Wall clock time and date at job start Tue Mar 31 2020 11:15:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38287 * 119.94385 * 2 1 4 4 C 1.38275 * 120.15335 * 180.27978 * 3 2 1 5 5 C 1.38305 * 120.04320 * 359.48686 * 4 3 2 6 6 F 1.35099 * 120.05291 * 180.23403 * 5 4 3 7 7 C 1.39042 * 119.89117 * 0.25706 * 5 4 3 8 8 N 1.40059 * 120.07646 * 180.02562 * 7 5 4 9 9 C 1.34776 * 120.00021 * 149.06666 * 8 7 5 10 10 O 1.21575 * 120.00063 * 7.12410 * 9 8 7 11 11 N 1.34776 * 120.00352 * 187.11871 * 9 8 7 12 12 C 1.38719 * 120.00406 * 184.22982 * 11 9 8 13 13 C 1.38853 * 119.99820 * 299.97348 * 12 11 9 14 14 H 1.08000 * 119.99509 * 152.97550 * 13 12 11 15 15 C 1.40912 * 119.99909 * 332.97847 * 13 12 11 16 16 N 1.30294 * 120.00432 * 359.87202 * 15 13 12 17 17 Si 1.86805 * 119.99882 * 179.86649 * 15 13 12 18 18 H 1.48508 * 109.46783 * 60.00121 * 17 15 13 19 19 H 1.48497 * 109.47232 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47123 * 300.00121 * 17 15 13 21 21 C 1.41069 * 120.00369 * 119.96986 * 12 11 9 22 22 C 1.43193 * 120.00515 * 185.31368 * 21 12 11 23 23 N 9.17860 * 96.94200 * 170.82421 * 2 1 3 24 24 C 1.43210 * 119.99575 * 5.31971 * 21 12 11 25 25 N 8.05920 * 115.50786 * 194.14854 * 2 1 3 26 26 C 1.38150 * 119.94897 * 179.77066 * 2 1 3 27 27 H 1.09004 * 109.46668 * 270.23111 * 1 2 3 28 28 H 1.08998 * 109.47523 * 30.22856 * 1 2 3 29 29 H 1.08993 * 109.47331 * 150.23244 * 1 2 3 30 30 H 1.08000 * 119.91980 * 0.02562 * 3 2 1 31 31 H 1.08001 * 119.97385 * 179.76931 * 4 3 2 32 32 H 0.96996 * 120.00499 * 329.07135 * 8 7 5 33 33 H 0.96999 * 119.99834 * 4.23402 * 11 9 8 34 34 H 0.96995 * 120.00528 * 185.01949 * 16 15 13 35 35 H 1.08002 * 120.01862 * 359.97438 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1972 1.1983 0.0000 4 6 3.5799 1.2033 -0.0058 5 6 4.2768 0.0087 -0.0010 6 9 5.6278 0.0134 -0.0019 7 6 3.5846 -1.1972 0.0044 8 7 4.2864 -2.4093 0.0099 9 6 3.7575 -3.4914 0.6147 10 8 2.6198 -3.4539 1.0416 11 7 4.4899 -4.6152 0.7462 12 6 3.9178 -5.7564 1.2890 13 6 3.4075 -5.7303 2.5801 14 1 2.6101 -6.4031 2.8592 15 6 3.9299 -4.8259 3.5261 16 7 4.8936 -4.0159 3.1900 17 14 3.2408 -4.7882 5.2619 18 1 3.4254 -6.1180 5.8968 19 1 3.9553 -3.7566 6.0559 20 1 1.7934 -4.4598 5.2129 21 6 3.8544 -6.9435 0.5295 22 6 3.1639 -8.0872 1.0446 23 7 2.6163 -8.9947 1.4529 24 6 4.4809 -7.0046 -0.7569 25 7 4.9775 -7.0530 -1.7779 26 6 2.1966 -1.1970 0.0048 27 1 -0.3633 0.0041 1.0277 28 1 -0.3634 0.8879 -0.5174 29 1 -0.3633 -0.8920 -0.5102 30 1 1.6550 2.1323 0.0004 31 1 4.1161 2.1409 -0.0096 32 1 5.1530 -2.4700 -0.4215 33 1 5.4170 -4.6260 0.4612 34 1 5.3027 -3.4449 3.8589 35 1 1.6561 -2.1320 0.0090 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185276045.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:27 Heat of formation + Delta-G solvation = -2.217835 kcal Electronic energy + Delta-G solvation = -24988.680648 eV Core-core repulsion = 21093.861153 eV Total energy + Delta-G solvation = -3894.819495 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 314.092 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.85324 -41.73037 -39.93934 -38.22473 -36.81562 -36.55024 -35.79460 -34.96316 -33.06948 -32.29032 -30.32302 -28.80433 -27.50402 -24.91908 -23.51499 -22.48840 -21.95576 -20.61936 -19.66853 -19.08978 -18.63146 -18.08734 -17.67287 -17.16250 -16.62510 -16.59357 -15.95447 -15.51696 -15.18212 -15.09601 -14.85815 -14.61616 -14.43577 -14.38063 -14.22682 -13.92317 -13.48936 -13.43603 -13.37286 -13.11717 -12.96601 -12.82834 -12.75036 -12.67312 -12.63562 -12.34567 -12.08274 -11.53646 -11.40016 -10.98256 -10.66938 -9.63197 -9.55000 -9.12213 -8.92567 -7.13190 0.16236 0.32113 0.47328 1.33465 1.43576 1.45475 1.69084 2.01839 2.05656 2.20256 2.23751 2.44187 2.63223 2.71980 3.20319 3.28009 3.39088 3.81411 3.84737 3.97043 4.29453 4.35667 4.51647 4.55303 4.66545 4.84893 4.89302 4.96046 5.15401 5.22690 5.33975 5.35281 5.42921 5.46577 5.68284 5.76891 6.04038 6.05703 6.11353 6.43875 6.97774 7.13408 7.30184 7.61748 7.70245 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.011961 B = 0.004885 C = 0.004313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2340.347428 B = 5730.595976 C = 6490.027705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.079 4.079 3 C -0.109 4.109 4 C -0.124 4.124 5 C 0.040 3.960 6 F -0.145 7.145 7 C 0.131 3.869 8 N -0.677 5.677 9 C 0.731 3.269 10 O -0.587 6.587 11 N -0.653 5.653 12 C 0.382 3.618 13 C -0.355 4.355 14 H 0.102 0.898 15 C 0.048 3.952 16 N -0.734 5.734 17 Si 0.984 3.016 18 H -0.251 1.251 19 H -0.254 1.254 20 H -0.262 1.262 21 C -0.321 4.321 22 C 0.330 3.670 23 N -0.553 5.553 24 C 0.317 3.683 25 N -0.550 5.550 26 C -0.129 4.129 27 H 0.076 0.924 28 H 0.094 0.906 29 H 0.061 0.939 30 H 0.168 0.832 31 H 0.165 0.835 32 H 0.415 0.585 33 H 0.404 0.596 34 H 0.311 0.689 35 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.297 18.543 1.245 18.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.080 4.080 3 C -0.128 4.128 4 C -0.143 4.143 5 C 0.018 3.982 6 F -0.124 7.124 7 C 0.035 3.965 8 N -0.324 5.324 9 C 0.432 3.568 10 O -0.464 6.464 11 N -0.300 5.300 12 C 0.278 3.722 13 C -0.382 4.382 14 H 0.120 0.880 15 C -0.182 4.182 16 N -0.353 5.353 17 Si 0.803 3.197 18 H -0.174 1.174 19 H -0.177 1.177 20 H -0.186 1.186 21 C -0.340 4.340 22 C 0.023 3.977 23 N -0.237 5.237 24 C 0.011 3.989 25 N -0.233 5.233 26 C -0.149 4.149 27 H 0.095 0.905 28 H 0.113 0.887 29 H 0.080 0.920 30 H 0.185 0.815 31 H 0.183 0.817 32 H 0.252 0.748 33 H 0.240 0.760 34 H 0.124 0.876 35 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -2.140 17.291 0.707 17.437 hybrid contribution 1.287 -0.158 0.473 1.380 sum -0.854 17.134 1.180 17.195 Atomic orbital electron populations 1.20825 0.88964 1.03807 1.03140 1.20226 0.97898 0.92005 0.97833 1.21229 0.92775 0.98665 1.00131 1.21272 0.95313 0.96363 1.01330 1.17633 0.76738 0.93561 1.10262 1.91446 1.29039 1.97336 1.94607 1.17765 0.92147 0.83520 1.03116 1.42247 1.23800 1.07951 1.58365 1.15406 0.84156 0.79522 0.77681 1.90829 1.18405 1.82269 1.54930 1.41694 1.14677 1.09489 1.64173 1.16499 0.85264 0.81732 0.88679 1.20375 1.13040 1.11693 0.93053 0.87990 1.27113 0.93722 0.91062 1.06302 1.69368 1.14637 1.11890 1.39366 0.85138 0.79804 0.80412 0.74348 1.17437 1.17694 1.18587 1.12869 1.32509 0.93212 0.95417 1.24783 0.90434 0.91082 0.91361 1.81029 1.18368 1.12674 1.11584 1.25207 0.90668 0.91849 0.91206 1.81082 1.18831 1.09878 1.13547 1.21382 0.91759 1.00314 1.01465 0.90535 0.88710 0.92040 0.81465 0.81733 0.74807 0.75980 0.87635 0.84841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.97 10.01 71.23 0.71 -1.26 16 2 C -0.08 -1.83 5.88 -19.88 -0.12 -1.95 16 3 C -0.11 -1.98 9.70 22.29 0.22 -1.77 16 4 C -0.12 -2.47 10.02 22.29 0.22 -2.25 16 5 C 0.04 1.07 7.31 22.48 0.16 1.23 16 6 F -0.15 -3.95 16.90 44.97 0.76 -3.19 16 7 C 0.13 4.10 6.39 38.15 0.24 4.34 16 8 N -0.68 -22.17 5.27 -317.02 -1.67 -23.84 16 9 C 0.73 28.61 7.06 179.05 1.26 29.88 16 10 O -0.59 -26.32 12.58 -3.95 -0.05 -26.37 16 11 N -0.65 -25.30 3.19 -316.42 -1.01 -26.31 16 12 C 0.38 16.50 5.50 38.89 0.21 16.71 16 13 C -0.35 -15.37 7.56 23.07 0.17 -15.20 16 14 H 0.10 4.54 7.12 -2.91 -0.02 4.52 16 15 C 0.05 1.87 5.11 85.58 0.44 2.30 16 16 N -0.73 -27.94 11.00 21.99 0.24 -27.70 16 17 Si 0.98 31.34 29.57 68.60 2.03 33.37 16 18 H -0.25 -7.88 7.11 99.48 0.71 -7.18 16 19 H -0.25 -7.37 7.11 99.48 0.71 -6.66 16 20 H -0.26 -8.77 7.11 99.48 0.71 -8.06 16 21 C -0.32 -14.38 5.88 -20.09 -0.12 -14.50 16 22 C 0.33 15.54 13.96 88.33 1.23 16.77 16 23 N -0.55 -26.88 18.54 19.00 0.35 -26.53 16 24 C 0.32 14.23 14.81 88.33 1.31 15.53 16 25 N -0.55 -25.26 18.54 19.01 0.35 -24.91 16 26 C -0.13 -4.00 8.41 22.38 0.19 -3.81 16 27 H 0.08 1.32 8.14 -2.38 -0.02 1.30 16 28 H 0.09 1.12 8.09 -2.39 -0.02 1.10 16 29 H 0.06 1.20 8.08 -2.39 -0.02 1.18 16 30 H 0.17 1.73 8.06 -2.91 -0.02 1.71 16 31 H 0.17 2.25 8.06 -2.91 -0.02 2.23 16 32 H 0.42 11.67 8.61 -92.71 -0.80 10.87 16 33 H 0.40 14.04 8.83 -92.71 -0.82 13.22 16 34 H 0.31 10.70 8.29 -92.71 -0.77 9.93 16 35 H 0.13 4.91 5.82 -2.91 -0.02 4.89 16 Total: -1.00 -57.14 333.59 6.74 -50.39 By element: Atomic # 1 Polarization: 29.45 SS G_CDS: -0.41 Total: 29.05 kcal Atomic # 6 Polarization: 39.89 SS G_CDS: 6.14 Total: 46.04 kcal Atomic # 7 Polarization: -127.55 SS G_CDS: -1.73 Total: -129.29 kcal Atomic # 8 Polarization: -26.32 SS G_CDS: -0.05 Total: -26.37 kcal Atomic # 9 Polarization: -3.95 SS G_CDS: 0.76 Total: -3.19 kcal Atomic # 14 Polarization: 31.34 SS G_CDS: 2.03 Total: 33.37 kcal Total: -57.14 6.74 -50.39 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185276045.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.177 kcal (2) G-P(sol) polarization free energy of solvation -57.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds