Wall clock time and date at job start Tue Mar 31 2020 10:35:38
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46507 * 1
3 3 C 1.39922 * 120.00034 * 2 1
4 4 C 1.38920 * 120.51764 * 359.72048 * 3 2 1
5 5 C 1.38794 * 118.44095 * 179.73671 * 4 3 2
6 6 N 1.48016 * 120.31070 * 180.24412 * 5 4 3
7 7 O 1.31705 * 119.99803 * 180.30339 * 6 5 4
8 8 O 1.31698 * 120.00010 * 0.30123 * 6 5 4
9 9 C 1.38068 * 119.37696 * 0.54035 * 5 4 3
10 10 N 1.32000 * 121.00215 * 359.72743 * 9 5 4
11 11 C 1.32280 * 121.69825 * 359.97438 * 10 9 5
12 12 N 1.39364 * 119.74243 * 179.97438 * 11 10 9
13 13 C 1.38282 * 120.00423 * 357.87260 * 12 11 10
14 14 C 1.39482 * 119.99525 * 299.26551 * 13 12 11
15 15 H 1.08000 * 119.99847 * 150.95754 * 14 13 12
16 16 C 1.41833 * 120.00160 * 330.95379 * 14 13 12
17 17 N 1.29794 * 119.99936 * 3.06005 * 16 14 13
18 18 Si 1.86794 * 120.00197 * 183.05548 * 16 14 13
19 19 H 1.48502 * 109.47340 * 0.02562 * 18 16 14
20 20 H 1.48506 * 109.47331 * 120.00188 * 18 16 14
21 21 H 1.48496 * 109.47375 * 240.00020 * 18 16 14
22 22 C 1.40721 * 120.00445 * 119.26494 * 13 12 11
23 23 C 1.43202 * 119.99721 * 185.17575 * 22 13 12
24 24 N 7.56081 * 171.76990 * 109.50349 * 2 1 3
25 25 C 1.43197 * 119.99824 * 5.16943 * 22 13 12
26 26 N 5.03838 * 137.45366 * 121.44740 * 2 1 3
27 27 H 1.08999 * 109.46797 * 59.99838 * 1 2 3
28 28 H 1.08996 * 109.46693 * 300.00304 * 1 2 3
29 29 H 1.08998 * 109.46732 * 180.02562 * 1 2 3
30 30 H 0.96999 * 119.99858 * 179.97438 * 2 1 3
31 31 H 1.08003 * 120.77650 * 0.02562 * 4 3 2
32 32 H 1.08007 * 119.49942 * 179.70209 * 9 5 4
33 33 H 0.97000 * 120.00186 * 177.87360 * 12 11 10
34 34 H 0.97005 * 120.00120 * 185.00726 * 17 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4651 0.0000 0.0000
3 6 2.1647 1.2118 0.0000
4 6 1.4810 2.4211 -0.0058
5 6 2.2180 3.5971 0.0000
6 7 1.5320 4.9087 -0.0004
7 8 2.2375 6.0209 -0.0009
8 8 0.2162 4.9635 -0.0004
9 6 3.5972 3.5321 0.0000
10 7 4.2231 2.3699 -0.0001
11 6 3.5617 1.2243 0.0003
12 7 4.2640 0.0206 -0.0003
13 6 5.6460 0.0263 -0.0458
14 6 6.3056 0.6000 -1.1328
15 1 7.2867 1.0321 -1.0023
16 6 5.6877 0.6160 -2.4093
17 7 4.4848 0.1504 -2.5539
18 14 6.6050 1.3070 -3.8824
19 1 7.9497 1.7705 -3.4554
20 1 6.7513 0.2498 -4.9151
21 1 5.8438 2.4496 -4.4483
22 6 6.3871 -0.5466 1.0043
23 6 7.8154 -0.4431 1.0123
24 7 8.9480 -0.3613 1.0202
25 6 5.7129 -1.2328 2.0651
26 7 5.1770 -1.7774 2.9065
27 1 -0.3633 0.5139 -0.8900
28 1 -0.3632 0.5139 0.8899
29 1 -0.3633 -1.0277 0.0005
30 1 1.9500 -0.8400 0.0004
31 1 0.4013 2.4455 -0.0100
32 1 4.1727 4.4461 -0.0003
33 1 3.7833 -0.8214 0.0312
34 1 4.0895 0.0941 -3.4380
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001169078593.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:35:38
Heat of formation + Delta-G solvation = 132.468030 kcal
Electronic energy + Delta-G solvation = -25157.681458 eV
Core-core repulsion = 21288.622342 eV
Total energy + Delta-G solvation = -3869.059116 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 314.091 amu
Computer time = 0.55 seconds
Orbital eigenvalues (eV)
-40.86920 -38.56533 -37.40740 -36.20652 -35.46297 -34.91141 -34.04704 -33.97882
-32.04901 -31.02991 -29.32724 -27.31165 -26.56699 -25.93365 -23.21949 -22.09868
-21.47971 -19.40487 -18.89414 -18.18602 -17.70188 -17.44058 -16.63501 -16.40890
-15.71677 -15.66064 -15.28487 -14.87466 -14.67397 -14.01301 -13.68000 -13.51557
-13.07566 -12.97789 -12.77836 -12.48481 -12.23065 -12.04928 -11.88889 -11.74632
-11.71687 -11.27291 -11.12414 -11.02245 -10.97194 -10.92567 -10.82312 -10.46252
-10.39813 -10.25072 -9.62960 -9.11681 -8.23629 -7.87351 -7.05435 -5.58537
-0.35293 1.30336 1.41148 1.49558 1.98626 2.61128 2.67549 2.72861
3.09111 3.27510 3.31030 3.64395 3.76722 3.86704 4.01821 4.13591
4.44140 4.64723 4.73474 4.90720 4.98087 5.02393 5.29247 5.31655
5.42327 5.55014 5.70532 5.83978 6.02104 6.11198 6.29766 6.65812
6.89543 6.99713 7.13435 7.20162 7.42543 7.52137 7.60434 7.89887
8.20516 8.72674 8.95952 9.01183
Molecular weight = 314.09amu
Principal moments of inertia in cm(-1)
A = 0.010709 B = 0.005498 C = 0.004726
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2614.102156 B = 5091.920541 C = 5922.954462
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.095 3.905
2 N -0.740 5.740
3 C 0.119 3.881
4 C -0.085 4.085
5 C -0.090 4.090
6 N 0.014 4.986
7 O -0.202 6.202
8 O -0.212 6.212
9 C 0.194 3.806
10 N -0.477 5.477
11 C 0.456 3.544
12 N -0.611 5.611
13 C 0.373 3.627
14 C -0.349 4.349
15 H 0.115 0.885
16 C 0.074 3.926
17 N -0.739 5.739
18 Si 0.930 3.070
19 H -0.245 1.245
20 H -0.262 1.262
21 H -0.262 1.262
22 C -0.299 4.299
23 C 0.325 3.675
24 N -0.523 5.523
25 C 0.304 3.696
26 N -0.529 5.529
27 H 0.054 0.946
28 H 0.053 0.947
29 H 0.076 0.924
30 H 0.403 0.597
31 H 0.155 0.845
32 H 0.179 0.821
33 H 0.406 0.594
34 H 0.302 0.698
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.743 0.405 -5.269 10.216
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.050 4.050
2 N -0.374 5.374
3 C 0.010 3.990
4 C -0.118 4.118
5 C -0.186 4.186
6 N 0.480 4.520
7 O -0.389 6.389
8 O -0.397 6.397
9 C 0.031 3.969
10 N -0.195 5.195
11 C 0.213 3.787
12 N -0.233 5.233
13 C 0.270 3.730
14 C -0.376 4.376
15 H 0.133 0.867
16 C -0.156 4.156
17 N -0.359 5.359
18 Si 0.751 3.249
19 H -0.168 1.168
20 H -0.187 1.187
21 H -0.187 1.187
22 C -0.317 4.317
23 C 0.016 3.984
24 N -0.205 5.205
25 C -0.003 4.003
26 N -0.211 5.211
27 H 0.072 0.928
28 H 0.072 0.928
29 H 0.095 0.905
30 H 0.238 0.762
31 H 0.172 0.828
32 H 0.196 0.804
33 H 0.245 0.755
34 H 0.115 0.885
Dipole moment (debyes) X Y Z Total
from point charges -6.947 -0.851 -4.099 8.110
hybrid contribution -1.274 0.079 -1.128 1.703
sum -8.220 -0.772 -5.226 9.772
Atomic orbital electron populations
1.21561 0.79506 1.02720 1.01215 1.44098 1.05728 1.04134 1.83421
1.17845 0.89351 0.87498 1.04286 1.20280 1.01185 0.87945 1.02344
1.20830 0.93051 0.80953 1.23797 1.50180 1.02707 1.03944 0.95118
1.96244 1.64687 1.20565 1.57373 1.96220 0.89497 1.96159 1.57782
1.22435 0.88503 0.96777 0.89223 1.67814 1.36325 0.95668 1.19716
1.18155 0.85505 0.87262 0.87814 1.41505 1.05606 1.04200 1.71989
1.16713 0.78884 0.88427 0.88951 1.20582 1.02409 1.24349 0.90296
0.86670 1.26675 0.94354 0.92045 1.02493 1.69178 1.12546 1.25918
1.28247 0.85813 0.81258 0.79741 0.78128 1.16762 1.18691 1.18659
1.12782 0.83698 1.32435 1.02756 1.24554 0.91154 0.90932 0.91761
1.81065 1.12172 1.16256 1.11021 1.25274 0.92635 0.90992 0.91430
1.81124 1.09714 1.17653 1.12581 0.92779 0.92802 0.90499 0.76153
0.82764 0.80423 0.75543 0.88537
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.09 0.78 9.98 59.85 0.60 1.38 16
2 N -0.74 -8.16 5.88 -65.10 -0.38 -8.55 16
3 C 0.12 1.65 6.70 -83.36 -0.56 1.09 16
4 C -0.09 -1.20 8.94 -39.12 -0.35 -1.55 16
5 C -0.09 -1.40 6.91 -79.80 -0.55 -1.95 16
6 N 0.01 0.23 4.98 34.03 0.17 0.40 16
7 O -0.20 -3.59 19.16 -31.57 -0.60 -4.19 16
8 O -0.21 -3.74 19.22 -31.57 -0.61 -4.35 16
9 C 0.19 2.99 10.72 -17.54 -0.19 2.80 16
10 N -0.48 -8.05 8.95 -12.21 -0.11 -8.16 16
11 C 0.46 7.28 6.28 -154.55 -0.97 6.31 16
12 N -0.61 -9.89 3.26 -9.57 -0.03 -9.92 16
13 C 0.37 6.90 5.43 -83.55 -0.45 6.44 16
14 C -0.35 -6.50 7.63 -37.74 -0.29 -6.79 16
15 H 0.12 2.24 7.20 -52.49 -0.38 1.86 16
16 C 0.07 1.27 5.37 -17.04 -0.09 1.18 16
17 N -0.74 -12.21 11.12 55.65 0.62 -11.59 16
18 Si 0.93 13.99 29.58 -169.99 -5.03 8.96 16
19 H -0.25 -3.85 7.11 56.52 0.40 -3.44 16
20 H -0.26 -3.91 7.11 56.52 0.40 -3.51 16
21 H -0.26 -4.02 7.11 56.52 0.40 -3.62 16
22 C -0.30 -5.94 5.87 -105.11 -0.62 -6.56 16
23 C 0.32 6.94 13.99 -22.49 -0.31 6.62 16
24 N -0.52 -11.77 18.53 41.82 0.78 -11.00 16
25 C 0.30 6.20 14.80 -22.46 -0.33 5.87 16
26 N -0.53 -11.25 18.54 41.86 0.78 -10.47 16
27 H 0.05 0.44 7.98 -51.93 -0.41 0.02 16
28 H 0.05 0.44 8.00 -51.93 -0.42 0.02 16
29 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16
30 H 0.40 4.20 7.03 -40.82 -0.29 3.92 16
31 H 0.15 1.93 6.49 -52.48 -0.34 1.59 16
32 H 0.18 2.42 7.57 -52.48 -0.40 2.02 16
33 H 0.41 5.90 6.98 -40.82 -0.28 5.62 16
34 H 0.30 4.60 8.28 -40.82 -0.34 4.27 16
LS Contribution 330.82 15.07 4.99 4.99
Total: -1.00 -24.61 330.82 -5.63 -30.24
By element:
Atomic # 1 Polarization: 10.87 SS G_CDS: -2.07 Total: 8.80 kcal
Atomic # 6 Polarization: 18.97 SS G_CDS: -4.12 Total: 14.85 kcal
Atomic # 7 Polarization: -61.11 SS G_CDS: 1.82 Total: -59.29 kcal
Atomic # 8 Polarization: -7.33 SS G_CDS: -1.21 Total: -8.55 kcal
Atomic # 14 Polarization: 13.99 SS G_CDS: -5.03 Total: 8.96 kcal
Total LS contribution 4.99 Total: 4.99 kcal
Total: -24.61 -5.63 -30.24 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001169078593.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 162.708 kcal
(2) G-P(sol) polarization free energy of solvation -24.611 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 138.096 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.628 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.240 kcal
(6) G-S(sol) free energy of system = (1) + (5) 132.468 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.55 seconds