Wall clock time and date at job start Tue Mar 31 2020 10:49:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31584 * 1 3 3 Si 1.86796 * 120.00053 * 2 1 4 4 H 1.48503 * 109.46864 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47189 * 299.99910 * 3 2 1 6 6 H 1.48500 * 109.47425 * 60.00096 * 3 2 1 7 7 C 1.38626 * 119.99523 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99973 * 179.97438 * 7 2 1 9 9 O 1.34815 * 120.00183 * 0.02562 * 7 2 1 10 10 C 1.35681 * 117.00083 * 185.05733 * 9 7 2 11 11 C 1.39040 * 119.93224 * 354.44349 * 10 9 7 12 12 C 1.37793 * 120.06057 * 180.02562 * 11 10 9 13 13 C 1.39567 * 119.93865 * 359.97438 * 12 11 10 14 14 C 1.48081 * 120.06324 * 180.02562 * 13 12 11 15 15 C 1.38519 * 120.52406 * 310.01543 * 14 13 12 16 16 C 1.40041 * 119.30746 * 179.97438 * 15 14 13 17 17 F 1.35103 * 119.85419 * 180.02562 * 16 15 14 18 18 C 1.35537 * 120.29187 * 0.02562 * 16 15 14 19 19 N 1.35986 * 120.98222 * 359.95326 * 18 16 15 20 20 N 1.40266 * 132.90800 * 180.02562 * 19 18 16 21 21 C 1.31775 * 107.05784 * 180.02562 * 20 19 18 22 22 N 1.39329 * 125.30308 * 179.97438 * 21 20 19 23 23 N 1.33020 * 109.39792 * 359.77772 * 21 20 19 24 24 C 1.32765 * 109.63019 * 0.37446 * 23 21 20 25 25 C 1.39563 * 119.87151 * 0.27493 * 13 12 11 26 26 C 1.37793 * 119.93358 * 359.47097 * 25 13 12 27 27 H 0.97002 * 119.99395 * 359.97438 * 1 2 3 28 28 H 1.07998 * 119.96982 * 359.97438 * 11 10 9 29 29 H 1.08000 * 120.03236 * 180.02562 * 12 11 10 30 30 H 1.08002 * 120.34914 * 0.02562 * 15 14 13 31 31 H 1.08009 * 119.50971 * 179.97438 * 18 16 15 32 32 H 0.97003 * 120.00089 * 359.97438 * 22 21 20 33 33 H 0.96999 * 120.00505 * 179.97438 * 22 21 20 34 34 H 1.07998 * 120.03053 * 179.72359 * 25 13 12 35 35 H 1.08000 * 119.96986 * 180.25258 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 3.7098 1.3463 -0.0006 5 1 1.8911 2.3964 -1.2125 6 1 1.8912 2.3964 1.2125 7 6 2.0089 -1.2006 0.0005 8 1 3.0888 -1.2007 0.0001 9 8 1.3347 -2.3681 0.0005 10 6 2.0695 -3.5037 0.1076 11 6 3.4582 -3.4353 0.0944 12 6 4.2070 -4.5870 0.2025 13 6 3.5702 -5.8228 0.3258 14 6 4.3723 -7.0621 0.4427 15 6 5.3940 -7.3262 -0.4546 16 6 6.1366 -8.5058 -0.3200 17 9 7.1359 -8.7742 -1.1887 18 6 5.8574 -9.3794 0.6779 19 7 4.8573 -9.1318 1.5656 20 7 4.3621 -9.8425 2.6688 21 6 3.3739 -9.1322 3.1742 22 7 2.6114 -9.4890 4.2844 23 7 3.2204 -8.0193 2.4619 24 6 4.1070 -7.9962 1.4740 25 6 2.1762 -5.8888 0.3336 26 6 1.4326 -4.7333 0.2304 27 1 -0.4849 0.8401 0.0004 28 1 3.9503 -2.4788 -0.0014 29 1 5.2856 -4.5333 0.1926 30 1 5.6161 -6.6293 -1.2492 31 1 6.4379 -10.2855 0.7697 32 1 2.7921 -10.3207 4.7499 33 1 1.8998 -8.9060 4.5919 34 1 1.6808 -6.8441 0.4244 35 1 0.3538 -4.7834 0.2404 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243592606.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:49:19 Heat of formation + Delta-G solvation = 85.957451 kcal Electronic energy + Delta-G solvation = -24250.601711 eV Core-core repulsion = 20359.605783 eV Total energy + Delta-G solvation = -3890.995928 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 314.092 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.24260 -42.62942 -39.16748 -37.98492 -36.60445 -34.24310 -33.55262 -32.34428 -30.54739 -30.15117 -29.75306 -27.95273 -25.52561 -24.15860 -23.31163 -21.90683 -21.80047 -20.68190 -18.67617 -18.16641 -17.99534 -17.33467 -16.79879 -16.55275 -16.18487 -15.80119 -15.54536 -15.13449 -14.92251 -14.61631 -14.46983 -13.77886 -13.63671 -13.51323 -12.85134 -12.75277 -12.68279 -12.56626 -11.92003 -11.76399 -11.54750 -11.16741 -10.92537 -10.77591 -10.69937 -10.49087 -10.36081 -10.04134 -9.44762 -8.97589 -8.69545 -8.28743 -8.17953 -7.15912 -6.56685 -4.13421 0.35246 0.78227 1.78006 2.13437 2.18888 2.70884 3.06667 3.08633 3.14325 3.15785 3.31150 3.76045 3.88119 3.96075 4.31502 4.47939 4.55123 4.92693 5.00025 5.13831 5.20021 5.48120 5.56267 5.65189 5.76821 5.86033 6.02654 6.12768 6.18792 6.30960 6.52612 6.61772 6.80184 6.94541 7.12476 7.13771 7.19355 7.22406 7.32842 7.68679 7.88489 8.17438 8.88518 9.56473 10.60485 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.017949 B = 0.003154 C = 0.002805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.584070 B = 8876.638693 C = 9979.136105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.856 5.856 2 C 0.040 3.960 3 Si 0.943 3.057 4 H -0.265 1.265 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.392 4.392 8 H 0.096 0.904 9 O -0.168 6.168 10 C 0.166 3.834 11 C -0.238 4.238 12 C -0.042 4.042 13 C -0.164 4.164 14 C 0.043 3.957 15 C -0.113 4.113 16 C 0.076 3.924 17 F -0.119 7.119 18 C 0.059 3.941 19 N -0.266 5.266 20 N -0.386 5.386 21 C 0.501 3.499 22 N -0.818 5.818 23 N -0.553 5.553 24 C 0.305 3.695 25 C -0.026 4.026 26 C -0.194 4.194 27 H 0.272 0.728 28 H 0.131 0.869 29 H 0.111 0.889 30 H 0.162 0.838 31 H 0.176 0.824 32 H 0.414 0.586 33 H 0.418 0.582 34 H 0.114 0.886 35 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.806 -15.848 2.134 18.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C -0.165 4.165 3 Si 0.768 3.232 4 H -0.189 1.189 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.467 4.467 8 H 0.113 0.887 9 O -0.070 6.070 10 C 0.111 3.889 11 C -0.257 4.257 12 C -0.060 4.060 13 C -0.166 4.166 14 C 0.038 3.962 15 C -0.139 4.139 16 C 0.052 3.948 17 F -0.098 7.098 18 C -0.072 4.072 19 N -0.039 5.039 20 N -0.229 5.229 21 C 0.131 3.869 22 N -0.373 5.373 23 N -0.289 5.289 24 C 0.050 3.950 25 C -0.044 4.044 26 C -0.213 4.213 27 H 0.082 0.918 28 H 0.149 0.851 29 H 0.129 0.871 30 H 0.180 0.820 31 H 0.193 0.807 32 H 0.244 0.756 33 H 0.250 0.750 34 H 0.132 0.868 35 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 9.271 -16.053 2.566 18.715 hybrid contribution 0.621 0.618 0.086 0.880 sum 9.893 -15.436 2.652 18.524 Atomic orbital electron populations 1.70061 1.06041 1.27889 1.44955 1.25350 0.95885 0.99030 0.96254 0.85611 0.79193 0.80077 0.78368 1.18943 1.20029 1.20020 1.21454 0.92015 0.80659 1.52613 0.88653 1.83954 1.34739 1.11668 1.76615 1.19520 0.90289 0.87934 0.91204 1.21050 0.93664 0.98840 1.12153 1.20731 0.98321 0.90966 0.95993 1.17663 0.92466 0.89683 1.16767 1.17878 0.95089 0.93054 0.90147 1.21613 0.95397 0.96421 1.00452 1.16360 0.91235 0.95822 0.91428 1.91565 1.57575 1.93866 1.66769 1.20814 0.93313 1.02281 0.90768 1.46899 1.22254 1.15257 1.19517 1.78707 1.20954 1.18933 1.04310 1.20444 0.89037 0.87966 0.89412 1.40970 1.38956 1.27754 1.29629 1.70680 1.27301 1.21843 1.09083 1.21592 0.89789 0.88164 0.95422 1.20576 0.91937 0.97010 0.94895 1.20119 0.99744 0.89945 1.11534 0.91834 0.85098 0.87053 0.82042 0.80692 0.75552 0.74988 0.86807 0.86132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.27 13.67 55.48 0.76 -23.51 16 2 C 0.04 1.06 5.49 -17.51 -0.10 0.97 16 3 Si 0.94 19.73 29.55 -169.99 -5.02 14.70 16 4 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 5 H -0.27 -5.64 7.11 56.52 0.40 -5.23 16 6 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 7 C -0.39 -10.48 9.48 30.88 0.29 -10.19 16 8 H 0.10 2.34 5.19 -52.49 -0.27 2.07 16 9 O -0.17 -4.60 9.75 0.31 0.00 -4.60 16 10 C 0.17 3.83 6.65 -38.99 -0.26 3.58 16 11 C -0.24 -4.86 9.15 -39.45 -0.36 -5.22 16 12 C -0.04 -0.72 9.52 -39.25 -0.37 -1.09 16 13 C -0.16 -2.78 5.50 -104.87 -0.58 -3.36 16 14 C 0.04 0.62 5.50 -104.46 -0.57 0.05 16 15 C -0.11 -1.32 9.58 -38.80 -0.37 -1.69 16 16 C 0.08 0.80 7.24 -39.87 -0.29 0.51 16 17 F -0.12 -1.18 17.26 2.25 0.04 -1.14 16 18 C 0.06 0.65 11.14 -16.68 -0.19 0.46 16 19 N -0.27 -3.75 3.89 -12.06 -0.05 -3.80 16 20 N -0.39 -5.65 12.81 29.91 0.38 -5.27 16 21 C 0.50 7.22 9.38 -321.69 -3.02 4.20 16 22 N -0.82 -8.03 9.12 29.92 0.27 -7.76 16 23 N -0.55 -9.15 11.09 -12.99 -0.14 -9.29 16 24 C 0.30 4.78 7.43 -156.21 -1.16 3.62 16 25 C -0.03 -0.47 9.38 -39.25 -0.37 -0.83 16 26 C -0.19 -3.99 9.98 -39.45 -0.39 -4.39 16 27 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 28 H 0.13 2.65 5.62 -52.49 -0.30 2.36 16 29 H 0.11 1.58 8.04 -52.49 -0.42 1.16 16 30 H 0.16 1.59 8.05 -52.49 -0.42 1.17 16 31 H 0.18 1.40 8.06 -52.48 -0.42 0.98 16 32 H 0.41 2.95 8.96 -40.82 -0.37 2.59 16 33 H 0.42 3.51 8.96 -40.82 -0.37 3.15 16 34 H 0.11 1.92 8.06 -52.49 -0.42 1.49 16 35 H 0.12 2.40 8.06 -52.49 -0.42 1.97 16 LS Contribution 321.19 15.07 4.84 4.84 Total: -1.00 -31.75 321.19 -9.20 -40.95 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: -2.55 Total: 8.25 kcal Atomic # 6 Polarization: -5.64 SS G_CDS: -7.74 Total: -13.38 kcal Atomic # 7 Polarization: -50.85 SS G_CDS: 1.22 Total: -49.63 kcal Atomic # 8 Polarization: -4.60 SS G_CDS: 0.00 Total: -4.60 kcal Atomic # 9 Polarization: -1.18 SS G_CDS: 0.04 Total: -1.14 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -5.02 Total: 14.70 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -31.75 -9.20 -40.95 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243592606.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.911 kcal (2) G-P(sol) polarization free energy of solvation -31.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.954 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds