 5.83978 6.02104 6.11198 6.29766 6.65812 6.89543 6.99713 7.13435 7.20162 7.42543 7.52137 7.60434 7.89887 8.20516 8.72674 8.95952 9.01183 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.010709 B = 0.005498 C = 0.004726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2614.102156 B = 5091.920541 C = 5922.954462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.740 5.740 3 C 0.119 3.881 4 C -0.085 4.085 5 C -0.090 4.090 6 N 0.014 4.986 7 O -0.202 6.202 8 O -0.212 6.212 9 C 0.194 3.806 10 N -0.477 5.477 11 C 0.456 3.544 12 N -0.611 5.611 13 C 0.373 3.627 14 C -0.349 4.349 15 H 0.115 0.885 16 C 0.074 3.926 17 N -0.739 5.739 18 Si 0.930 3.070 19 H -0.245 1.245 20 H -0.262 1.262 21 H -0.262 1.262 22 C -0.299 4.299 23 C 0.325 3.675 24 N -0.523 5.523 25 C 0.304 3.696 26 N -0.529 5.529 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.076 0.924 30 H 0.403 0.597 31 H 0.155 0.845 32 H 0.179 0.821 33 H 0.406 0.594 34 H 0.302 0.698 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.743 0.405 -5.269 10.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.374 5.374 3 C 0.010 3.990 4 C -0.118 4.118 5 C -0.186 4.186 6 N 0.480 4.520 7 O -0.389 6.389 8 O -0.397 6.397 9 C 0.031 3.969 10 N -0.195 5.195 11 C 0.213 3.787 12 N -0.233 5.233 13 C 0.270 3.730 14 C -0.376 4.376 15 H 0.133 0.867 16 C -0.156 4.156 17 N -0.359 5.359 18 Si 0.751 3.249 19 H -0.168 1.168 20 H -0.187 1.187 21 H -0.187 1.187 22 C -0.317 4.317 23 C 0.016 3.984 24 N -0.205 5.205 25 C -0.003 4.003 26 N -0.211 5.211 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.095 0.905 30 H 0.238 0.762 31 H 0.172 0.828 32 H 0.196 0.804 33 H 0.245 0.755 34 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -6.947 -0.851 -4.099 8.110 hybrid contribution -1.274 0.079 -1.128 1.703 sum -8.220 -0.772 -5.226 9.772 Atomic orbital electron populations 1.21561 0.79506 1.02720 1.01215 1.44098 1.05728 1.04134 1.83421 1.17845 0.89351 0.87498 1.04286 1.20280 1.01185 0.87945 1.02344 1.20830 0.93051 0.80953 1.23797 1.50180 1.02707 1.03944 0.95118 1.96244 1.64687 1.20565 1.57373 1.96220 0.89497 1.96159 1.57782 1.22435 0.88503 0.96777 0.89223 1.67814 1.36325 0.95668 1.19716 1.18155 0.85505 0.87262 0.87814 1.41505 1.05606 1.04200 1.71989 1.16713 0.78884 0.88427 0.88951 1.20582 1.02409 1.24349 0.90296 0.86670 1.26675 0.94354 0.92045 1.02493 1.69178 1.12546 1.25918 1.28247 0.85813 0.81258 0.79741 0.78128 1.16762 1.18691 1.18659 1.12782 0.83698 1.32435 1.02756 1.24554 0.91154 0.90932 0.91761 1.81065 1.12172 1.16256 1.11021 1.25274 0.92635 0.90992 0.91430 1.81124 1.09714 1.17653 1.12581 0.92779 0.92802 0.90499 0.76153 0.82764 0.80423 0.75543 0.88537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.78 9.98 59.85 0.60 1.38 16 2 N -0.74 -8.16 5.88 -65.10 -0.38 -8.55 16 3 C 0.12 1.65 6.70 -83.36 -0.56 1.09 16 4 C -0.09 -1.20 8.94 -39.12 -0.35 -1.55 16 5 C -0.09 -1.40 6.91 -79.80 -0.55 -1.95 16 6 N 0.01 0.23 4.98 34.03 0.17 0.40 16 7 O -0.20 -3.59 19.16 -31.57 -0.60 -4.19 16 8 O -0.21 -3.74 19.22 -31.57 -0.61 -4.35 16 9 C 0.19 2.99 10.72 -17.54 -0.19 2.80 16 10 N -0.48 -8.05 8.95 -12.21 -0.11 -8.16 16 11 C 0.46 7.28 6.28 -154.55 -0.97 6.31 16 12 N -0.61 -9.89 3.26 -9.57 -0.03 -9.92 16 13 C 0.37 6.90 5.43 -83.55 -0.45 6.44 16 14 C -0.35 -6.50 7.63 -37.74 -0.29 -6.79 16 15 H 0.12 2.24 7.20 -52.49 -0.38 1.86 16 16 C 0.07 1.27 5.37 -17.04 -0.09 1.18 16 17 N -0.74 -12.21 11.12 55.65 0.62 -11.59 16 18 Si 0.93 13.99 29.58 -169.99 -5.03 8.96 16 19 H -0.25 -3.85 7.11 56.52 0.40 -3.44 16 20 H -0.26 -3.91 7.11 56.52 0.40 -3.51 16 21 H -0.26 -4.02 7.11 56.52 0.40 -3.62 16 22 C -0.30 -5.94 5.87 -105.11 -0.62 -6.56 16 23 C 0.32 6.94 13.99 -22.49 -0.31 6.62 16 24 N -0.52 -11.77 18.53 41.82 0.78 -11.00 16 25 C 0.30 6.20 14.80 -22.46 -0.33 5.87 16 26 N -0.53 -11.25 18.54 41.86 0.78 -10.47 16 27 H 0.05 0.44 7.98 -51.93 -0.41 0.02 16 28 H 0.05 0.44 8.00 -51.93 -0.42 0.02 16 29 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.40 4.20 7.03 -40.82 -0.29 3.92 16 31 H 0.15 1.93 6.49 -52.48 -0.34 1.59 16 32 H 0.18 2.42 7.57 -52.48 -0.40 2.02 16 33 H 0.41 5.90 6.98 -40.82 -0.28 5.62 16 34 H 0.30 4.60 8.28 -40.82 -0.34 4.27 16 LS Contribution 330.82 15.07 4.99 4.99 Total: -1.00 -24.61 330.82 -5.63 -30.24 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: -2.07 Total: 8.80 kcal Atomic # 6 Polarization: 18.97 SS G_CDS: -4.12 Total: 14.85 kcal Atomic # 7 Polarization: -61.11 SS G_CDS: 1.82 Total: -59.29 kcal Atomic # 8 Polarization: -7.33 SS G_CDS: -1.21 Total: -8.55 kcal Atomic # 14 Polarization: 13.99 SS G_CDS: -5.03 Total: 8.96 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -24.61 -5.63 -30.24 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169078593.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.708 kcal (2) G-P(sol) polarization free energy of solvation -24.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 138.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.240 kcal (6) G-S(sol) free energy of system = (1) + (5) 132.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds