Wall clock time and date at job start Tue Mar 31 2020 11:12:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 119.99558 * 2 1 4 4 H 1.48499 * 109.47203 * 269.99611 * 3 2 1 5 5 H 1.48501 * 109.47112 * 30.00079 * 3 2 1 6 6 H 1.48500 * 109.46853 * 149.99733 * 3 2 1 7 7 C 1.37873 * 120.00103 * 179.97438 * 2 1 3 8 8 C 1.51270 * 120.85017 * 180.02562 * 7 2 1 9 9 C 1.53229 * 108.53778 * 231.33115 * 8 7 2 10 10 C 1.52968 * 109.40191 * 305.37181 * 9 8 7 11 11 H 1.08996 * 109.35000 * 303.52895 * 10 9 8 12 12 N 1.46497 * 109.41333 * 183.70754 * 10 9 8 13 13 C 1.34773 * 120.00430 * 84.64502 * 12 10 9 14 14 O 1.21531 * 119.99763 * 359.97438 * 13 12 10 15 15 C 1.48007 * 120.00306 * 180.02562 * 13 12 10 16 16 C 1.39908 * 120.91398 * 359.97438 * 15 13 12 17 17 C 1.38261 * 119.07118 * 179.97438 * 16 15 13 18 18 F 1.35105 * 119.52850 * 179.97438 * 17 16 15 19 19 N 1.32087 * 120.94530 * 0.02562 * 17 16 15 20 20 C 1.31921 * 122.02168 * 0.02562 * 19 17 16 21 21 F 1.35104 * 119.58806 * 179.97438 * 20 19 17 22 22 C 1.38791 * 120.82527 * 0.24780 * 20 19 17 23 23 F 1.35093 * 120.51611 * 179.74701 * 22 20 19 24 24 C 1.52955 * 109.81940 * 63.59567 * 10 9 8 25 25 C 1.51272 * 120.84975 * 0.02562 * 7 2 1 26 26 H 0.96998 * 120.00652 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.62030 * 351.04032 * 8 7 2 28 28 H 1.08992 * 109.62927 * 111.42041 * 8 7 2 29 29 H 1.08996 * 109.48336 * 185.39163 * 9 8 7 30 30 H 1.08999 * 109.48780 * 65.34417 * 9 8 7 31 31 H 0.97005 * 119.99725 * 264.64554 * 12 10 9 32 32 H 1.08006 * 120.45917 * 0.02562 * 16 15 13 33 33 H 1.09012 * 109.47992 * 56.38225 * 24 10 9 34 34 H 1.08996 * 109.48633 * 176.42170 * 24 10 9 35 35 H 1.08998 * 109.62382 * 8.95415 * 25 7 2 36 36 H 1.09006 * 109.78014 * 248.47530 * 25 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4464 2.6527 0.7001 6 1 3.5465 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 6 3.5170 -1.2164 0.0011 9 6 3.9911 -2.1315 -1.1328 10 6 3.3403 -3.5075 -0.9811 11 1 3.5740 -3.9109 0.0041 12 7 3.8607 -4.4086 -2.0123 13 6 5.0181 -5.0685 -1.8090 14 8 5.6304 -4.9156 -0.7704 15 6 5.5441 -5.9785 -2.8511 16 6 4.8553 -6.1683 -4.0540 17 6 5.3816 -7.0268 -5.0013 18 9 4.7239 -7.2173 -6.1659 19 7 6.5179 -7.6642 -4.7836 20 6 7.1997 -7.5159 -3.6641 21 9 8.3565 -8.1926 -3.4929 22 6 6.7408 -6.6778 -2.6575 23 9 7.4415 -6.5345 -1.5114 24 6 1.8234 -3.3832 -1.1328 25 6 1.2677 -2.5151 0.0005 26 1 -0.4851 0.8400 -0.0004 27 1 3.8981 -0.2078 -0.1589 28 1 3.8772 -1.5965 0.9570 29 1 5.0752 -2.2351 -1.0872 30 1 3.7071 -1.6989 -2.0921 31 1 3.3722 -4.5303 -2.8415 32 1 3.9258 -5.6507 -4.2402 33 1 1.5906 -2.9208 -2.0922 34 1 1.3711 -4.3739 -1.0873 35 1 0.2037 -2.3409 -0.1597 36 1 1.4163 -3.0204 0.9549 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001189174687.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:12 Heat of formation + Delta-G solvation = -148.366289 kcal Electronic energy + Delta-G solvation = -25686.954014 eV Core-core repulsion = 21335.107860 eV Total energy + Delta-G solvation = -4351.846154 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 314.098 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -50.91389 -50.39425 -49.99063 -41.82953 -40.53172 -38.47425 -35.62567 -34.54996 -33.22531 -31.70652 -31.46337 -29.26362 -26.69268 -25.20531 -24.06550 -23.31945 -22.08680 -21.35818 -20.21421 -19.82597 -19.06174 -18.35289 -18.30401 -17.76772 -17.63633 -16.99959 -16.88588 -16.54741 -16.38783 -15.97303 -15.92863 -15.81641 -15.17909 -14.94436 -14.67886 -14.49986 -14.16379 -14.09505 -13.91840 -13.79492 -13.51311 -12.77540 -12.69384 -12.56189 -12.04278 -11.85919 -11.75723 -11.57013 -11.49838 -11.27126 -10.85847 -10.68635 -10.52197 -10.21738 -10.01716 -8.15829 -6.09501 -1.12805 -0.89440 1.29632 1.30718 1.39083 1.44699 1.51753 1.76177 2.02638 2.12210 2.42475 2.71368 2.92069 3.06908 3.14979 3.68570 3.77594 4.02755 4.07002 4.19568 4.31352 4.50053 4.74099 4.81847 4.94839 4.98311 5.06079 5.08967 5.25495 5.25926 5.52978 5.58615 5.63720 5.67310 5.78297 5.85414 6.34310 6.38277 6.96951 6.99023 7.49174 8.94530 Molecular weight = 314.10amu Principal moments of inertia in cm(-1) A = 0.023464 B = 0.003161 C = 0.002975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.045663 B = 8856.738391 C = 9408.351977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.028 3.972 3 Si 0.935 3.065 4 H -0.270 1.270 5 H -0.295 1.295 6 H -0.261 1.261 7 C -0.498 4.498 8 C -0.017 4.017 9 C -0.109 4.109 10 C 0.165 3.835 11 H 0.063 0.937 12 N -0.690 5.690 13 C 0.556 3.444 14 O -0.551 6.551 15 C -0.065 4.065 16 C -0.110 4.110 17 C 0.345 3.655 18 F -0.085 7.085 19 N -0.521 5.521 20 C 0.322 3.678 21 F -0.090 7.090 22 C 0.069 3.931 23 F -0.103 7.103 24 C -0.101 4.101 25 C 0.007 3.993 26 H 0.263 0.737 27 H 0.031 0.969 28 H 0.012 0.988 29 H 0.042 0.958 30 H 0.063 0.937 31 H 0.417 0.583 32 H 0.212 0.788 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.034 0.966 36 H -0.003 1.003 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.166 -13.661 -12.107 20.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.171 4.171 3 Si 0.762 3.238 4 H -0.195 1.195 5 H -0.221 1.221 6 H -0.186 1.186 7 C -0.518 4.518 8 C -0.055 4.055 9 C -0.147 4.147 10 C 0.062 3.938 11 H 0.081 0.919 12 N -0.342 5.342 13 C 0.341 3.659 14 O -0.429 6.429 15 C -0.077 4.077 16 C -0.132 4.132 17 C 0.192 3.808 18 F -0.064 7.064 19 N -0.242 5.242 20 C 0.167 3.833 21 F -0.068 7.068 22 C 0.045 3.955 23 F -0.081 7.081 24 C -0.139 4.139 25 C -0.031 4.031 26 H 0.072 0.928 27 H 0.049 0.951 28 H 0.030 0.970 29 H 0.061 0.939 30 H 0.082 0.918 31 H 0.256 0.744 32 H 0.229 0.771 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.053 0.947 36 H 0.015 0.985 Dipole moment (debyes) X Y Z Total from point charges 9.773 -13.992 -11.982 20.853 hybrid contribution 0.060 1.235 0.512 1.339 sum 9.833 -12.757 -11.469 19.773 Atomic orbital electron populations 1.69939 1.07446 1.27458 1.51849 1.25504 0.95262 1.01435 0.94897 0.85893 0.79053 0.80115 0.78751 1.19518 1.22128 1.18572 1.20588 0.90758 0.92060 1.48359 1.19725 0.95077 0.95921 0.94810 1.21811 0.97640 0.95231 1.00054 1.20788 0.94203 0.88540 0.90304 0.91880 1.45959 1.22378 1.43930 1.21926 1.17854 0.81882 0.80368 0.85794 1.90888 1.58752 1.65078 1.28201 1.20183 0.93668 0.97625 0.96186 1.22269 1.03080 0.98115 0.89691 1.17260 0.86945 0.93028 0.83568 1.91762 1.77008 1.93377 1.44217 1.65969 1.09364 1.26524 1.22296 1.17069 0.84839 0.92622 0.88767 1.91733 1.43288 1.77465 1.94364 1.18375 0.92900 0.99826 0.84433 1.91654 1.76836 1.93859 1.45760 1.21710 0.92126 0.99349 1.00742 1.19300 0.97392 0.93246 0.93166 0.92774 0.95083 0.96979 0.93895 0.91824 0.74379 0.77118 0.91677 0.91589 0.94686 0.98464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -51.80 12.73 21.45 0.27 -51.53 16 2 C 0.03 1.45 5.46 84.65 0.46 1.91 16 3 Si 0.94 41.69 27.27 68.60 1.87 43.56 16 4 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 5 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 6 H -0.26 -11.27 6.46 99.48 0.64 -10.63 16 7 C -0.50 -24.67 5.51 -16.17 -0.09 -24.75 16 8 C -0.02 -0.75 5.59 30.11 0.17 -0.59 16 9 C -0.11 -3.94 5.50 30.66 0.17 -3.78 16 10 C 0.17 5.38 2.35 44.97 0.11 5.49 16 11 H 0.06 2.38 7.58 -2.39 -0.02 2.36 16 12 N -0.69 -15.92 5.03 -445.39 -2.24 -18.16 16 13 C 0.56 14.31 7.75 86.83 0.67 14.99 16 14 O -0.55 -19.53 15.14 -3.81 -0.06 -19.59 16 15 C -0.07 -1.22 5.91 -19.87 -0.12 -1.34 16 16 C -0.11 -1.24 9.58 22.68 0.22 -1.03 16 17 C 0.35 4.90 8.40 84.66 0.71 5.61 16 18 F -0.08 -1.13 17.29 44.97 0.78 -0.35 16 19 N -0.52 -9.85 10.35 -198.01 -2.05 -11.90 16 20 C 0.32 6.42 8.42 84.81 0.71 7.13 16 21 F -0.09 -1.87 17.21 44.97 0.77 -1.09 16 22 C 0.07 1.49 7.34 22.82 0.17 1.66 16 23 F -0.10 -2.78 15.62 44.97 0.70 -2.08 16 24 C -0.10 -3.44 5.40 30.64 0.17 -3.27 16 25 C 0.01 0.32 5.97 30.10 0.18 0.50 16 26 H 0.26 14.07 8.31 -92.71 -0.77 13.30 16 27 H 0.03 1.35 4.78 -2.39 -0.01 1.34 16 28 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 31 H 0.42 5.98 6.74 -92.70 -0.62 5.36 16 32 H 0.21 0.72 6.53 -2.91 -0.02 0.70 16 33 H 0.06 2.14 8.14 -2.38 -0.02 2.12 16 34 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.03 1.78 7.07 -2.39 -0.02 1.76 16 36 H 0.00 -0.14 8.14 -2.38 -0.02 -0.16 16 Total: -1.00 -63.87 314.35 4.05 -59.82 By element: Atomic # 1 Polarization: -1.68 SS G_CDS: 0.48 Total: -1.20 kcal Atomic # 6 Polarization: -1.00 SS G_CDS: 3.53 Total: 2.53 kcal Atomic # 7 Polarization: -77.57 SS G_CDS: -4.02 Total: -81.59 kcal Atomic # 8 Polarization: -19.53 SS G_CDS: -0.06 Total: -19.59 kcal Atomic # 9 Polarization: -5.78 SS G_CDS: 2.25 Total: -3.52 kcal Atomic # 14 Polarization: 41.69 SS G_CDS: 1.87 Total: 43.56 kcal Total: -63.87 4.05 -59.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189174687.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.547 kcal (2) G-P(sol) polarization free energy of solvation -63.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds