Wall clock time and date at job start Tue Mar 31 2020 10:43:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31074 * 1 3 3 Si 1.86804 * 119.99917 * 2 1 4 4 H 1.48504 * 109.47205 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47344 * 299.99738 * 3 2 1 6 6 H 1.48503 * 109.46887 * 60.00170 * 3 2 1 7 7 C 1.39677 * 120.00140 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99506 * 180.02562 * 7 2 1 9 9 C 1.40904 * 119.99770 * 0.02562 * 7 2 1 10 10 C 1.38951 * 126.93847 * 21.54159 * 9 7 2 11 11 N 1.35657 * 109.24257 * 180.02562 * 10 9 7 12 12 H 0.97006 * 124.70016 * 180.02562 * 11 10 9 13 13 C 1.38134 * 110.60569 * 0.02562 * 11 10 9 14 14 C 1.39201 * 132.74840 * 180.02562 * 13 11 10 15 15 C 1.37941 * 120.13435 * 179.97438 * 14 13 11 16 16 C 1.38491 * 120.70838 * 0.02562 * 15 14 13 17 17 C 1.38686 * 120.15328 * 359.97438 * 16 15 14 18 18 N 1.39404 * 120.22745 * 179.97438 * 17 16 15 19 19 C 1.46502 * 120.00348 * 355.76338 * 18 17 16 20 20 C 1.52995 * 109.47362 * 179.97438 * 19 18 17 21 21 H 1.09002 * 109.47527 * 304.99946 * 20 19 18 22 22 O 1.42896 * 109.47067 * 65.00387 * 20 19 18 23 23 C 1.53002 * 109.47337 * 185.00132 * 20 19 18 24 24 F 1.39903 * 109.46994 * 59.99825 * 23 20 19 25 25 F 1.39894 * 109.47290 * 180.02562 * 23 20 19 26 26 F 1.39901 * 109.47213 * 300.00633 * 23 20 19 27 27 C 1.39802 * 119.54238 * 359.97438 * 17 16 15 28 28 H 0.96999 * 120.00325 * 0.02562 * 1 2 3 29 29 H 1.08005 * 125.38285 * 0.02562 * 10 9 7 30 30 H 1.08003 * 119.93141 * 359.97438 * 14 13 11 31 31 H 1.08005 * 119.64302 * 180.02562 * 15 14 13 32 32 H 1.08006 * 119.92172 * 179.72357 * 16 15 14 33 33 H 0.96999 * 120.00149 * 175.76173 * 18 17 16 34 34 H 1.08998 * 109.47356 * 300.00387 * 19 18 17 35 35 H 1.09012 * 109.46798 * 59.99805 * 19 18 17 36 36 H 0.96701 * 114.00056 * 59.99629 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3107 0.0000 0.0000 3 14 2.2447 1.6178 0.0000 4 1 3.7048 1.3465 0.0006 5 1 1.8861 2.3965 -1.2125 6 1 1.8860 2.3964 1.2126 7 6 2.0092 -1.2096 -0.0005 8 1 3.0892 -1.2095 -0.0001 9 6 1.3046 -2.4299 -0.0016 10 6 -0.0074 -2.6362 -0.4101 11 7 -0.3217 -3.9472 -0.2591 12 1 -1.1826 -4.3374 -0.4773 13 6 0.7540 -4.6497 0.2483 14 6 0.9377 -5.9903 0.5752 15 6 2.1488 -6.4215 1.0751 16 6 3.1949 -5.5327 1.2590 17 6 3.0346 -4.1926 0.9401 18 7 4.0863 -3.2965 1.1250 19 6 5.3345 -3.7496 1.7439 20 6 6.3163 -2.5792 1.8279 21 1 6.4543 -2.1487 0.8361 22 8 5.7962 -1.5836 2.7112 23 6 7.6616 -3.0790 2.3585 24 9 8.1708 -4.0538 1.4937 25 9 8.5591 -2.0088 2.4359 26 9 7.4846 -3.6317 3.6315 27 6 1.8110 -3.7465 0.4319 28 1 -0.4850 0.8400 -0.0004 29 1 -0.6720 -1.8734 -0.7880 30 1 0.1302 -6.6941 0.4373 31 1 2.2828 -7.4635 1.3258 32 1 4.1364 -5.8834 1.6554 33 1 3.9918 -2.3729 0.8440 34 1 5.1281 -4.1238 2.7466 35 1 5.7705 -4.5466 1.1413 36 1 5.6481 -1.8973 3.6139 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169458796.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:43:28 Heat of formation + Delta-G solvation = -151.548921 kcal Electronic energy + Delta-G solvation = -26205.564345 eV Core-core repulsion = 21853.580182 eV Total energy + Delta-G solvation = -4351.984163 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 314.098 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -50.33335 -47.85126 -47.79850 -39.73676 -38.18029 -36.28379 -34.35092 -33.23076 -31.02826 -29.45337 -27.94092 -27.46158 -25.38432 -24.40095 -22.60891 -21.13910 -20.44348 -19.47376 -18.82179 -18.74587 -18.47516 -17.56957 -15.99985 -15.85262 -15.81773 -15.38267 -15.00366 -14.63715 -14.50753 -14.39322 -14.23943 -14.15484 -13.95086 -13.93008 -13.63057 -13.43742 -13.12304 -12.76877 -12.57259 -12.48481 -11.68462 -11.41202 -11.26193 -11.17507 -10.80838 -10.77336 -10.61736 -10.50390 -9.80674 -9.78117 -9.41529 -9.08268 -7.48168 -7.02472 -6.49091 -6.09843 -4.00810 2.37460 2.42461 2.71781 3.09675 3.19088 3.23454 3.33283 3.51155 3.72624 4.08815 4.18200 4.23853 4.27298 4.49505 4.60961 4.77958 4.91446 5.46821 5.52394 5.60623 5.77349 6.01548 6.11775 6.44439 6.59600 6.81217 7.05722 7.10289 7.13795 7.24468 7.46235 7.48586 7.80888 7.88030 8.15161 8.36428 8.50147 8.69943 9.02391 9.13320 9.21901 10.52714 Molecular weight = 314.10amu Principal moments of inertia in cm(-1) A = 0.010990 B = 0.005412 C = 0.003759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2547.193431 B = 5172.386520 C = 7446.577303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.833 5.833 2 C 0.064 3.936 3 Si 0.907 3.093 4 H -0.264 1.264 5 H -0.279 1.279 6 H -0.278 1.278 7 C -0.430 4.430 8 H 0.066 0.934 9 C 0.035 3.965 10 C -0.088 4.088 11 N -0.587 5.587 12 H 0.394 0.606 13 C 0.118 3.882 14 C -0.203 4.203 15 C -0.069 4.069 16 C -0.275 4.275 17 C 0.274 3.726 18 N -0.738 5.738 19 C 0.098 3.902 20 C 0.061 3.939 21 H 0.148 0.852 22 O -0.520 6.520 23 C 0.425 3.575 24 F -0.178 7.178 25 F -0.175 7.175 26 F -0.182 7.182 27 C -0.183 4.183 28 H 0.271 0.729 29 H 0.173 0.827 30 H 0.097 0.903 31 H 0.104 0.896 32 H 0.102 0.898 33 H 0.414 0.586 34 H 0.070 0.930 35 H 0.076 0.924 36 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.753 -5.803 3.739 11.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.463 5.463 2 C -0.147 4.147 3 Si 0.734 3.266 4 H -0.188 1.188 5 H -0.205 1.205 6 H -0.204 1.204 7 C -0.463 4.463 8 H 0.084 0.916 9 C 0.030 3.970 10 C -0.212 4.212 11 N -0.187 5.187 12 H 0.227 0.773 13 C 0.005 3.995 14 C -0.226 4.226 15 C -0.089 4.089 16 C -0.301 4.301 17 C 0.171 3.829 18 N -0.374 5.374 19 C -0.028 4.028 20 C -0.001 4.001 21 H 0.165 0.835 22 O -0.326 6.326 23 C 0.370 3.630 24 F -0.159 7.159 25 F -0.157 7.157 26 F -0.164 7.164 27 C -0.193 4.193 28 H 0.082 0.918 29 H 0.190 0.810 30 H 0.115 0.885 31 H 0.122 0.878 32 H 0.120 0.880 33 H 0.254 0.746 34 H 0.088 0.912 35 H 0.094 0.906 36 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 9.676 -5.257 3.255 11.483 hybrid contribution 0.168 0.487 0.503 0.720 sum 9.843 -4.770 3.758 11.566 Atomic orbital electron populations 1.69699 1.06970 1.27793 1.41852 1.25576 0.94857 1.00323 0.93958 0.86258 0.80541 0.81783 0.78053 1.18800 1.20462 1.20411 1.18509 0.92950 0.89189 1.45681 0.91603 1.17884 0.92029 0.89355 0.97720 1.22570 1.00309 0.82549 1.15796 1.41464 1.11480 1.08619 1.57150 0.77299 1.17900 0.88314 0.92300 1.01024 1.19574 0.98449 0.92343 1.12276 1.20103 0.92357 0.97502 0.98938 1.19956 1.00156 0.91806 1.18156 1.17100 0.85481 0.88470 0.91855 1.44533 1.11509 1.13193 1.68118 1.21761 0.86449 0.94711 0.99928 1.23416 0.87274 0.92217 0.97201 0.83485 1.86785 1.84803 1.36206 1.24772 1.21530 0.89472 0.75802 0.76193 1.93207 1.88952 1.64065 1.69682 1.93215 1.70603 1.55770 1.96090 1.93186 1.95457 1.86139 1.41594 1.18970 0.92498 0.96146 1.11674 0.91816 0.81007 0.88517 0.87779 0.88020 0.74553 0.91176 0.90625 0.76348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -21.60 10.80 55.54 0.60 -21.01 16 2 C 0.06 1.61 5.47 -17.34 -0.09 1.52 16 3 Si 0.91 19.35 29.56 -169.99 -5.02 14.33 16 4 H -0.26 -5.54 7.11 56.52 0.40 -5.13 16 5 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 6 H -0.28 -5.96 7.11 56.52 0.40 -5.55 16 7 C -0.43 -11.13 8.82 -38.04 -0.34 -11.46 16 8 H 0.07 1.62 5.65 -52.48 -0.30 1.32 16 9 C 0.04 0.92 5.98 -104.82 -0.63 0.29 16 10 C -0.09 -2.20 10.77 -15.60 -0.17 -2.37 16 11 N -0.59 -12.68 5.99 -9.80 -0.06 -12.73 16 12 H 0.39 6.98 8.96 -40.82 -0.37 6.61 16 13 C 0.12 2.62 7.23 -83.92 -0.61 2.01 16 14 C -0.20 -3.93 10.07 -39.33 -0.40 -4.32 16 15 C -0.07 -1.24 10.00 -39.60 -0.40 -1.64 16 16 C -0.28 -5.11 9.32 -39.32 -0.37 -5.48 16 17 C 0.27 5.69 6.67 -83.67 -0.56 5.14 16 18 N -0.74 -13.29 5.67 -58.52 -0.33 -13.63 16 19 C 0.10 1.30 4.33 -4.04 -0.02 1.28 16 20 C 0.06 0.71 3.00 -26.73 -0.08 0.63 16 21 H 0.15 1.65 8.14 -51.93 -0.42 1.23 16 22 O -0.52 -6.58 13.23 -35.23 -0.47 -7.04 16 23 C 0.43 4.64 2.85 37.16 0.11 4.74 16 24 F -0.18 -1.99 16.71 2.25 0.04 -1.95 16 25 F -0.18 -2.08 17.26 2.25 0.04 -2.04 16 26 F -0.18 -1.96 16.51 2.25 0.04 -1.92 16 27 C -0.18 -4.37 6.27 -104.75 -0.66 -5.02 16 28 H 0.27 6.54 8.30 -40.82 -0.34 6.20 16 29 H 0.17 4.41 6.36 -52.48 -0.33 4.08 16 30 H 0.10 1.62 8.06 -52.48 -0.42 1.20 16 31 H 0.10 1.54 8.06 -52.48 -0.42 1.12 16 32 H 0.10 1.63 6.73 -52.48 -0.35 1.27 16 33 H 0.41 8.10 5.48 -40.82 -0.22 7.87 16 34 H 0.07 0.87 7.90 -51.93 -0.41 0.46 16 35 H 0.08 0.94 7.31 -51.92 -0.38 0.56 16 36 H 0.39 3.62 8.69 45.56 0.40 4.02 16 LS Contribution 317.47 15.07 4.78 4.78 Total: -1.00 -29.17 317.47 -6.95 -36.12 By element: Atomic # 1 Polarization: 22.15 SS G_CDS: -2.37 Total: 19.78 kcal Atomic # 6 Polarization: -10.49 SS G_CDS: -4.20 Total: -14.68 kcal Atomic # 7 Polarization: -47.57 SS G_CDS: 0.21 Total: -47.37 kcal Atomic # 8 Polarization: -6.58 SS G_CDS: -0.47 Total: -7.04 kcal Atomic # 9 Polarization: -6.03 SS G_CDS: 0.11 Total: -5.91 kcal Atomic # 14 Polarization: 19.35 SS G_CDS: -5.02 Total: 14.33 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -29.17 -6.95 -36.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169458796.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.433 kcal (2) G-P(sol) polarization free energy of solvation -29.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds