Wall clock time and date at job start Tue Mar 31 2020 10:35:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.39922 * 120.00034 * 2 1 4 4 C 1.38920 * 120.51764 * 359.72048 * 3 2 1 5 5 C 1.38794 * 118.44095 * 179.73671 * 4 3 2 6 6 N 1.48016 * 120.31070 * 180.24412 * 5 4 3 7 7 O 1.31705 * 119.99803 * 180.30339 * 6 5 4 8 8 O 1.31698 * 120.00010 * 0.30123 * 6 5 4 9 9 C 1.38068 * 119.37696 * 0.54035 * 5 4 3 10 10 N 1.32000 * 121.00215 * 359.72743 * 9 5 4 11 11 C 1.32280 * 121.69825 * 359.97438 * 10 9 5 12 12 N 1.39364 * 119.74243 * 179.97438 * 11 10 9 13 13 C 1.38282 * 120.00423 * 357.87260 * 12 11 10 14 14 C 1.39482 * 119.99525 * 299.26551 * 13 12 11 15 15 H 1.08000 * 119.99847 * 150.95754 * 14 13 12 16 16 C 1.41833 * 120.00160 * 330.95379 * 14 13 12 17 17 N 1.29794 * 119.99936 * 3.06005 * 16 14 13 18 18 Si 1.86794 * 120.00197 * 183.05548 * 16 14 13 19 19 H 1.48502 * 109.47340 * 0.02562 * 18 16 14 20 20 H 1.48506 * 109.47331 * 120.00188 * 18 16 14 21 21 H 1.48496 * 109.47375 * 240.00020 * 18 16 14 22 22 C 1.40721 * 120.00445 * 119.26494 * 13 12 11 23 23 C 1.43202 * 119.99721 * 185.17575 * 22 13 12 24 24 N 7.56081 * 171.76990 * 109.50349 * 2 1 3 25 25 C 1.43197 * 119.99824 * 5.16943 * 22 13 12 26 26 N 5.03838 * 137.45366 * 121.44740 * 2 1 3 27 27 H 1.08999 * 109.46797 * 59.99838 * 1 2 3 28 28 H 1.08996 * 109.46693 * 300.00304 * 1 2 3 29 29 H 1.08998 * 109.46732 * 180.02562 * 1 2 3 30 30 H 0.96999 * 119.99858 * 179.97438 * 2 1 3 31 31 H 1.08003 * 120.77650 * 0.02562 * 4 3 2 32 32 H 1.08007 * 119.49942 * 179.70209 * 9 5 4 33 33 H 0.97000 * 120.00186 * 177.87360 * 12 11 10 34 34 H 0.97005 * 120.00120 * 185.00726 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1647 1.2118 0.0000 4 6 1.4810 2.4211 -0.0058 5 6 2.2180 3.5971 0.0000 6 7 1.5320 4.9087 -0.0004 7 8 2.2375 6.0209 -0.0009 8 8 0.2162 4.9635 -0.0004 9 6 3.5972 3.5321 0.0000 10 7 4.2231 2.3699 -0.0001 11 6 3.5617 1.2243 0.0003 12 7 4.2640 0.0206 -0.0003 13 6 5.6460 0.0263 -0.0458 14 6 6.3056 0.6000 -1.1328 15 1 7.2867 1.0321 -1.0023 16 6 5.6877 0.6160 -2.4093 17 7 4.4848 0.1504 -2.5539 18 14 6.6050 1.3070 -3.8824 19 1 7.9497 1.7705 -3.4554 20 1 6.7513 0.2498 -4.9151 21 1 5.8438 2.4496 -4.4483 22 6 6.3871 -0.5466 1.0043 23 6 7.8154 -0.4431 1.0123 24 7 8.9480 -0.3613 1.0202 25 6 5.7129 -1.2328 2.0651 26 7 5.1770 -1.7774 2.9065 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3632 0.5139 0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.9500 -0.8400 0.0004 31 1 0.4013 2.4455 -0.0100 32 1 4.1727 4.4461 -0.0003 33 1 3.7833 -0.8214 0.0312 34 1 4.0895 0.0941 -3.4380 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169078593.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:35:37 Heat of formation + Delta-G solvation = 120.026248 kcal Electronic energy + Delta-G solvation = -25158.220974 eV Core-core repulsion = 21288.622342 eV Total energy + Delta-G solvation = -3869.598632 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 314.091 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.07220 -39.88590 -38.79356 -37.22436 -37.02636 -36.56865 -35.38688 -35.32299 -33.36664 -32.24449 -30.55932 -28.79312 -27.58480 -27.12008 -24.44607 -23.23241 -22.84090 -20.88059 -20.05313 -19.46225 -19.11225 -18.80902 -17.94136 -17.70070 -17.00763 -16.79502 -16.55148 -15.87314 -15.77283 -15.22425 -14.84703 -14.56874 -14.50342 -14.36205 -14.20160 -13.93504 -13.50109 -13.45764 -13.38770 -13.08798 -12.89315 -12.78691 -12.75192 -12.37473 -12.26049 -12.21305 -11.85537 -11.79113 -11.77376 -11.55249 -10.85983 -10.36649 -9.61317 -9.17978 -8.19895 -7.11121 -1.68678 0.11257 0.17177 0.21751 0.62656 1.36637 1.45611 1.51605 1.88747 2.02047 2.06551 2.20874 2.26592 2.48112 2.56228 2.62376 3.22956 3.39439 3.47288 3.56402 3.76053 3.85591 4.14656 4.39124 4.52623 4.59309 4.65441 4.66924 4.69202 4.96514 5.07266 5.35072 5.50282 5.72501 5.83339 5.97706 6.10447 6.24302 6.47649 6.55979 6.95094 7.12981 7.31848 7.66564 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.010709 B = 0.005498 C = 0.004726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2614.102156 B = 5091.920541 C = 5922.954462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.733 5.733 3 C 0.131 3.869 4 C -0.087 4.087 5 C -0.089 4.089 6 N 0.016 4.984 7 O -0.223 6.223 8 O -0.221 6.221 9 C 0.190 3.810 10 N -0.498 5.498 11 C 0.443 3.557 12 N -0.608 5.608 13 C 0.372 3.628 14 C -0.348 4.348 15 H 0.103 0.897 16 C 0.055 3.945 17 N -0.730 5.730 18 Si 0.976 3.024 19 H -0.258 1.258 20 H -0.254 1.254 21 H -0.262 1.262 22 C -0.314 4.314 23 C 0.329 3.671 24 N -0.553 5.553 25 C 0.313 3.687 26 N -0.549 5.549 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.101 0.899 30 H 0.407 0.593 31 H 0.172 0.828 32 H 0.190 0.810 33 H 0.413 0.587 34 H 0.313 0.687 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.260 -0.095 -6.503 12.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.366 5.366 3 C 0.020 3.980 4 C -0.120 4.120 5 C -0.186 4.186 6 N 0.479 4.521 7 O -0.405 6.405 8 O -0.405 6.405 9 C 0.027 3.973 10 N -0.217 5.217 11 C 0.200 3.800 12 N -0.231 5.231 13 C 0.268 3.732 14 C -0.375 4.375 15 H 0.121 0.879 16 C -0.176 4.176 17 N -0.349 5.349 18 Si 0.796 3.204 19 H -0.182 1.182 20 H -0.178 1.178 21 H -0.187 1.187 22 C -0.332 4.332 23 C 0.022 3.978 24 N -0.236 5.236 25 C 0.007 3.993 26 N -0.232 5.232 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.120 0.880 30 H 0.243 0.757 31 H 0.189 0.811 32 H 0.207 0.793 33 H 0.253 0.747 34 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -8.515 -1.348 -5.327 10.134 hybrid contribution -0.896 0.196 -0.839 1.243 sum -9.411 -1.152 -6.166 11.310 Atomic orbital electron populations 1.21809 0.77508 1.04633 1.01626 1.44302 1.06974 1.03237 1.82053 1.17808 0.88586 0.88544 1.03033 1.20425 1.01949 0.87301 1.02322 1.20973 0.93210 0.80664 1.23719 1.50345 1.02617 1.04339 0.94797 1.96241 1.64616 1.21176 1.58492 1.96206 0.89868 1.96254 1.58129 1.22587 0.88705 0.96827 0.89177 1.67773 1.37233 0.96289 1.20367 1.18346 0.86394 0.86914 0.88347 1.41358 1.04724 1.04736 1.72301 1.16604 0.79920 0.88251 0.88379 1.20672 1.02049 1.23637 0.91170 0.87896 1.27033 0.95042 0.92418 1.03082 1.69133 1.12352 1.24065 1.29367 0.85140 0.79705 0.79294 0.76306 1.18168 1.17822 1.18691 1.12825 0.83098 1.33789 1.03534 1.24815 0.91473 0.90365 0.91133 1.81049 1.12906 1.17675 1.11997 1.25289 0.92267 0.90606 0.91170 1.81118 1.10318 1.18634 1.13112 0.92221 0.92390 0.87992 0.75728 0.81080 0.79343 0.74673 0.87370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.15 9.98 127.77 1.27 2.43 16 2 N -0.73 -14.14 5.88 -359.88 -2.12 -16.26 16 3 C 0.13 3.34 6.70 38.37 0.26 3.60 16 4 C -0.09 -2.26 8.94 22.57 0.20 -2.06 16 5 C -0.09 -2.65 6.91 36.47 0.25 -2.40 16 6 N 0.02 0.54 4.98 -46.24 -0.23 0.31 16 7 O -0.22 -7.80 19.16 3.51 0.07 -7.74 16 8 O -0.22 -7.52 19.22 3.52 0.07 -7.45 16 9 C 0.19 5.68 10.72 84.63 0.91 6.59 16 10 N -0.50 -16.31 8.95 -192.54 -1.72 -18.03 16 11 C 0.44 13.48 6.28 133.11 0.84 14.31 16 12 N -0.61 -18.87 3.26 -184.18 -0.60 -19.47 16 13 C 0.37 13.50 5.43 39.03 0.21 13.71 16 14 C -0.35 -12.72 7.63 23.46 0.18 -12.54 16 15 H 0.10 4.01 7.20 -2.91 -0.02 3.99 16 16 C 0.05 1.78 5.37 85.88 0.46 2.25 16 17 N -0.73 -22.42 11.12 22.15 0.25 -22.17 16 18 Si 0.98 27.14 29.58 68.60 2.03 29.17 16 19 H -0.26 -7.74 7.11 99.48 0.71 -7.03 16 20 H -0.25 -6.76 7.11 99.48 0.71 -6.05 16 21 H -0.26 -7.33 7.11 99.48 0.71 -6.62 16 22 C -0.31 -12.44 5.87 -20.18 -0.12 -12.56 16 23 C 0.33 14.18 13.99 88.34 1.24 15.42 16 24 N -0.55 -25.15 18.53 19.00 0.35 -24.80 16 25 C 0.31 12.67 14.80 88.32 1.31 13.98 16 26 N -0.55 -23.09 18.54 19.01 0.35 -22.74 16 27 H 0.06 0.76 7.98 -2.39 -0.02 0.74 16 28 H 0.06 0.76 8.00 -2.39 -0.02 0.74 16 29 H 0.10 0.86 8.14 -2.39 -0.02 0.85 16 30 H 0.41 7.40 7.03 -92.71 -0.65 6.75 16 31 H 0.17 3.81 6.49 -2.91 -0.02 3.79 16 32 H 0.19 5.03 7.57 -2.91 -0.02 5.01 16 33 H 0.41 11.36 6.98 -92.71 -0.65 10.72 16 34 H 0.31 8.62 8.28 -92.70 -0.77 7.86 16 Total: -1.00 -51.12 330.82 5.38 -45.74 By element: Atomic # 1 Polarization: 20.79 SS G_CDS: -0.06 Total: 20.73 kcal Atomic # 6 Polarization: 35.72 SS G_CDS: 7.00 Total: 42.72 kcal Atomic # 7 Polarization: -119.45 SS G_CDS: -3.72 Total: -123.17 kcal Atomic # 8 Polarization: -15.32 SS G_CDS: 0.13 Total: -15.19 kcal Atomic # 14 Polarization: 27.14 SS G_CDS: 2.03 Total: 29.17 kcal Total: -51.12 5.38 -45.74 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169078593.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.765 kcal (2) G-P(sol) polarization free energy of solvation -51.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.738 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds