Wall clock time and date at job start Tue Mar 31 2020 11:00:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43194 * 179.97438 * 2 1 4 4 C 1.39692 * 120.17208 * 312.81217 * 3 2 1 5 5 C 1.37872 * 119.87530 * 180.02562 * 4 3 2 6 6 C 1.38451 * 120.21609 * 0.02562 * 5 4 3 7 7 C 1.50699 * 119.82856 * 179.97438 * 6 5 4 8 8 N 1.46508 * 109.46883 * 89.99651 * 7 6 5 9 9 C 1.39885 * 119.99980 * 180.02562 * 8 7 6 10 10 C 1.39096 * 119.96058 * 0.02602 * 9 8 7 11 11 C 1.38622 * 120.46895 * 179.97438 * 10 9 8 12 12 C 1.37575 * 120.38147 * 359.71994 * 11 10 9 13 13 C 1.40781 * 119.90976 * 0.55690 * 12 11 10 14 14 C 1.41323 * 120.22802 * 179.72175 * 13 12 11 15 15 H 1.07999 * 119.99919 * 150.02525 * 14 13 12 16 16 C 1.39921 * 120.00135 * 329.74753 * 14 13 12 17 17 N 1.30846 * 120.00222 * 161.88076 * 16 14 13 18 18 Si 1.86803 * 119.99658 * 341.88363 * 16 14 13 19 19 H 1.48501 * 109.47221 * 95.39109 * 18 16 14 20 20 H 1.48506 * 109.46781 * 215.38887 * 18 16 14 21 21 H 1.48499 * 109.47165 * 335.38800 * 18 16 14 22 22 C 1.38587 * 119.96183 * 180.02562 * 9 8 7 23 23 F 1.35098 * 120.19069 * 0.02562 * 22 9 8 24 24 C 1.38237 * 120.34462 * 0.25354 * 6 5 4 25 25 C 1.38282 * 120.12265 * 359.48813 * 24 6 5 26 26 F 1.35099 * 120.10765 * 180.23301 * 25 24 6 27 27 H 1.08005 * 120.06468 * 0.02562 * 4 3 2 28 28 H 1.07994 * 119.89620 * 179.97438 * 5 4 3 29 29 H 1.09000 * 109.47139 * 330.00412 * 7 6 5 30 30 H 1.08993 * 109.47528 * 209.99890 * 7 6 5 31 31 H 0.96998 * 119.99857 * 0.02562 * 8 7 6 32 32 H 1.08005 * 119.76569 * 359.95819 * 10 9 8 33 33 H 1.07999 * 119.80661 * 179.97438 * 11 10 9 34 34 H 1.08005 * 120.04633 * 180.27704 * 12 11 10 35 35 H 0.97005 * 119.99843 * 180.02562 * 17 16 14 36 36 H 1.08002 * 119.93453 * 179.74933 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2704 -0.8198 0.8859 5 6 4.6491 -0.8139 0.8811 6 6 5.3393 0.0027 0.0015 7 6 6.8463 0.0026 0.0040 8 7 7.3361 -1.0104 -0.9343 9 6 8.7117 -1.1983 -1.1054 10 6 9.6137 -0.4234 -0.3839 11 6 10.9791 -0.6011 -0.5448 12 6 11.4591 -1.5509 -1.4166 13 6 10.5605 -2.3401 -2.1594 14 6 11.0463 -3.3137 -3.0612 15 1 10.4680 -4.2045 -3.2572 16 6 12.2737 -3.1209 -3.7046 17 7 12.8944 -4.1366 -4.2479 18 14 13.0264 -1.4132 -3.7878 19 1 13.9951 -1.2444 -2.6750 20 1 13.7287 -1.2446 -5.0854 21 1 11.9537 -0.3931 -3.6693 22 6 9.1742 -2.1564 -1.9936 23 9 8.3001 -2.9100 -2.6959 24 6 4.6533 0.8224 -0.8751 25 6 3.2705 0.8238 -0.8860 26 9 2.6004 1.6216 -1.7460 27 1 2.7345 -1.4575 1.5734 28 1 5.1925 -1.4477 1.5661 29 1 7.2079 -0.2258 1.0066 30 1 7.2103 0.9844 -0.2986 31 1 6.7066 -1.5507 -1.4368 32 1 9.2478 0.3223 0.3065 33 1 11.6699 0.0068 0.0206 34 1 12.5239 -1.6879 -1.5345 35 1 13.7455 -4.0029 -4.6936 36 1 5.1984 1.4597 -1.5556 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170094648.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:49 Heat of formation + Delta-G solvation = -32.360028 kcal Electronic energy + Delta-G solvation = -23786.498299 eV Core-core repulsion = 19870.451778 eV Total energy + Delta-G solvation = -3916.046520 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 314.093 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -50.15635 -49.08807 -40.62039 -39.49290 -37.88196 -36.73748 -35.19335 -33.15533 -31.83399 -31.73123 -29.92440 -27.18786 -26.94043 -23.99723 -23.70931 -22.74363 -22.08779 -20.29729 -19.38643 -18.51912 -18.02946 -17.79677 -17.32069 -16.99009 -16.85495 -16.35958 -16.05979 -15.87235 -15.46456 -15.22288 -15.03511 -14.93329 -14.79550 -14.59927 -14.45383 -14.16222 -13.84958 -13.73367 -13.58350 -13.21319 -13.13426 -12.76481 -12.70615 -12.57733 -12.19590 -12.13237 -11.65825 -11.56412 -11.06448 -10.58797 -10.16746 -9.87065 -9.36882 -8.89275 -8.07086 -6.51634 -0.57773 0.08903 0.76474 0.98190 1.31423 1.40762 1.46398 1.55753 1.66127 2.16939 2.46167 2.60122 2.63962 2.88893 2.96680 3.47917 3.50336 3.70534 4.01435 4.09102 4.13222 4.42721 4.47611 4.58639 4.63275 4.76179 4.82622 4.89435 4.96196 5.00686 5.05876 5.11644 5.39754 5.47797 5.63174 5.72007 5.80025 5.95623 6.01959 6.24019 6.30628 6.57889 6.73829 6.80343 6.97862 8.19598 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.026629 B = 0.002694 C = 0.002648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.252055 B =10390.580975 C =10571.434140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C 0.273 3.727 3 C -0.068 4.068 4 C -0.030 4.030 5 C -0.101 4.101 6 C -0.039 4.039 7 C 0.165 3.835 8 N -0.747 5.747 9 C 0.227 3.773 10 C -0.264 4.264 11 C -0.045 4.045 12 C -0.274 4.274 13 C 0.078 3.922 14 C -0.484 4.484 15 H 0.045 0.955 16 C 0.045 3.955 17 N -0.850 5.850 18 Si 0.974 3.026 19 H -0.248 1.248 20 H -0.282 1.282 21 H -0.249 1.249 22 C -0.116 4.116 23 F -0.173 7.173 24 C -0.133 4.133 25 C 0.132 3.868 26 F -0.140 7.140 27 H 0.171 0.829 28 H 0.167 0.833 29 H 0.093 0.907 30 H 0.083 0.917 31 H 0.397 0.603 32 H 0.150 0.850 33 H 0.141 0.859 34 H 0.101 0.899 35 H 0.295 0.705 36 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.199 12.014 12.321 20.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.126 5.126 2 C -0.042 4.042 3 C -0.073 4.073 4 C -0.050 4.050 5 C -0.119 4.119 6 C -0.041 4.041 7 C 0.042 3.958 8 N -0.378 5.378 9 C 0.123 3.877 10 C -0.287 4.287 11 C -0.064 4.064 12 C -0.294 4.294 13 C 0.074 3.926 14 C -0.513 4.513 15 H 0.063 0.937 16 C -0.169 4.169 17 N -0.476 5.476 18 Si 0.796 3.204 19 H -0.173 1.173 20 H -0.209 1.209 21 H -0.172 1.172 22 C -0.141 4.141 23 F -0.153 7.153 24 C -0.152 4.152 25 C 0.110 3.890 26 F -0.119 7.119 27 H 0.188 0.812 28 H 0.185 0.815 29 H 0.111 0.889 30 H 0.101 0.899 31 H 0.231 0.769 32 H 0.167 0.833 33 H 0.158 0.842 34 H 0.119 0.881 35 H 0.105 0.895 36 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -12.873 12.009 12.258 21.452 hybrid contribution 0.171 -0.412 -1.349 1.421 sum -12.701 11.597 10.909 20.367 Atomic orbital electron populations 1.81271 1.13128 1.09171 1.08990 1.25649 0.92650 0.92936 0.92962 1.16156 0.83885 1.04327 1.02909 1.21380 0.94130 0.94545 0.94916 1.21435 0.93312 0.98162 0.98999 1.20011 0.95587 0.94319 0.94156 1.20396 0.87918 0.92777 0.94717 1.44486 1.02145 1.42708 1.48495 1.17536 0.85140 0.92444 0.92540 1.20333 0.91670 1.07513 1.09180 1.20894 0.95706 0.94782 0.94978 1.20841 0.97695 1.05463 1.05419 1.17685 0.90714 0.91928 0.92240 1.19308 1.03587 1.04821 1.23616 0.93696 1.26942 0.95248 1.02740 0.91975 1.69740 1.14956 1.34299 1.28564 0.85368 0.79216 0.78040 0.77760 1.17280 1.20879 1.17210 1.17565 0.86902 1.02991 1.06617 1.91204 1.68642 1.76369 1.79049 1.21159 0.90852 1.02009 1.01186 1.17743 0.90392 0.91289 0.89579 1.91531 1.80788 1.71555 1.68023 0.81151 0.81516 0.88859 0.89933 0.76871 0.83266 0.84154 0.88099 0.89480 0.82649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -11.15 18.54 19.00 0.35 -10.79 16 2 C 0.27 5.37 14.98 88.33 1.32 6.70 16 3 C -0.07 -1.00 5.74 -21.29 -0.12 -1.12 16 4 C -0.03 -0.27 9.76 22.53 0.22 -0.05 16 5 C -0.10 -0.90 9.68 22.23 0.22 -0.68 16 6 C -0.04 -0.48 5.25 -19.81 -0.10 -0.58 16 7 C 0.16 2.49 5.03 85.63 0.43 2.92 16 8 N -0.75 -19.01 5.73 -343.06 -1.97 -20.97 16 9 C 0.23 7.99 6.65 38.15 0.25 8.24 16 10 C -0.26 -8.20 9.32 22.57 0.21 -7.99 16 11 C -0.04 -1.56 10.01 22.20 0.22 -1.33 16 12 C -0.27 -12.02 7.17 22.74 0.16 -11.86 16 13 C 0.08 3.96 5.10 -21.27 -0.11 3.85 16 14 C -0.48 -27.88 9.26 23.44 0.22 -27.67 16 15 H 0.04 2.88 7.97 -2.91 -0.02 2.86 16 16 C 0.05 2.45 5.40 85.25 0.46 2.91 16 17 N -0.85 -47.09 13.93 21.82 0.30 -46.79 16 18 Si 0.97 41.92 24.53 68.60 1.68 43.60 16 19 H -0.25 -9.74 6.71 99.48 0.67 -9.07 16 20 H -0.28 -11.51 7.11 99.48 0.71 -10.80 16 21 H -0.25 -10.79 6.87 99.48 0.68 -10.10 16 22 C -0.12 -5.37 7.31 22.99 0.17 -5.20 16 23 F -0.17 -8.40 16.13 44.97 0.73 -7.67 16 24 C -0.13 -1.81 9.66 22.28 0.22 -1.60 16 25 C 0.13 2.12 7.28 22.67 0.17 2.29 16 26 F -0.14 -2.83 16.81 44.97 0.76 -2.07 16 27 H 0.17 0.70 8.06 -2.91 -0.02 0.68 16 28 H 0.17 0.86 8.06 -2.91 -0.02 0.84 16 29 H 0.09 1.13 7.88 -2.39 -0.02 1.11 16 30 H 0.08 1.13 7.88 -2.39 -0.02 1.12 16 31 H 0.40 10.43 7.94 -92.71 -0.74 9.69 16 32 H 0.15 3.30 6.70 -2.91 -0.02 3.28 16 33 H 0.14 3.74 8.06 -2.91 -0.02 3.72 16 34 H 0.10 4.44 4.78 -2.91 -0.01 4.43 16 35 H 0.29 14.54 8.30 -92.70 -0.77 13.78 16 36 H 0.16 1.92 8.06 -2.91 -0.02 1.90 16 Total: -1.00 -68.59 327.63 6.15 -62.44 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: 0.36 Total: 13.43 kcal Atomic # 6 Polarization: -35.10 SS G_CDS: 3.93 Total: -31.17 kcal Atomic # 7 Polarization: -77.25 SS G_CDS: -1.31 Total: -78.56 kcal Atomic # 9 Polarization: -11.22 SS G_CDS: 1.48 Total: -9.74 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 1.68 Total: 43.60 kcal Total: -68.59 6.15 -62.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170094648.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.082 kcal (2) G-P(sol) polarization free energy of solvation -68.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds