Wall clock time and date at job start Tue Mar 31 2020 11:00:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43194 * 179.97438 * 2 1 4 4 C 1.39692 * 120.17208 * 312.81217 * 3 2 1 5 5 C 1.37872 * 119.87530 * 180.02562 * 4 3 2 6 6 C 1.38451 * 120.21609 * 0.02562 * 5 4 3 7 7 C 1.50699 * 119.82856 * 179.97438 * 6 5 4 8 8 N 1.46508 * 109.46883 * 89.99651 * 7 6 5 9 9 C 1.39885 * 119.99980 * 180.02562 * 8 7 6 10 10 C 1.39096 * 119.96058 * 0.02602 * 9 8 7 11 11 C 1.38622 * 120.46895 * 179.97438 * 10 9 8 12 12 C 1.37575 * 120.38147 * 359.71994 * 11 10 9 13 13 C 1.40781 * 119.90976 * 0.55690 * 12 11 10 14 14 C 1.41323 * 120.22802 * 179.72175 * 13 12 11 15 15 H 1.07999 * 119.99919 * 150.02525 * 14 13 12 16 16 C 1.39921 * 120.00135 * 329.74753 * 14 13 12 17 17 N 1.30846 * 120.00222 * 161.88076 * 16 14 13 18 18 Si 1.86803 * 119.99658 * 341.88363 * 16 14 13 19 19 H 1.48501 * 109.47221 * 95.39109 * 18 16 14 20 20 H 1.48506 * 109.46781 * 215.38887 * 18 16 14 21 21 H 1.48499 * 109.47165 * 335.38800 * 18 16 14 22 22 C 1.38587 * 119.96183 * 180.02562 * 9 8 7 23 23 F 1.35098 * 120.19069 * 0.02562 * 22 9 8 24 24 C 1.38237 * 120.34462 * 0.25354 * 6 5 4 25 25 C 1.38282 * 120.12265 * 359.48813 * 24 6 5 26 26 F 1.35099 * 120.10765 * 180.23301 * 25 24 6 27 27 H 1.08005 * 120.06468 * 0.02562 * 4 3 2 28 28 H 1.07994 * 119.89620 * 179.97438 * 5 4 3 29 29 H 1.09000 * 109.47139 * 330.00412 * 7 6 5 30 30 H 1.08993 * 109.47528 * 209.99890 * 7 6 5 31 31 H 0.96998 * 119.99857 * 0.02562 * 8 7 6 32 32 H 1.08005 * 119.76569 * 359.95819 * 10 9 8 33 33 H 1.07999 * 119.80661 * 179.97438 * 11 10 9 34 34 H 1.08005 * 120.04633 * 180.27704 * 12 11 10 35 35 H 0.97005 * 119.99843 * 180.02562 * 17 16 14 36 36 H 1.08002 * 119.93453 * 179.74933 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2704 -0.8198 0.8859 5 6 4.6491 -0.8139 0.8811 6 6 5.3393 0.0027 0.0015 7 6 6.8463 0.0026 0.0040 8 7 7.3361 -1.0104 -0.9343 9 6 8.7117 -1.1983 -1.1054 10 6 9.6137 -0.4234 -0.3839 11 6 10.9791 -0.6011 -0.5448 12 6 11.4591 -1.5509 -1.4166 13 6 10.5605 -2.3401 -2.1594 14 6 11.0463 -3.3137 -3.0612 15 1 10.4680 -4.2045 -3.2572 16 6 12.2737 -3.1209 -3.7046 17 7 12.8944 -4.1366 -4.2479 18 14 13.0264 -1.4132 -3.7878 19 1 13.9951 -1.2444 -2.6750 20 1 13.7287 -1.2446 -5.0854 21 1 11.9537 -0.3931 -3.6693 22 6 9.1742 -2.1564 -1.9936 23 9 8.3001 -2.9100 -2.6959 24 6 4.6533 0.8224 -0.8751 25 6 3.2705 0.8238 -0.8860 26 9 2.6004 1.6216 -1.7460 27 1 2.7345 -1.4575 1.5734 28 1 5.1925 -1.4477 1.5661 29 1 7.2079 -0.2258 1.0066 30 1 7.2103 0.9844 -0.2986 31 1 6.7066 -1.5507 -1.4368 32 1 9.2478 0.3223 0.3065 33 1 11.6699 0.0068 0.0206 34 1 12.5239 -1.6879 -1.5345 35 1 13.7455 -4.0029 -4.6936 36 1 5.1984 1.4597 -1.5556 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170094648.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:50 Heat of formation + Delta-G solvation = -16.258831 kcal Electronic energy + Delta-G solvation = -23785.800098 eV Core-core repulsion = 19870.451778 eV Total energy + Delta-G solvation = -3915.348320 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 314.093 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.41761 -47.28879 -39.92860 -37.99455 -36.95585 -35.43970 -33.54455 -32.14445 -31.16593 -30.10024 -28.64485 -26.05840 -25.24544 -23.38403 -22.76948 -21.16926 -20.53816 -19.60497 -17.80068 -17.42274 -17.09990 -16.48285 -16.20304 -16.02632 -15.28109 -15.04666 -14.80140 -14.66249 -14.30861 -14.13491 -14.07501 -13.88736 -13.55863 -13.47748 -13.29144 -12.91529 -12.80324 -12.40013 -12.24816 -12.03685 -11.96104 -11.61185 -11.43182 -11.06767 -10.83506 -10.58460 -9.92155 -9.82202 -9.52987 -9.42735 -9.21315 -9.05347 -7.63329 -7.03151 -6.62970 -4.57822 0.09991 0.67334 2.22053 2.41168 2.45272 2.63428 3.07412 3.18012 3.22268 3.29148 3.33093 3.59340 3.93470 3.98320 4.19209 4.31611 4.40960 4.67286 4.74054 5.13882 5.19204 5.28634 5.38287 5.51519 5.58414 5.62166 5.69159 5.89101 6.03598 6.22961 6.29273 6.40301 6.62255 6.79392 7.04036 7.06559 7.38599 7.44060 7.57070 7.74203 8.07216 8.19325 8.31047 8.57526 8.70540 9.98511 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.026629 B = 0.002694 C = 0.002648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.252055 B =10390.580975 C =10571.434140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.405 5.405 2 C 0.254 3.746 3 C -0.063 4.063 4 C -0.043 4.043 5 C -0.111 4.111 6 C -0.038 4.038 7 C 0.169 3.831 8 N -0.754 5.754 9 C 0.215 3.785 10 C -0.288 4.288 11 C -0.050 4.050 12 C -0.254 4.254 13 C 0.098 3.902 14 C -0.436 4.436 15 H 0.094 0.906 16 C 0.085 3.915 17 N -0.800 5.800 18 Si 0.915 3.085 19 H -0.268 1.268 20 H -0.291 1.291 21 H -0.242 1.242 22 C -0.081 4.081 23 F -0.161 7.161 24 C -0.135 4.135 25 C 0.146 3.854 26 F -0.127 7.127 27 H 0.145 0.855 28 H 0.146 0.854 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.397 0.603 32 H 0.102 0.898 33 H 0.099 0.901 34 H 0.105 0.895 35 H 0.287 0.713 36 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.010 9.062 9.299 17.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.080 5.080 2 C -0.062 4.062 3 C -0.067 4.067 4 C -0.064 4.064 5 C -0.130 4.130 6 C -0.039 4.039 7 C 0.045 3.955 8 N -0.389 5.389 9 C 0.115 3.885 10 C -0.311 4.311 11 C -0.069 4.069 12 C -0.275 4.275 13 C 0.093 3.907 14 C -0.464 4.464 15 H 0.112 0.888 16 C -0.135 4.135 17 N -0.423 5.423 18 Si 0.741 3.259 19 H -0.194 1.194 20 H -0.218 1.218 21 H -0.165 1.165 22 C -0.106 4.106 23 F -0.140 7.140 24 C -0.154 4.154 25 C 0.124 3.876 26 F -0.105 7.105 27 H 0.163 0.837 28 H 0.163 0.837 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.232 0.768 32 H 0.120 0.880 33 H 0.117 0.883 34 H 0.123 0.877 35 H 0.098 0.902 36 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -12.636 9.047 9.210 18.065 hybrid contribution 0.374 0.399 -0.631 0.835 sum -12.262 9.446 8.579 17.697 Atomic orbital electron populations 1.81255 1.11790 1.07579 1.07423 1.25352 0.92336 0.94226 0.94252 1.16020 0.84969 1.03568 1.02155 1.21109 0.94116 0.95464 0.95666 1.21192 0.93294 0.98954 0.99514 1.20156 0.96590 0.93664 0.93519 1.20119 0.86764 0.93668 0.94959 1.44274 1.03993 1.42274 1.48337 1.17434 0.82626 0.94244 0.94244 1.19746 0.92370 1.08445 1.10521 1.20403 0.94192 0.95952 0.96402 1.20740 0.98051 1.04367 1.04312 1.17480 0.89237 0.91691 0.92269 1.19410 1.02311 1.04617 1.20037 0.88832 1.26192 0.95269 0.99319 0.92737 1.69699 1.13822 1.32560 1.26250 0.86249 0.79957 0.82856 0.76817 1.19423 1.21822 1.16520 1.17123 0.87178 1.01386 1.04886 1.91247 1.68522 1.75757 1.78478 1.21114 0.91249 1.01924 1.01148 1.17600 0.90001 0.90815 0.89225 1.91563 1.80469 1.71033 1.67450 0.83716 0.83655 0.90978 0.91219 0.76841 0.87994 0.88301 0.87740 0.90229 0.83178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -5.13 18.54 41.84 0.78 -4.35 16 2 C 0.25 2.66 14.98 -22.48 -0.34 2.32 16 3 C -0.06 -0.53 5.74 -106.82 -0.61 -1.14 16 4 C -0.04 -0.28 9.76 -39.17 -0.38 -0.66 16 5 C -0.11 -0.75 9.68 -39.64 -0.38 -1.14 16 6 C -0.04 -0.31 5.25 -104.54 -0.55 -0.86 16 7 C 0.17 1.74 5.03 -5.19 -0.03 1.71 16 8 N -0.75 -11.06 5.73 -59.78 -0.34 -11.40 16 9 C 0.21 4.13 6.65 -83.74 -0.56 3.57 16 10 C -0.29 -5.27 9.32 -39.12 -0.36 -5.63 16 11 C -0.05 -0.99 10.01 -39.68 -0.40 -1.39 16 12 C -0.25 -5.78 7.17 -38.86 -0.28 -6.06 16 13 C 0.10 2.43 5.10 -106.79 -0.54 1.88 16 14 C -0.44 -11.72 9.26 -37.78 -0.35 -12.07 16 15 H 0.09 2.70 7.97 -52.49 -0.42 2.28 16 16 C 0.08 2.18 5.40 -17.34 -0.09 2.09 16 17 N -0.80 -20.87 13.93 55.55 0.77 -20.09 16 18 Si 0.92 20.10 24.53 -169.99 -4.17 15.93 16 19 H -0.27 -5.62 6.71 56.52 0.38 -5.25 16 20 H -0.29 -6.18 7.11 56.52 0.40 -5.78 16 21 H -0.24 -5.43 6.87 56.52 0.39 -5.04 16 22 C -0.08 -1.88 7.31 -38.48 -0.28 -2.16 16 23 F -0.16 -3.76 16.13 2.25 0.04 -3.72 16 24 C -0.14 -1.13 9.66 -39.57 -0.38 -1.51 16 25 C 0.15 1.32 7.28 -38.96 -0.28 1.03 16 26 F -0.13 -1.33 16.81 2.25 0.04 -1.29 16 27 H 0.15 0.62 8.06 -52.48 -0.42 0.20 16 28 H 0.15 0.79 8.06 -52.49 -0.42 0.37 16 29 H 0.07 0.69 7.88 -51.93 -0.41 0.28 16 30 H 0.07 0.70 7.88 -51.93 -0.41 0.29 16 31 H 0.40 5.76 7.94 -40.82 -0.32 5.44 16 32 H 0.10 1.55 6.70 -52.48 -0.35 1.19 16 33 H 0.10 1.64 8.06 -52.49 -0.42 1.22 16 34 H 0.10 2.36 4.78 -52.48 -0.25 2.11 16 35 H 0.29 6.73 8.30 -40.82 -0.34 6.39 16 36 H 0.15 1.15 8.06 -52.49 -0.42 0.72 16 LS Contribution 327.63 15.07 4.94 4.94 Total: -1.00 -28.78 327.63 -6.80 -35.57 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: -3.02 Total: 4.43 kcal Atomic # 6 Polarization: -14.18 SS G_CDS: -5.82 Total: -20.00 kcal Atomic # 7 Polarization: -37.05 SS G_CDS: 1.21 Total: -35.84 kcal Atomic # 9 Polarization: -5.09 SS G_CDS: 0.07 Total: -5.02 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -4.17 Total: 15.93 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -28.78 -6.80 -35.57 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170094648.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.316 kcal (2) G-P(sol) polarization free energy of solvation -28.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds