Wall clock time and date at job start Tue Mar 31 2020 10:43:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31074 * 1 3 3 Si 1.86804 * 119.99917 * 2 1 4 4 H 1.48504 * 109.47205 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47344 * 299.99738 * 3 2 1 6 6 H 1.48503 * 109.46887 * 60.00170 * 3 2 1 7 7 C 1.39677 * 120.00140 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99506 * 180.02562 * 7 2 1 9 9 C 1.40904 * 119.99770 * 0.02562 * 7 2 1 10 10 C 1.38951 * 126.93847 * 21.54159 * 9 7 2 11 11 N 1.35657 * 109.24257 * 180.02562 * 10 9 7 12 12 H 0.97006 * 124.70016 * 180.02562 * 11 10 9 13 13 C 1.38134 * 110.60569 * 0.02562 * 11 10 9 14 14 C 1.39201 * 132.74840 * 180.02562 * 13 11 10 15 15 C 1.37941 * 120.13435 * 179.97438 * 14 13 11 16 16 C 1.38491 * 120.70838 * 0.02562 * 15 14 13 17 17 C 1.38686 * 120.15328 * 359.97438 * 16 15 14 18 18 N 1.39404 * 120.22745 * 179.97438 * 17 16 15 19 19 C 1.46502 * 120.00348 * 355.76338 * 18 17 16 20 20 C 1.52995 * 109.47362 * 179.97438 * 19 18 17 21 21 H 1.09002 * 109.47527 * 304.99946 * 20 19 18 22 22 O 1.42896 * 109.47067 * 65.00387 * 20 19 18 23 23 C 1.53002 * 109.47337 * 185.00132 * 20 19 18 24 24 F 1.39903 * 109.46994 * 59.99825 * 23 20 19 25 25 F 1.39894 * 109.47290 * 180.02562 * 23 20 19 26 26 F 1.39901 * 109.47213 * 300.00633 * 23 20 19 27 27 C 1.39802 * 119.54238 * 359.97438 * 17 16 15 28 28 H 0.96999 * 120.00325 * 0.02562 * 1 2 3 29 29 H 1.08005 * 125.38285 * 0.02562 * 10 9 7 30 30 H 1.08003 * 119.93141 * 359.97438 * 14 13 11 31 31 H 1.08005 * 119.64302 * 180.02562 * 15 14 13 32 32 H 1.08006 * 119.92172 * 179.72357 * 16 15 14 33 33 H 0.96999 * 120.00149 * 175.76173 * 18 17 16 34 34 H 1.08998 * 109.47356 * 300.00387 * 19 18 17 35 35 H 1.09012 * 109.46798 * 59.99805 * 19 18 17 36 36 H 0.96701 * 114.00056 * 59.99629 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3107 0.0000 0.0000 3 14 2.2447 1.6178 0.0000 4 1 3.7048 1.3465 0.0006 5 1 1.8861 2.3965 -1.2125 6 1 1.8860 2.3964 1.2126 7 6 2.0092 -1.2096 -0.0005 8 1 3.0892 -1.2095 -0.0001 9 6 1.3046 -2.4299 -0.0016 10 6 -0.0074 -2.6362 -0.4101 11 7 -0.3217 -3.9472 -0.2591 12 1 -1.1826 -4.3374 -0.4773 13 6 0.7540 -4.6497 0.2483 14 6 0.9377 -5.9903 0.5752 15 6 2.1488 -6.4215 1.0751 16 6 3.1949 -5.5327 1.2590 17 6 3.0346 -4.1926 0.9401 18 7 4.0863 -3.2965 1.1250 19 6 5.3345 -3.7496 1.7439 20 6 6.3163 -2.5792 1.8279 21 1 6.4543 -2.1487 0.8361 22 8 5.7962 -1.5836 2.7112 23 6 7.6616 -3.0790 2.3585 24 9 8.1708 -4.0538 1.4937 25 9 8.5591 -2.0088 2.4359 26 9 7.4846 -3.6317 3.6315 27 6 1.8110 -3.7465 0.4319 28 1 -0.4850 0.8400 -0.0004 29 1 -0.6720 -1.8734 -0.7880 30 1 0.1302 -6.6941 0.4373 31 1 2.2828 -7.4635 1.3258 32 1 4.1364 -5.8834 1.6554 33 1 3.9918 -2.3729 0.8440 34 1 5.1281 -4.1238 2.7466 35 1 5.7705 -4.5466 1.1413 36 1 5.6481 -1.8973 3.6139 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169458796.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:43:28 Heat of formation + Delta-G solvation = -171.163873 kcal Electronic energy + Delta-G solvation = -26206.414914 eV Core-core repulsion = 21853.580182 eV Total energy + Delta-G solvation = -4352.834731 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 314.098 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -51.22151 -48.72237 -48.70233 -41.36267 -39.28430 -37.69708 -35.87824 -34.92249 -32.36271 -30.94448 -29.51910 -28.98465 -26.77411 -25.96555 -23.63996 -22.69728 -21.92073 -21.26062 -19.78222 -19.69188 -19.45059 -19.00582 -17.67250 -17.14625 -17.00828 -16.82738 -16.39581 -16.01989 -15.53252 -15.49414 -15.40504 -15.12277 -15.07061 -14.90356 -14.83727 -14.80165 -14.35121 -14.26744 -14.04909 -14.01061 -13.14587 -12.97600 -12.92063 -12.65196 -12.40693 -12.24822 -12.01694 -11.64170 -11.58947 -11.44156 -11.10186 -10.69790 -9.18585 -8.66699 -8.35958 -7.71438 -5.92242 0.85139 1.14985 1.41200 1.43856 1.44263 1.56062 2.30593 2.34772 2.40097 2.61576 2.82183 2.93892 3.04082 3.25512 3.33049 3.54528 3.68295 3.87076 4.36967 4.42713 4.55089 4.58633 4.69922 4.91770 5.04161 5.22840 5.35865 5.43091 5.60886 5.82528 5.98634 6.07912 6.13249 6.30867 6.52189 6.76101 6.88631 6.97824 7.18229 7.29673 7.47196 8.66775 Molecular weight = 314.10amu Principal moments of inertia in cm(-1) A = 0.010990 B = 0.005412 C = 0.003759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2547.193431 B = 5172.386520 C = 7446.577303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.019 3.981 3 Si 0.973 3.027 4 H -0.258 1.258 5 H -0.274 1.274 6 H -0.278 1.278 7 C -0.452 4.452 8 H 0.070 0.930 9 C 0.001 3.999 10 C -0.107 4.107 11 N -0.585 5.585 12 H 0.409 0.591 13 C 0.109 3.891 14 C -0.216 4.216 15 C -0.056 4.056 16 C -0.272 4.272 17 C 0.260 3.740 18 N -0.742 5.742 19 C 0.096 3.904 20 C 0.068 3.932 21 H 0.149 0.851 22 O -0.537 6.537 23 C 0.437 3.563 24 F -0.177 7.177 25 F -0.180 7.180 26 F -0.179 7.179 27 C -0.224 4.224 28 H 0.274 0.726 29 H 0.156 0.844 30 H 0.123 0.877 31 H 0.146 0.854 32 H 0.133 0.867 33 H 0.403 0.597 34 H 0.083 0.917 35 H 0.090 0.910 36 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.491 -7.437 4.631 14.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.189 4.189 3 Si 0.797 3.203 4 H -0.182 1.182 5 H -0.200 1.200 6 H -0.203 1.203 7 C -0.486 4.486 8 H 0.087 0.913 9 C -0.005 4.005 10 C -0.232 4.232 11 N -0.188 5.188 12 H 0.244 0.756 13 C -0.004 4.004 14 C -0.239 4.239 15 C -0.076 4.076 16 C -0.297 4.297 17 C 0.156 3.844 18 N -0.374 5.374 19 C -0.029 4.029 20 C 0.006 3.994 21 H 0.167 0.833 22 O -0.345 6.345 23 C 0.382 3.618 24 F -0.158 7.158 25 F -0.161 7.161 26 F -0.160 7.160 27 C -0.234 4.234 28 H 0.084 0.916 29 H 0.174 0.826 30 H 0.141 0.859 31 H 0.164 0.836 32 H 0.151 0.849 33 H 0.242 0.758 34 H 0.101 0.899 35 H 0.108 0.892 36 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 11.429 -6.926 4.163 13.997 hybrid contribution -0.312 0.826 0.280 0.926 sum 11.117 -6.100 4.443 13.436 Atomic orbital electron populations 1.69805 1.08208 1.28593 1.42865 1.26375 0.95635 1.03322 0.93540 0.85256 0.79448 0.77666 0.77938 1.18162 1.19982 1.20320 1.18795 0.93331 0.89952 1.46487 0.91251 1.18285 0.92888 0.90714 0.98588 1.22342 1.00192 0.83768 1.16858 1.41298 1.12361 1.07565 1.57535 0.75557 1.18387 0.87924 0.93496 1.00566 1.19939 1.00148 0.91353 1.12502 1.20652 0.91194 0.99425 0.96339 1.20370 1.01673 0.90735 1.16930 1.17362 0.85328 0.89890 0.91818 1.44640 1.12448 1.12404 1.67924 1.21961 0.84892 0.95614 1.00391 1.23312 0.87224 0.91518 0.97363 0.83311 1.86761 1.84949 1.36936 1.25849 1.21246 0.88818 0.75568 0.76185 1.93213 1.88913 1.63987 1.69716 1.93210 1.70689 1.56117 1.96116 1.93196 1.95407 1.86044 1.41381 1.19292 0.94679 0.95622 1.13806 0.91579 0.82645 0.85868 0.83588 0.84942 0.75810 0.89853 0.89201 0.74897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -46.56 10.80 21.79 0.24 -46.33 16 2 C 0.02 0.97 5.47 85.15 0.47 1.44 16 3 Si 0.97 40.50 29.56 68.60 2.03 42.53 16 4 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 5 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 6 H -0.28 -11.41 7.11 99.48 0.71 -10.70 16 7 C -0.45 -24.23 8.82 23.27 0.21 -24.03 16 8 H 0.07 3.52 5.65 -2.91 -0.02 3.50 16 9 C 0.00 0.05 5.98 -19.99 -0.12 -0.07 16 10 C -0.11 -5.60 10.77 84.27 0.91 -4.69 16 11 N -0.59 -25.85 5.99 -184.92 -1.11 -26.96 16 12 H 0.41 14.75 8.96 -92.70 -0.83 13.92 16 13 C 0.11 4.82 7.23 38.87 0.28 5.10 16 14 C -0.22 -7.81 10.07 22.43 0.23 -7.58 16 15 C -0.06 -1.80 10.00 22.26 0.22 -1.58 16 16 C -0.27 -9.18 9.32 22.44 0.21 -8.97 16 17 C 0.26 10.54 6.67 38.42 0.26 10.79 16 18 N -0.74 -26.00 5.67 -339.06 -1.92 -27.93 16 19 C 0.10 2.32 4.33 86.38 0.37 2.70 16 20 C 0.07 1.46 3.00 30.59 0.09 1.55 16 21 H 0.15 3.14 8.14 -2.39 -0.02 3.13 16 22 O -0.54 -12.85 13.23 -148.98 -1.97 -14.82 16 23 C 0.44 8.54 2.85 71.98 0.21 8.75 16 24 F -0.18 -3.51 16.71 44.97 0.75 -2.76 16 25 F -0.18 -3.93 17.26 44.97 0.78 -3.16 16 26 F -0.18 -3.38 16.51 44.97 0.74 -2.64 16 27 C -0.22 -10.83 6.27 -19.95 -0.13 -10.95 16 28 H 0.27 13.69 8.30 -92.71 -0.77 12.92 16 29 H 0.16 8.50 6.36 -2.91 -0.02 8.48 16 30 H 0.12 3.73 8.06 -2.91 -0.02 3.70 16 31 H 0.15 3.46 8.06 -2.91 -0.02 3.43 16 32 H 0.13 3.61 6.73 -2.91 -0.02 3.59 16 33 H 0.40 15.86 5.48 -92.71 -0.51 15.36 16 34 H 0.08 1.82 7.90 -2.39 -0.02 1.80 16 35 H 0.09 1.95 7.31 -2.38 -0.02 1.93 16 36 H 0.40 6.86 8.69 -74.06 -0.64 6.22 16 Total: -1.00 -64.30 317.47 1.94 -62.36 By element: Atomic # 1 Polarization: 48.04 SS G_CDS: -0.79 Total: 47.25 kcal Atomic # 6 Polarization: -30.75 SS G_CDS: 3.20 Total: -27.55 kcal Atomic # 7 Polarization: -98.42 SS G_CDS: -2.79 Total: -101.21 kcal Atomic # 8 Polarization: -12.85 SS G_CDS: -1.97 Total: -14.82 kcal Atomic # 9 Polarization: -10.83 SS G_CDS: 2.27 Total: -8.56 kcal Atomic # 14 Polarization: 40.50 SS G_CDS: 2.03 Total: 42.53 kcal Total: -64.30 1.94 -62.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169458796.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.802 kcal (2) G-P(sol) polarization free energy of solvation -64.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds