Wall clock time and date at job start Tue Mar 31 2020 11:15:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38287 * 119.94385 * 2 1 4 4 C 1.38275 * 120.15335 * 180.27978 * 3 2 1 5 5 C 1.38305 * 120.04320 * 359.48686 * 4 3 2 6 6 F 1.35099 * 120.05291 * 180.23403 * 5 4 3 7 7 C 1.39042 * 119.89117 * 0.25706 * 5 4 3 8 8 N 1.40059 * 120.07646 * 180.02562 * 7 5 4 9 9 C 1.34776 * 120.00021 * 149.06666 * 8 7 5 10 10 O 1.21575 * 120.00063 * 7.12410 * 9 8 7 11 11 N 1.34776 * 120.00352 * 187.11871 * 9 8 7 12 12 C 1.38719 * 120.00406 * 184.22982 * 11 9 8 13 13 C 1.38853 * 119.99820 * 299.97348 * 12 11 9 14 14 H 1.08000 * 119.99509 * 152.97550 * 13 12 11 15 15 C 1.40912 * 119.99909 * 332.97847 * 13 12 11 16 16 N 1.30294 * 120.00432 * 359.87202 * 15 13 12 17 17 Si 1.86805 * 119.99882 * 179.86649 * 15 13 12 18 18 H 1.48508 * 109.46783 * 60.00121 * 17 15 13 19 19 H 1.48497 * 109.47232 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47123 * 300.00121 * 17 15 13 21 21 C 1.41069 * 120.00369 * 119.96986 * 12 11 9 22 22 C 1.43193 * 120.00515 * 185.31368 * 21 12 11 23 23 N 9.17860 * 96.94200 * 170.82421 * 2 1 3 24 24 C 1.43210 * 119.99575 * 5.31971 * 21 12 11 25 25 N 8.05920 * 115.50786 * 194.14854 * 2 1 3 26 26 C 1.38150 * 119.94897 * 179.77066 * 2 1 3 27 27 H 1.09004 * 109.46668 * 270.23111 * 1 2 3 28 28 H 1.08998 * 109.47523 * 30.22856 * 1 2 3 29 29 H 1.08993 * 109.47331 * 150.23244 * 1 2 3 30 30 H 1.08000 * 119.91980 * 0.02562 * 3 2 1 31 31 H 1.08001 * 119.97385 * 179.76931 * 4 3 2 32 32 H 0.96996 * 120.00499 * 329.07135 * 8 7 5 33 33 H 0.96999 * 119.99834 * 4.23402 * 11 9 8 34 34 H 0.96995 * 120.00528 * 185.01949 * 16 15 13 35 35 H 1.08002 * 120.01862 * 359.97438 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1972 1.1983 0.0000 4 6 3.5799 1.2033 -0.0058 5 6 4.2768 0.0087 -0.0010 6 9 5.6278 0.0134 -0.0019 7 6 3.5846 -1.1972 0.0044 8 7 4.2864 -2.4093 0.0099 9 6 3.7575 -3.4914 0.6147 10 8 2.6198 -3.4539 1.0416 11 7 4.4899 -4.6152 0.7462 12 6 3.9178 -5.7564 1.2890 13 6 3.4075 -5.7303 2.5801 14 1 2.6101 -6.4031 2.8592 15 6 3.9299 -4.8259 3.5261 16 7 4.8936 -4.0159 3.1900 17 14 3.2408 -4.7882 5.2619 18 1 3.4254 -6.1180 5.8968 19 1 3.9553 -3.7566 6.0559 20 1 1.7934 -4.4598 5.2129 21 6 3.8544 -6.9435 0.5295 22 6 3.1639 -8.0872 1.0446 23 7 2.6163 -8.9947 1.4529 24 6 4.4809 -7.0046 -0.7569 25 7 4.9775 -7.0530 -1.7779 26 6 2.1966 -1.1970 0.0048 27 1 -0.3633 0.0041 1.0277 28 1 -0.3634 0.8879 -0.5174 29 1 -0.3633 -0.8920 -0.5102 30 1 1.6550 2.1323 0.0004 31 1 4.1161 2.1409 -0.0096 32 1 5.1530 -2.4700 -0.4215 33 1 5.4170 -4.6260 0.4612 34 1 5.3027 -3.4449 3.8589 35 1 1.6561 -2.1320 0.0090 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185276045.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:27 Heat of formation + Delta-G solvation = 11.224192 kcal Electronic energy + Delta-G solvation = -24988.097758 eV Core-core repulsion = 21093.861153 eV Total energy + Delta-G solvation = -3894.236605 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 314.092 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -48.77532 -40.35286 -38.75602 -36.65288 -35.15580 -34.72560 -34.39900 -33.39240 -32.10835 -30.77744 -29.08450 -27.11908 -26.58225 -23.65114 -22.21820 -21.22733 -20.57298 -19.01017 -18.23179 -17.64209 -17.28246 -16.79960 -16.23100 -16.03143 -15.50458 -15.10644 -14.53718 -14.29259 -14.01354 -13.81306 -13.67531 -13.50327 -13.16373 -12.83012 -12.61282 -12.28798 -12.08476 -11.90479 -11.80899 -11.71557 -11.69800 -11.56141 -11.49136 -11.33602 -11.05097 -10.95087 -10.65503 -10.20940 -10.03340 -9.50889 -9.08245 -8.56489 -7.98982 -7.87251 -7.43127 -5.40589 1.19473 1.34850 2.06985 2.73924 2.77736 2.81245 3.06385 3.44596 3.54296 3.82477 3.91277 4.03405 4.16788 4.29670 4.31218 4.65848 4.76742 4.89435 5.16024 5.19358 5.28784 5.50235 5.57465 5.64500 5.75662 5.91210 6.06762 6.16885 6.23482 6.29966 6.37624 6.51540 6.68411 6.95055 7.07302 7.13421 7.19210 7.66633 7.73732 8.07375 8.40379 8.91015 9.07808 9.14695 9.23930 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.011961 B = 0.004885 C = 0.004313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2340.347428 B = 5730.595976 C = 6490.027705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.077 4.077 3 C -0.123 4.123 4 C -0.132 4.132 5 C 0.051 3.949 6 F -0.141 7.141 7 C 0.160 3.840 8 N -0.685 5.685 9 C 0.732 3.268 10 O -0.557 6.557 11 N -0.657 5.657 12 C 0.390 3.610 13 C -0.348 4.348 14 H 0.111 0.889 15 C 0.076 3.924 16 N -0.735 5.735 17 Si 0.933 3.067 18 H -0.253 1.253 19 H -0.270 1.270 20 H -0.251 1.251 21 C -0.310 4.310 22 C 0.327 3.673 23 N -0.532 5.532 24 C 0.309 3.691 25 N -0.536 5.536 26 C -0.105 4.105 27 H 0.072 0.928 28 H 0.065 0.935 29 H 0.069 0.931 30 H 0.127 0.873 31 H 0.134 0.866 32 H 0.407 0.593 33 H 0.396 0.604 34 H 0.301 0.699 35 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.240 15.597 0.455 15.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.078 4.078 3 C -0.142 4.142 4 C -0.151 4.151 5 C 0.029 3.971 6 F -0.120 7.120 7 C 0.062 3.938 8 N -0.331 5.331 9 C 0.434 3.566 10 O -0.432 6.432 11 N -0.304 5.304 12 C 0.287 3.713 13 C -0.376 4.376 14 H 0.129 0.871 15 C -0.154 4.154 16 N -0.354 5.354 17 Si 0.754 3.246 18 H -0.177 1.177 19 H -0.195 1.195 20 H -0.174 1.174 21 C -0.329 4.329 22 C 0.019 3.981 23 N -0.214 5.214 24 C 0.003 3.997 25 N -0.218 5.218 26 C -0.126 4.126 27 H 0.091 0.909 28 H 0.084 0.916 29 H 0.088 0.912 30 H 0.145 0.855 31 H 0.151 0.849 32 H 0.242 0.758 33 H 0.231 0.769 34 H 0.113 0.887 35 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -2.126 14.314 -0.046 14.471 hybrid contribution 1.296 0.596 0.705 1.591 sum -0.830 14.910 0.659 14.948 Atomic orbital electron populations 1.20760 0.90695 1.02754 1.02580 1.19897 0.96526 0.92416 0.98964 1.20783 0.92915 0.97882 1.02627 1.20846 0.94825 0.96192 1.03284 1.17436 0.76778 0.93305 1.09584 1.91458 1.28768 1.97308 1.94489 1.17522 0.91793 0.83375 1.01107 1.42428 1.23514 1.08299 1.58836 1.15294 0.84512 0.79112 0.77717 1.90847 1.17189 1.81640 1.53539 1.41799 1.14350 1.09909 1.64300 1.16483 0.84797 0.81361 0.88653 1.20199 1.13426 1.11439 0.92504 0.87103 1.26535 0.93499 0.91397 1.03933 1.69393 1.15168 1.12639 1.38194 0.85877 0.81015 0.80000 0.77675 1.17652 1.19462 1.17439 1.12844 1.31756 0.93065 0.95199 1.24599 0.90676 0.91125 0.91713 1.81050 1.17362 1.12091 1.10899 1.25225 0.90957 0.92224 0.91341 1.81092 1.18090 1.09437 1.13227 1.21490 0.91621 1.00080 0.99363 0.90949 0.91649 0.91162 0.85458 0.84854 0.75808 0.76879 0.88712 0.82000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.10 10.01 36.00 0.36 -0.74 16 2 C -0.08 -0.96 5.88 -104.64 -0.62 -1.58 16 3 C -0.12 -1.35 9.70 -39.55 -0.38 -1.73 16 4 C -0.13 -1.54 10.02 -39.54 -0.40 -1.94 16 5 C 0.05 0.72 7.31 -39.26 -0.29 0.43 16 6 F -0.14 -2.01 16.90 2.25 0.04 -1.97 16 7 C 0.16 2.50 6.39 -83.59 -0.53 1.97 16 8 N -0.68 -11.04 5.27 -14.17 -0.07 -11.12 16 9 C 0.73 14.04 7.06 -86.92 -0.61 13.42 16 10 O -0.56 -12.11 12.58 5.30 0.07 -12.05 16 11 N -0.66 -12.52 3.19 -13.98 -0.04 -12.57 16 12 C 0.39 8.28 5.50 -83.45 -0.46 7.82 16 13 C -0.35 -7.47 7.56 -38.34 -0.29 -7.76 16 14 H 0.11 2.42 7.12 -52.49 -0.37 2.05 16 15 C 0.08 1.52 5.11 -17.19 -0.09 1.43 16 16 N -0.73 -14.29 11.00 55.60 0.61 -13.68 16 17 Si 0.93 15.77 29.57 -169.99 -5.03 10.74 16 18 H -0.25 -4.26 7.11 56.52 0.40 -3.86 16 19 H -0.27 -4.40 7.11 56.52 0.40 -3.99 16 20 H -0.25 -4.39 7.11 56.52 0.40 -3.99 16 21 C -0.31 -6.81 5.88 -104.97 -0.62 -7.43 16 22 C 0.33 7.55 13.96 -22.48 -0.31 7.24 16 23 N -0.53 -12.73 18.54 41.83 0.78 -11.96 16 24 C 0.31 6.85 14.81 -22.45 -0.33 6.52 16 25 N -0.54 -12.22 18.54 41.86 0.78 -11.44 16 26 C -0.11 -1.62 8.41 -39.41 -0.33 -1.95 16 27 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.06 0.51 8.09 -51.93 -0.42 0.09 16 29 H 0.07 0.70 8.08 -51.93 -0.42 0.28 16 30 H 0.13 1.03 8.06 -52.49 -0.42 0.60 16 31 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 32 H 0.41 5.64 8.61 -40.82 -0.35 5.28 16 33 H 0.40 6.79 8.83 -40.82 -0.36 6.43 16 34 H 0.30 5.41 8.29 -40.82 -0.34 5.07 16 35 H 0.16 2.82 5.82 -52.49 -0.31 2.51 16 LS Contribution 333.59 15.07 5.03 5.03 Total: -1.00 -26.37 333.59 -5.38 -31.76 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: -2.63 Total: 11.55 kcal Atomic # 6 Polarization: 20.60 SS G_CDS: -4.90 Total: 15.70 kcal Atomic # 7 Polarization: -62.80 SS G_CDS: 2.04 Total: -60.76 kcal Atomic # 8 Polarization: -12.11 SS G_CDS: 0.07 Total: -12.05 kcal Atomic # 9 Polarization: -2.01 SS G_CDS: 0.04 Total: -1.97 kcal Atomic # 14 Polarization: 15.77 SS G_CDS: -5.03 Total: 10.74 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -26.37 -5.38 -31.76 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185276045.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.981 kcal (2) G-P(sol) polarization free energy of solvation -26.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.757 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds