Wall clock time and date at job start Tue Mar 31 2020 11:14:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38535 * 119.87571 * 2 1 4 4 C 1.38050 * 120.79087 * 180.02562 * 3 2 1 5 5 F 1.35101 * 119.93075 * 179.97438 * 4 3 2 6 6 C 1.39358 * 120.14295 * 359.94984 * 4 3 2 7 7 N 1.37824 * 133.35398 * 180.02562 * 6 4 3 8 8 H 0.96998 * 125.08011 * 0.03143 * 7 6 4 9 9 C 1.36745 * 109.83236 * 179.76917 * 7 6 4 10 10 C 1.34371 * 109.86656 * 0.44931 * 9 7 6 11 11 C 1.40444 * 119.49792 * 0.07198 * 6 4 3 12 12 C 1.38866 * 119.87278 * 180.02562 * 2 1 3 13 13 C 1.48143 * 120.28046 * 359.97438 * 12 2 1 14 14 C 1.39115 * 120.42850 * 269.74917 * 13 12 2 15 15 C 1.40930 * 118.11679 * 179.72139 * 14 13 12 16 16 C 1.41386 * 120.56457 * 180.27323 * 15 14 13 17 17 H 1.07999 * 119.99984 * 155.98154 * 16 15 14 18 18 C 1.39881 * 119.99995 * 335.98365 * 16 15 14 19 19 N 1.30872 * 119.99864 * 342.86519 * 18 16 15 20 20 Si 1.86797 * 119.99885 * 162.87501 * 18 16 15 21 21 H 1.48495 * 109.47433 * 90.00075 * 20 18 16 22 22 H 1.48508 * 109.47003 * 209.99826 * 20 18 16 23 23 H 1.48503 * 109.47257 * 329.99258 * 20 18 16 24 24 C 1.40817 * 118.86864 * 0.58729 * 15 14 13 25 25 N 1.31516 * 120.72043 * 359.66652 * 24 15 14 26 26 C 1.32145 * 122.08844 * 0.02562 * 25 24 15 27 27 F 1.35096 * 119.46664 * 180.02562 * 26 25 24 28 28 H 1.08994 * 109.47589 * 269.97847 * 1 2 3 29 29 H 1.09000 * 109.47115 * 29.98410 * 1 2 3 30 30 H 1.09005 * 109.47359 * 149.97517 * 1 2 3 31 31 H 1.08005 * 119.60015 * 359.97438 * 3 2 1 32 32 H 1.07995 * 125.06698 * 180.29675 * 9 7 6 33 33 H 1.08001 * 126.49340 * 179.83247 * 10 9 7 34 34 H 1.07992 * 120.94219 * 359.97438 * 14 13 12 35 35 H 0.96995 * 119.99716 * 179.97438 * 19 18 16 36 36 H 1.07995 * 119.64545 * 179.69376 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.2012 0.0000 4 6 3.5774 1.2233 -0.0005 5 9 4.2327 2.4047 -0.0010 6 6 4.2963 0.0295 0.0000 7 7 5.6429 -0.2640 0.0001 8 1 6.3567 0.3928 0.0003 9 6 5.8223 -1.6196 0.0059 10 6 4.6294 -2.2381 -0.0003 11 6 3.6059 -1.1935 -0.0005 12 6 2.1986 -1.2042 -0.0005 13 6 1.4613 -2.4891 -0.0005 14 6 1.1157 -3.1031 1.1990 15 6 0.4094 -4.3213 1.1422 16 6 0.0271 -4.9868 2.3296 17 1 -0.8090 -5.6702 2.3204 18 6 0.7320 -4.7600 3.5164 19 7 1.9214 -4.2154 3.4772 20 14 -0.0244 -5.2346 5.1571 21 1 0.3539 -6.6311 5.4911 22 1 0.4747 -4.3200 6.2153 23 1 -1.5031 -5.1296 5.0694 24 6 0.0968 -4.8678 -0.1174 25 7 0.4506 -4.2512 -1.2239 26 6 1.1079 -3.1049 -1.2093 27 9 1.4446 -2.5170 -2.3781 28 1 -0.3634 -0.0004 1.0276 29 1 -0.3633 0.8901 -0.5136 30 1 -0.3634 -0.8898 -0.5142 31 1 1.6485 2.1316 -0.0004 32 1 6.7799 -2.1188 0.0118 33 1 4.4588 -3.3046 -0.0005 34 1 1.3776 -2.6568 2.1469 35 1 2.4099 -4.0578 4.3002 36 1 -0.4397 -5.8033 -0.1756 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243885357.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:01 Heat of formation + Delta-G solvation = -13.549945 kcal Electronic energy + Delta-G solvation = -25502.939747 eV Core-core repulsion = 21587.708893 eV Total energy + Delta-G solvation = -3915.230854 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 314.093 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -48.65244 -47.49401 -40.89335 -38.42696 -36.94491 -34.16880 -32.43118 -31.02000 -30.47603 -29.87895 -27.84121 -26.03898 -25.49961 -22.95998 -21.89067 -21.44490 -20.64442 -20.09340 -18.23755 -17.41094 -16.59848 -16.31523 -15.93494 -15.88733 -15.51718 -15.12066 -14.79196 -14.58589 -13.98658 -13.80994 -13.42702 -13.24083 -12.98233 -12.84091 -12.43810 -12.38198 -12.27059 -12.06136 -11.74944 -11.65196 -11.39500 -11.33866 -11.22035 -11.05123 -10.78029 -10.60013 -10.11841 -9.47148 -9.22830 -8.44485 -8.28875 -7.97705 -7.62613 -7.23553 -6.98938 -4.61031 1.21776 1.75924 2.29993 2.68199 2.93114 2.96063 2.97690 3.04585 3.22969 3.75213 3.99094 4.36338 4.47665 4.91749 5.03779 5.08990 5.18702 5.33822 5.45040 5.59374 5.66867 5.90140 5.95466 6.07199 6.10608 6.20529 6.40144 6.41695 6.52846 6.53803 6.76988 6.85030 6.87562 6.94016 7.03688 7.06341 7.33577 7.49130 7.64874 7.66176 7.78435 8.22918 8.49507 8.50030 9.24449 9.90920 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.013236 B = 0.005072 C = 0.004604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2114.923259 B = 5518.879153 C = 6080.293235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.083 4.083 3 C -0.126 4.126 4 C 0.071 3.929 5 F -0.151 7.151 6 C 0.060 3.940 7 N -0.594 5.594 8 H 0.414 0.586 9 C 0.042 3.958 10 C -0.176 4.176 11 C -0.062 4.062 12 C 0.029 3.971 13 C -0.093 4.093 14 C -0.093 4.093 15 C 0.056 3.944 16 C -0.441 4.441 17 H 0.087 0.913 18 C 0.074 3.926 19 N -0.781 5.781 20 Si 0.912 3.088 21 H -0.267 1.267 22 H -0.274 1.274 23 H -0.258 1.258 24 C 0.008 3.992 25 N -0.489 5.489 26 C 0.166 3.834 27 F -0.146 7.146 28 H 0.070 0.930 29 H 0.061 0.939 30 H 0.072 0.928 31 H 0.135 0.865 32 H 0.171 0.829 33 H 0.150 0.850 34 H 0.137 0.863 35 H 0.286 0.714 36 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.707 7.162 -0.444 8.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.084 4.084 3 C -0.146 4.146 4 C 0.049 3.951 5 F -0.130 7.130 6 C -0.048 4.048 7 N -0.198 5.198 8 H 0.250 0.750 9 C -0.083 4.083 10 C -0.201 4.201 11 C -0.067 4.067 12 C 0.028 3.972 13 C -0.097 4.097 14 C -0.118 4.118 15 C 0.052 3.948 16 C -0.470 4.470 17 H 0.105 0.895 18 C -0.146 4.146 19 N -0.405 5.405 20 Si 0.736 3.264 21 H -0.192 1.192 22 H -0.199 1.199 23 H -0.182 1.182 24 C -0.153 4.153 25 N -0.201 5.201 26 C 0.012 3.988 27 F -0.125 7.125 28 H 0.089 0.911 29 H 0.080 0.920 30 H 0.090 0.910 31 H 0.153 0.847 32 H 0.188 0.812 33 H 0.168 0.832 34 H 0.155 0.845 35 H 0.097 0.903 36 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 4.872 6.996 -1.140 8.601 hybrid contribution 0.708 0.722 1.399 1.727 sum 5.580 7.717 0.259 9.527 Atomic orbital electron populations 1.20678 0.90406 1.02661 1.02381 1.19482 0.96253 0.90658 1.02037 1.20505 0.90706 0.98931 1.04423 1.16554 0.89755 0.77588 1.11180 1.91417 1.81432 1.45329 1.94826 1.18021 0.84415 0.94044 1.08290 1.41589 1.04980 1.07079 1.66143 0.74984 1.21801 0.99693 0.81848 1.04986 1.21749 0.89982 0.98918 1.09447 1.18962 0.92278 0.91392 1.04051 1.18084 0.90081 0.92364 0.96671 1.18935 1.02559 0.94788 0.93398 1.21666 1.00299 0.94298 0.95578 1.18458 0.91298 0.91409 0.93657 1.19534 1.13178 1.22236 0.92037 0.89477 1.25992 0.93800 0.93129 1.01711 1.69785 1.09041 1.30732 1.30916 0.86226 0.80819 0.79293 0.80070 1.19219 1.19927 1.18158 1.22280 1.06921 0.99763 0.86373 1.66279 1.11447 1.07874 1.34500 1.17525 1.07721 0.93962 0.79589 1.91408 1.91137 1.82580 1.47413 0.91134 0.92027 0.90953 0.84725 0.81168 0.83229 0.84504 0.90264 0.84547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.70 9.61 36.00 0.35 -1.35 16 2 C -0.08 -1.50 5.91 -104.28 -0.62 -2.11 16 3 C -0.13 -2.02 9.62 -39.54 -0.38 -2.40 16 4 C 0.07 1.17 7.31 -39.23 -0.29 0.89 16 5 F -0.15 -2.32 17.27 2.25 0.04 -2.28 16 6 C 0.06 1.02 7.25 -83.92 -0.61 0.42 16 7 N -0.59 -8.20 6.07 -10.61 -0.06 -8.26 16 8 H 0.41 4.30 8.96 -40.82 -0.37 3.93 16 9 C 0.04 0.58 11.82 -16.73 -0.20 0.38 16 10 C -0.18 -3.13 10.95 -37.73 -0.41 -3.55 16 11 C -0.06 -1.21 6.18 -104.91 -0.65 -1.85 16 12 C 0.03 0.61 4.98 -104.65 -0.52 0.09 16 13 C -0.09 -2.12 3.77 -104.77 -0.40 -2.51 16 14 C -0.09 -2.22 8.55 -38.24 -0.33 -2.55 16 15 C 0.06 1.37 5.59 -106.71 -0.60 0.78 16 16 C -0.44 -10.40 9.08 -37.77 -0.34 -10.74 16 17 H 0.09 1.93 7.90 -52.49 -0.41 1.52 16 18 C 0.07 1.66 5.18 -17.35 -0.09 1.57 16 19 N -0.78 -18.27 10.92 55.54 0.61 -17.67 16 20 Si 0.91 16.91 29.59 -169.99 -5.03 11.88 16 21 H -0.27 -4.91 7.11 56.52 0.40 -4.51 16 22 H -0.27 -5.04 7.11 56.52 0.40 -4.64 16 23 H -0.26 -4.74 7.11 56.52 0.40 -4.34 16 24 C 0.01 0.19 10.96 -16.71 -0.18 0.00 16 25 N -0.49 -12.00 10.33 -12.55 -0.13 -12.13 16 26 C 0.17 3.99 8.11 -16.69 -0.14 3.85 16 27 F -0.15 -3.46 16.84 2.25 0.04 -3.42 16 28 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 29 H 0.06 0.82 8.08 -51.93 -0.42 0.40 16 30 H 0.07 1.32 6.82 -51.93 -0.35 0.97 16 31 H 0.13 1.77 8.06 -52.48 -0.42 1.34 16 32 H 0.17 1.61 8.06 -52.49 -0.42 1.19 16 33 H 0.15 2.76 8.06 -52.49 -0.42 2.34 16 34 H 0.14 3.39 6.20 -52.49 -0.33 3.07 16 35 H 0.29 6.14 8.30 -40.82 -0.34 5.80 16 36 H 0.14 2.91 8.06 -52.49 -0.42 2.49 16 LS Contribution 323.84 15.07 4.88 4.88 Total: -1.00 -27.72 323.84 -8.18 -35.91 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: -3.13 Total: 10.21 kcal Atomic # 6 Polarization: -13.71 SS G_CDS: -5.40 Total: -19.11 kcal Atomic # 7 Polarization: -38.48 SS G_CDS: 0.41 Total: -38.06 kcal Atomic # 9 Polarization: -5.78 SS G_CDS: 0.08 Total: -5.70 kcal Atomic # 14 Polarization: 16.91 SS G_CDS: -5.03 Total: 11.88 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -27.72 -8.18 -35.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243885357.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.356 kcal (2) G-P(sol) polarization free energy of solvation -27.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds