Wall clock time and date at job start Tue Mar 31 2020 10:30:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46495 * 109.47430 * 2 1 4 4 N 1.39922 * 125.74963 * 269.99821 * 3 2 1 5 5 C 1.30418 * 108.95789 * 179.73785 * 4 3 2 6 6 C 1.50703 * 125.97356 * 180.24292 * 5 4 3 7 7 C 1.41337 * 108.04890 * 0.40722 * 5 4 3 8 8 C 1.47299 * 126.43518 * 179.85209 * 7 5 4 9 9 O 1.21613 * 120.00190 * 269.71632 * 8 7 5 10 10 N 1.34777 * 119.99559 * 89.71317 * 8 7 5 11 11 C 1.46499 * 119.99665 * 179.72407 * 10 8 7 12 12 C 1.50703 * 109.47138 * 180.28062 * 11 10 8 13 13 O 1.21293 * 120.00086 * 359.97438 * 12 11 10 14 14 N 1.34775 * 120.00069 * 180.02562 * 12 11 10 15 15 C 1.37097 * 120.00084 * 179.97438 * 14 12 11 16 16 H 1.08001 * 120.00027 * 359.97438 * 15 14 12 17 17 C 1.38954 * 119.99944 * 179.97438 * 15 14 12 18 18 N 1.31410 * 120.00276 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 119.99680 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46923 * 60.00279 * 19 17 15 21 21 H 1.48504 * 109.46709 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47176 * 300.00026 * 19 17 15 23 23 C 1.34354 * 125.74823 * 89.99867 * 3 2 1 24 24 Cl 1.73591 * 126.32008 * 359.96626 * 23 3 2 25 25 H 1.08991 * 109.47382 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47066 * 300.00234 * 1 2 3 27 27 H 1.08999 * 109.46563 * 59.99782 * 1 2 3 28 28 H 1.09001 * 109.47066 * 239.99766 * 2 1 3 29 29 H 1.08999 * 109.46563 * 120.00218 * 2 1 3 30 30 H 1.09000 * 109.47044 * 270.19554 * 6 5 4 31 31 H 1.09004 * 109.47203 * 30.19447 * 6 5 4 32 32 H 1.09004 * 109.47245 * 150.19694 * 6 5 4 33 33 H 0.97001 * 120.00485 * 0.02562 * 10 8 7 34 34 H 1.09009 * 109.47454 * 300.27637 * 11 10 8 35 35 H 1.08998 * 109.47492 * 60.27932 * 11 10 8 36 36 H 0.97002 * 120.00050 * 359.97438 * 14 12 11 37 37 H 0.96997 * 119.99888 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 7 2.2910 2.1519 -1.1356 5 6 2.7019 3.3309 -0.7588 6 6 3.0952 4.4644 -1.6707 7 6 2.7176 3.3583 0.6542 8 6 3.1186 4.4935 1.5028 9 8 4.2772 4.6114 1.8531 10 7 2.2014 5.4016 1.8909 11 6 2.5990 6.5274 2.7399 12 6 1.3950 7.3847 3.0338 13 8 0.3114 7.0852 2.5785 14 7 1.5224 8.4850 3.8017 15 6 0.4272 9.2652 4.0687 16 1 -0.5377 8.9984 3.6632 17 6 0.5584 10.3992 4.8609 18 7 1.7325 10.7241 5.3538 19 14 -0.9338 11.4627 5.2240 20 1 -1.9607 10.6515 5.9260 21 1 -0.5306 12.6040 6.0842 22 1 -1.4961 11.9782 3.9499 23 6 2.2801 2.1212 1.0904 24 17 2.1011 1.6176 2.7420 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3632 0.5139 -0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 4.1598 4.3979 -1.8947 31 1 2.5243 4.4004 -2.5971 32 1 2.8859 5.4150 -1.1799 33 1 1.2772 5.3075 1.6118 34 1 3.0126 6.1492 3.6749 35 1 3.3521 7.1232 2.2242 36 1 2.3890 8.7248 4.1656 37 1 1.8241 11.5160 5.9065 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322788624.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:30:08 Heat of formation + Delta-G solvation = -9.863752 kcal Electronic energy + Delta-G solvation = -23219.436388 eV Core-core repulsion = 19445.312797 eV Total energy + Delta-G solvation = -3774.123591 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.093 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.66770 -39.24147 -37.99443 -37.20983 -35.19354 -34.41015 -33.61630 -31.62369 -31.38222 -30.46770 -28.07791 -27.46309 -24.77260 -23.82089 -22.11571 -20.67642 -19.90319 -19.54631 -18.22054 -17.78991 -16.77423 -15.98938 -15.61357 -15.46432 -15.20442 -14.82616 -14.69082 -14.41163 -14.00794 -13.72293 -13.56267 -13.33666 -13.10923 -12.88894 -12.62602 -12.51661 -12.18904 -12.00896 -11.89770 -11.85113 -11.68738 -11.62345 -11.09796 -10.92402 -10.50009 -10.30687 -9.87445 -9.61507 -9.47545 -8.83182 -8.78218 -8.60961 -8.08926 -6.50329 -3.92293 1.08995 1.23436 2.16343 2.21637 2.70656 3.14603 3.22172 3.25366 3.47681 3.75561 4.05126 4.13834 4.47778 4.51876 4.74738 4.77892 4.89117 5.04357 5.17575 5.19396 5.22718 5.28648 5.48889 5.62280 5.66444 5.71063 5.92493 5.97705 6.08634 6.17693 6.34850 6.67807 7.24632 7.46938 7.82138 7.92979 8.43038 8.47897 9.05751 9.40555 9.88667 10.66522 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.020762 B = 0.002905 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.309980 B = 9636.742899 C = 9889.911691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.121 3.879 3 N -0.351 5.351 4 N -0.274 5.274 5 C 0.122 3.878 6 C -0.079 4.079 7 C -0.251 4.251 8 C 0.594 3.406 9 O -0.536 6.536 10 N -0.695 5.695 11 C 0.108 3.892 12 C 0.429 3.571 13 O -0.596 6.596 14 N -0.549 5.549 15 C -0.305 4.305 16 H 0.105 0.895 17 C 0.026 3.974 18 N -0.895 5.895 19 Si 0.933 3.067 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.272 1.272 23 C 0.160 3.840 24 Cl 0.013 6.987 25 H 0.081 0.919 26 H 0.065 0.935 27 H 0.069 0.931 28 H 0.104 0.896 29 H 0.096 0.904 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.412 0.588 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.396 0.604 37 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.520 -19.147 -9.713 21.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.001 3.999 3 N -0.134 5.134 4 N -0.097 5.097 5 C -0.044 4.044 6 C -0.137 4.137 7 C -0.267 4.267 8 C 0.378 3.622 9 O -0.413 6.413 10 N -0.349 5.349 11 C -0.020 4.020 12 C 0.214 3.786 13 O -0.483 6.483 14 N -0.184 5.184 15 C -0.435 4.435 16 H 0.123 0.877 17 C -0.177 4.177 18 N -0.535 5.535 19 Si 0.760 3.240 20 H -0.198 1.198 21 H -0.209 1.209 22 H -0.198 1.198 23 C 0.003 3.997 24 Cl 0.041 6.959 25 H 0.100 0.900 26 H 0.084 0.916 27 H 0.088 0.912 28 H 0.122 0.878 29 H 0.115 0.885 30 H 0.104 0.896 31 H 0.100 0.900 32 H 0.103 0.897 33 H 0.250 0.750 34 H 0.103 0.897 35 H 0.104 0.896 36 H 0.230 0.770 37 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.345 -20.005 -10.447 22.609 hybrid contribution -0.483 0.960 1.336 1.715 sum 0.863 -19.045 -9.111 21.130 Atomic orbital electron populations 1.22202 0.93432 1.03545 1.03805 1.21889 0.95956 0.76914 1.05131 1.48566 1.50285 1.12575 1.01929 1.77241 1.23352 1.03911 1.05189 1.22306 0.96329 0.94191 0.91616 1.20326 1.02545 0.93240 0.97598 1.19784 1.17997 0.94802 0.94155 1.17036 0.85069 0.80985 0.79156 1.90785 1.18498 1.75820 1.56193 1.45702 1.13121 1.25053 1.50995 1.21002 0.97042 0.88209 0.95712 1.19730 0.89550 0.84305 0.84993 1.90503 1.28001 1.73151 1.56601 1.41783 1.11954 1.21409 1.43233 1.19680 0.90225 1.04380 1.29183 0.87737 1.25315 0.98160 0.97751 0.96434 1.69604 1.23023 1.27044 1.33842 0.85884 0.80671 0.78910 0.78566 1.19794 1.20867 1.19771 1.21927 1.02012 0.92018 0.83772 1.98443 1.95936 1.90907 1.10627 0.90004 0.91591 0.91180 0.87775 0.88527 0.89582 0.89973 0.89698 0.74968 0.89684 0.89571 0.77019 0.91544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.11 10.24 37.16 0.38 -0.73 16 2 C 0.12 0.89 6.97 -4.04 -0.03 0.86 16 3 N -0.35 -4.06 3.58 -57.57 -0.21 -4.27 16 4 N -0.27 -3.55 12.49 33.90 0.42 -3.13 16 5 C 0.12 1.63 7.26 -82.01 -0.60 1.04 16 6 C -0.08 -0.83 10.28 36.01 0.37 -0.46 16 7 C -0.25 -3.75 5.88 -105.02 -0.62 -4.37 16 8 C 0.59 10.09 7.20 -12.58 -0.09 10.00 16 9 O -0.54 -10.53 17.11 5.27 0.09 -10.44 16 10 N -0.70 -12.00 5.52 -62.60 -0.35 -12.34 16 11 C 0.11 1.98 6.15 -5.19 -0.03 1.95 16 12 C 0.43 9.76 7.85 -10.98 -0.09 9.68 16 13 O -0.60 -15.20 15.24 5.55 0.08 -15.11 16 14 N -0.55 -13.51 5.29 -10.96 -0.06 -13.57 16 15 C -0.31 -8.25 9.68 -14.93 -0.14 -8.40 16 16 H 0.10 2.94 7.16 -52.49 -0.38 2.56 16 17 C 0.03 0.68 5.50 -17.47 -0.10 0.59 16 18 N -0.89 -23.80 13.05 55.50 0.72 -23.08 16 19 Si 0.93 20.48 29.55 -169.99 -5.02 15.45 16 20 H -0.27 -5.95 7.11 56.52 0.40 -5.54 16 21 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 22 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 23 C 0.16 2.11 7.54 -16.43 -0.12 1.99 16 24 Cl 0.01 0.15 28.56 -51.86 -1.48 -1.33 16 25 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.10 0.57 7.77 -51.93 -0.40 0.16 16 30 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.08 0.93 8.01 -51.93 -0.42 0.51 16 33 H 0.41 7.19 7.42 -40.82 -0.30 6.89 16 34 H 0.09 1.50 8.14 -51.92 -0.42 1.08 16 35 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 36 H 0.40 9.36 7.90 -40.82 -0.32 9.04 16 37 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 LS Contribution 347.97 15.07 5.24 5.24 Total: -1.00 -32.36 347.97 -5.95 -38.31 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: -4.34 Total: 12.11 kcal Atomic # 6 Polarization: 13.21 SS G_CDS: -1.06 Total: 12.15 kcal Atomic # 7 Polarization: -56.92 SS G_CDS: 0.54 Total: -56.39 kcal Atomic # 8 Polarization: -25.73 SS G_CDS: 0.17 Total: -25.55 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.45 kcal Atomic # 17 Polarization: 0.15 SS G_CDS: -1.48 Total: -1.33 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -32.36 -5.95 -38.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322788624.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.450 kcal (2) G-P(sol) polarization free energy of solvation -32.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds