Wall clock time and date at job start Tue Mar 31 2020 10:49:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31584 * 1 3 3 Si 1.86796 * 120.00053 * 2 1 4 4 H 1.48503 * 109.46864 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47189 * 299.99910 * 3 2 1 6 6 H 1.48500 * 109.47425 * 60.00096 * 3 2 1 7 7 C 1.38626 * 119.99523 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99973 * 179.97438 * 7 2 1 9 9 O 1.34815 * 120.00183 * 0.02562 * 7 2 1 10 10 C 1.35681 * 117.00083 * 185.05733 * 9 7 2 11 11 C 1.39040 * 119.93224 * 354.44349 * 10 9 7 12 12 C 1.37793 * 120.06057 * 180.02562 * 11 10 9 13 13 C 1.39567 * 119.93865 * 359.97438 * 12 11 10 14 14 C 1.48081 * 120.06324 * 180.02562 * 13 12 11 15 15 C 1.38519 * 120.52406 * 310.01543 * 14 13 12 16 16 C 1.40041 * 119.30746 * 179.97438 * 15 14 13 17 17 F 1.35103 * 119.85419 * 180.02562 * 16 15 14 18 18 C 1.35537 * 120.29187 * 0.02562 * 16 15 14 19 19 N 1.35986 * 120.98222 * 359.95326 * 18 16 15 20 20 N 1.40266 * 132.90800 * 180.02562 * 19 18 16 21 21 C 1.31775 * 107.05784 * 180.02562 * 20 19 18 22 22 N 1.39329 * 125.30308 * 179.97438 * 21 20 19 23 23 N 1.33020 * 109.39792 * 359.77772 * 21 20 19 24 24 C 1.32765 * 109.63019 * 0.37446 * 23 21 20 25 25 C 1.39563 * 119.87151 * 0.27493 * 13 12 11 26 26 C 1.37793 * 119.93358 * 359.47097 * 25 13 12 27 27 H 0.97002 * 119.99395 * 359.97438 * 1 2 3 28 28 H 1.07998 * 119.96982 * 359.97438 * 11 10 9 29 29 H 1.08000 * 120.03236 * 180.02562 * 12 11 10 30 30 H 1.08002 * 120.34914 * 0.02562 * 15 14 13 31 31 H 1.08009 * 119.50971 * 179.97438 * 18 16 15 32 32 H 0.97003 * 120.00089 * 359.97438 * 22 21 20 33 33 H 0.96999 * 120.00505 * 179.97438 * 22 21 20 34 34 H 1.07998 * 120.03053 * 179.72359 * 25 13 12 35 35 H 1.08000 * 119.96986 * 180.25258 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 3.7098 1.3463 -0.0006 5 1 1.8911 2.3964 -1.2125 6 1 1.8912 2.3964 1.2125 7 6 2.0089 -1.2006 0.0005 8 1 3.0888 -1.2007 0.0001 9 8 1.3347 -2.3681 0.0005 10 6 2.0695 -3.5037 0.1076 11 6 3.4582 -3.4353 0.0944 12 6 4.2070 -4.5870 0.2025 13 6 3.5702 -5.8228 0.3258 14 6 4.3723 -7.0621 0.4427 15 6 5.3940 -7.3262 -0.4546 16 6 6.1366 -8.5058 -0.3200 17 9 7.1359 -8.7742 -1.1887 18 6 5.8574 -9.3794 0.6779 19 7 4.8573 -9.1318 1.5656 20 7 4.3621 -9.8425 2.6688 21 6 3.3739 -9.1322 3.1742 22 7 2.6114 -9.4890 4.2844 23 7 3.2204 -8.0193 2.4619 24 6 4.1070 -7.9962 1.4740 25 6 2.1762 -5.8888 0.3336 26 6 1.4326 -4.7333 0.2304 27 1 -0.4849 0.8401 0.0004 28 1 3.9503 -2.4788 -0.0014 29 1 5.2856 -4.5333 0.1926 30 1 5.6161 -6.6293 -1.2492 31 1 6.4379 -10.2855 0.7697 32 1 2.7921 -10.3207 4.7499 33 1 1.8998 -8.9060 4.5919 34 1 1.6808 -6.8441 0.4244 35 1 0.3538 -4.7834 0.2404 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243592606.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:49:18 Heat of formation + Delta-G solvation = 67.981667 kcal Electronic energy + Delta-G solvation = -24251.381200 eV Core-core repulsion = 20359.605783 eV Total energy + Delta-G solvation = -3891.775416 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 314.092 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.07178 -43.68663 -40.79255 -39.17297 -38.08462 -35.27553 -34.70134 -34.14393 -31.96352 -31.47709 -30.81482 -29.28045 -27.36320 -25.28384 -24.46547 -23.42084 -22.99378 -21.99983 -19.96401 -19.60439 -19.06032 -18.88887 -17.93406 -17.57480 -17.16350 -16.68873 -16.49004 -16.44000 -16.30719 -16.11199 -15.79924 -15.52625 -15.16638 -14.67581 -14.38934 -14.20458 -13.70871 -13.64231 -13.54571 -13.12338 -13.07038 -12.66966 -12.36105 -12.19588 -12.08767 -12.04964 -11.29504 -11.17394 -11.14536 -10.80328 -9.81948 -9.74581 -9.32008 -8.66730 -8.46679 -6.14007 -0.66991 -0.23967 0.61390 0.62824 0.84091 1.38547 1.46147 1.56733 1.67603 2.18613 2.19375 2.23900 2.72409 2.84436 2.98687 3.16794 3.32928 3.49541 3.64760 3.95361 4.05660 4.14608 4.18644 4.45543 4.55651 4.62528 4.77955 4.89619 4.99384 5.04458 5.15300 5.19107 5.27501 5.55291 5.56977 5.68014 5.70187 6.02942 6.12620 6.23244 6.33199 6.98027 7.23819 7.76888 8.76269 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.017949 B = 0.003154 C = 0.002805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.584070 B = 8876.638693 C = 9979.136105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.022 4.022 3 Si 1.019 2.981 4 H -0.247 1.247 5 H -0.269 1.269 6 H -0.271 1.271 7 C -0.412 4.412 8 H 0.108 0.892 9 O -0.226 6.226 10 C 0.129 3.871 11 C -0.240 4.240 12 C -0.037 4.037 13 C -0.131 4.131 14 C 0.003 3.997 15 C -0.072 4.072 16 C 0.081 3.919 17 F -0.108 7.108 18 C 0.078 3.922 19 N -0.271 5.271 20 N -0.399 5.399 21 C 0.493 3.507 22 N -0.801 5.801 23 N -0.592 5.592 24 C 0.293 3.707 25 C -0.026 4.026 26 C -0.204 4.204 27 H 0.273 0.727 28 H 0.130 0.870 29 H 0.153 0.847 30 H 0.187 0.813 31 H 0.209 0.791 32 H 0.427 0.573 33 H 0.425 0.575 34 H 0.127 0.873 35 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.607 -18.203 1.909 22.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.220 4.220 3 Si 0.838 3.162 4 H -0.170 1.170 5 H -0.194 1.194 6 H -0.196 1.196 7 C -0.488 4.488 8 H 0.126 0.874 9 O -0.132 6.132 10 C 0.078 3.922 11 C -0.259 4.259 12 C -0.055 4.055 13 C -0.132 4.132 14 C -0.001 4.001 15 C -0.098 4.098 16 C 0.057 3.943 17 F -0.087 7.087 18 C -0.053 4.053 19 N -0.044 5.044 20 N -0.243 5.243 21 C 0.124 3.876 22 N -0.358 5.358 23 N -0.329 5.329 24 C 0.040 3.960 25 C -0.044 4.044 26 C -0.223 4.223 27 H 0.082 0.918 28 H 0.147 0.853 29 H 0.171 0.829 30 H 0.204 0.796 31 H 0.226 0.774 32 H 0.260 0.740 33 H 0.258 0.742 34 H 0.145 0.855 35 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 13.103 -18.492 2.366 22.787 hybrid contribution -0.283 0.740 0.165 0.809 sum 12.820 -17.752 2.531 22.043 Atomic orbital electron populations 1.70208 1.08107 1.28810 1.48551 1.26612 0.96819 1.02826 0.95750 0.84520 0.78477 0.74762 0.78420 1.17047 1.19425 1.19639 1.21938 0.92776 0.81184 1.52920 0.87450 1.83933 1.36225 1.12711 1.80300 1.19999 0.91732 0.87652 0.92840 1.21182 0.92705 1.00140 1.11875 1.21092 1.00158 0.89665 0.94590 1.17927 0.92126 0.90955 1.12206 1.17607 0.97288 0.92840 0.92370 1.21896 0.92484 0.96470 0.98913 1.16165 0.91345 0.95294 0.91510 1.91615 1.57021 1.93708 1.66342 1.21463 0.91649 1.03012 0.89205 1.47044 1.22641 1.14863 1.19830 1.78656 1.21486 1.19293 1.04880 1.20822 0.89275 0.87529 0.90014 1.41037 1.38217 1.28280 1.28287 1.70643 1.28712 1.23240 1.10333 1.21650 0.90047 0.88811 0.95528 1.20739 0.92840 0.96451 0.94412 1.20268 0.99903 0.90278 1.11850 0.91817 0.85282 0.82944 0.79598 0.77441 0.74024 0.74223 0.85540 0.86819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.55 13.67 21.61 0.30 -55.25 16 2 C -0.02 -1.24 5.49 84.82 0.47 -0.77 16 3 Si 1.02 41.66 29.55 68.60 2.03 43.69 16 4 H -0.25 -9.20 7.11 99.48 0.71 -8.49 16 5 H -0.27 -10.59 7.11 99.48 0.71 -9.88 16 6 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 7 C -0.41 -23.25 9.48 67.91 0.64 -22.61 16 8 H 0.11 5.46 5.19 -2.91 -0.02 5.45 16 9 O -0.23 -13.28 9.75 -21.82 -0.21 -13.49 16 10 C 0.13 6.25 6.65 22.65 0.15 6.40 16 11 C -0.24 -9.81 9.15 22.36 0.20 -9.61 16 12 C -0.04 -1.19 9.52 22.49 0.21 -0.97 16 13 C -0.13 -4.15 5.50 -20.02 -0.11 -4.26 16 14 C 0.00 0.09 5.50 -19.76 -0.11 -0.02 16 15 C -0.07 -1.32 9.58 22.77 0.22 -1.10 16 16 C 0.08 1.29 7.24 22.08 0.16 1.45 16 17 F -0.11 -1.55 17.26 44.97 0.78 -0.77 16 18 C 0.08 1.33 11.14 83.42 0.93 2.26 16 19 N -0.27 -6.75 3.89 -192.06 -0.75 -7.50 16 20 N -0.40 -10.71 12.81 -59.27 -0.76 -11.47 16 21 C 0.49 13.39 9.38 261.10 2.45 15.84 16 22 N -0.80 -14.49 9.12 -59.24 -0.54 -15.03 16 23 N -0.59 -18.74 11.09 -195.01 -2.16 -20.90 16 24 C 0.29 8.45 7.43 134.44 1.00 9.45 16 25 C -0.03 -0.94 9.38 22.48 0.21 -0.73 16 26 C -0.20 -8.74 9.98 22.35 0.22 -8.52 16 27 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 28 H 0.13 5.26 5.62 -2.91 -0.02 5.24 16 29 H 0.15 3.63 8.04 -2.91 -0.02 3.60 16 30 H 0.19 2.55 8.05 -2.91 -0.02 2.53 16 31 H 0.21 2.17 8.06 -2.91 -0.02 2.14 16 32 H 0.43 5.30 8.96 -92.71 -0.83 4.47 16 33 H 0.42 6.62 8.96 -92.71 -0.83 5.79 16 34 H 0.13 4.19 8.06 -2.91 -0.02 4.17 16 35 H 0.11 4.88 8.06 -2.91 -0.02 4.85 16 Total: -1.00 -74.65 321.19 4.87 -69.78 By element: Atomic # 1 Polarization: 24.58 SS G_CDS: -0.46 Total: 24.12 kcal Atomic # 6 Polarization: -19.83 SS G_CDS: 6.65 Total: -13.18 kcal Atomic # 7 Polarization: -106.23 SS G_CDS: -3.91 Total: -110.14 kcal Atomic # 8 Polarization: -13.28 SS G_CDS: -0.21 Total: -13.49 kcal Atomic # 9 Polarization: -1.55 SS G_CDS: 0.78 Total: -0.77 kcal Atomic # 14 Polarization: 41.66 SS G_CDS: 2.03 Total: 43.69 kcal Total: -74.65 4.87 -69.78 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243592606.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.759 kcal (2) G-P(sol) polarization free energy of solvation -74.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.777 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds