Wall clock time and date at job start Tue Mar 31 2020 10:30:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46495 * 109.47430 * 2 1 4 4 N 1.39922 * 125.74963 * 269.99821 * 3 2 1 5 5 C 1.30418 * 108.95789 * 179.73785 * 4 3 2 6 6 C 1.50703 * 125.97356 * 180.24292 * 5 4 3 7 7 C 1.41337 * 108.04890 * 0.40722 * 5 4 3 8 8 C 1.47299 * 126.43518 * 179.85209 * 7 5 4 9 9 O 1.21613 * 120.00190 * 269.71632 * 8 7 5 10 10 N 1.34777 * 119.99559 * 89.71317 * 8 7 5 11 11 C 1.46499 * 119.99665 * 179.72407 * 10 8 7 12 12 C 1.50703 * 109.47138 * 180.28062 * 11 10 8 13 13 O 1.21293 * 120.00086 * 359.97438 * 12 11 10 14 14 N 1.34775 * 120.00069 * 180.02562 * 12 11 10 15 15 C 1.37097 * 120.00084 * 179.97438 * 14 12 11 16 16 H 1.08001 * 120.00027 * 359.97438 * 15 14 12 17 17 C 1.38954 * 119.99944 * 179.97438 * 15 14 12 18 18 N 1.31410 * 120.00276 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 119.99680 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46923 * 60.00279 * 19 17 15 21 21 H 1.48504 * 109.46709 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47176 * 300.00026 * 19 17 15 23 23 C 1.34354 * 125.74823 * 89.99867 * 3 2 1 24 24 Cl 1.73591 * 126.32008 * 359.96626 * 23 3 2 25 25 H 1.08991 * 109.47382 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47066 * 300.00234 * 1 2 3 27 27 H 1.08999 * 109.46563 * 59.99782 * 1 2 3 28 28 H 1.09001 * 109.47066 * 239.99766 * 2 1 3 29 29 H 1.08999 * 109.46563 * 120.00218 * 2 1 3 30 30 H 1.09000 * 109.47044 * 270.19554 * 6 5 4 31 31 H 1.09004 * 109.47203 * 30.19447 * 6 5 4 32 32 H 1.09004 * 109.47245 * 150.19694 * 6 5 4 33 33 H 0.97001 * 120.00485 * 0.02562 * 10 8 7 34 34 H 1.09009 * 109.47454 * 300.27637 * 11 10 8 35 35 H 1.08998 * 109.47492 * 60.27932 * 11 10 8 36 36 H 0.97002 * 120.00050 * 359.97438 * 14 12 11 37 37 H 0.96997 * 119.99888 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 7 2.2910 2.1519 -1.1356 5 6 2.7019 3.3309 -0.7588 6 6 3.0952 4.4644 -1.6707 7 6 2.7176 3.3583 0.6542 8 6 3.1186 4.4935 1.5028 9 8 4.2772 4.6114 1.8531 10 7 2.2014 5.4016 1.8909 11 6 2.5990 6.5274 2.7399 12 6 1.3950 7.3847 3.0338 13 8 0.3114 7.0852 2.5785 14 7 1.5224 8.4850 3.8017 15 6 0.4272 9.2652 4.0687 16 1 -0.5377 8.9984 3.6632 17 6 0.5584 10.3992 4.8609 18 7 1.7325 10.7241 5.3538 19 14 -0.9338 11.4627 5.2240 20 1 -1.9607 10.6515 5.9260 21 1 -0.5306 12.6040 6.0842 22 1 -1.4961 11.9782 3.9499 23 6 2.2801 2.1212 1.0904 24 17 2.1011 1.6176 2.7420 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3632 0.5139 -0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 4.1598 4.3979 -1.8947 31 1 2.5243 4.4004 -2.5971 32 1 2.8859 5.4150 -1.1799 33 1 1.2772 5.3075 1.6118 34 1 3.0126 6.1492 3.6749 35 1 3.3521 7.1232 2.2242 36 1 2.3890 8.7248 4.1656 37 1 1.8241 11.5160 5.9065 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322788624.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:30:08 Heat of formation + Delta-G solvation = -33.252371 kcal Electronic energy + Delta-G solvation = -23220.450595 eV Core-core repulsion = 19445.312797 eV Total energy + Delta-G solvation = -3775.137798 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.093 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.65915 -40.77219 -39.71773 -38.19057 -36.22916 -35.97844 -35.26483 -33.35903 -32.40834 -31.57343 -29.27737 -28.64646 -26.53023 -24.82284 -23.09996 -21.74035 -21.36880 -21.01980 -20.06178 -19.10871 -17.90088 -17.26931 -17.17333 -16.78145 -16.50165 -16.35698 -16.01141 -15.76441 -15.34676 -15.03889 -14.84337 -14.35975 -14.17396 -13.93596 -13.67621 -13.52458 -13.49829 -13.41884 -13.18204 -12.90886 -12.88448 -12.71390 -12.45050 -12.29429 -12.12811 -11.91616 -11.54493 -11.23602 -10.54393 -10.39465 -10.23774 -10.06753 -9.85970 -8.49082 -5.99084 0.10482 0.23249 1.12826 1.37132 1.37641 1.40484 1.44077 1.54737 1.93181 2.09446 2.34096 3.11880 3.18148 3.21392 3.65788 3.86805 3.96133 3.99282 4.14893 4.25090 4.26528 4.45774 4.46352 4.64506 4.69152 4.70069 4.74028 4.92946 5.15127 5.21264 5.27498 5.40094 5.50734 5.93524 6.27181 6.41802 6.51432 7.04811 7.07123 7.46407 7.97007 8.67588 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.020762 B = 0.002905 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.309980 B = 9636.742899 C = 9889.911691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.109 3.891 3 N -0.342 5.342 4 N -0.282 5.282 5 C 0.116 3.884 6 C -0.079 4.079 7 C -0.283 4.283 8 C 0.604 3.396 9 O -0.565 6.565 10 N -0.694 5.694 11 C 0.120 3.880 12 C 0.434 3.566 13 O -0.624 6.624 14 N -0.558 5.558 15 C -0.337 4.337 16 H 0.086 0.914 17 C -0.009 4.009 18 N -0.916 5.916 19 Si 0.995 3.005 20 H -0.270 1.270 21 H -0.272 1.272 22 H -0.270 1.270 23 C 0.160 3.840 24 Cl 0.022 6.978 25 H 0.111 0.889 26 H 0.053 0.947 27 H 0.057 0.943 28 H 0.123 0.877 29 H 0.114 0.886 30 H 0.096 0.904 31 H 0.099 0.901 32 H 0.077 0.923 33 H 0.412 0.588 34 H 0.097 0.903 35 H 0.102 0.898 36 H 0.399 0.601 37 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.219 -20.119 -10.092 22.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.009 4.009 3 N -0.124 5.124 4 N -0.105 5.105 5 C -0.050 4.050 6 C -0.137 4.137 7 C -0.299 4.299 8 C 0.389 3.611 9 O -0.443 6.443 10 N -0.347 5.347 11 C -0.008 4.008 12 C 0.221 3.779 13 O -0.512 6.512 14 N -0.194 5.194 15 C -0.467 4.467 16 H 0.104 0.896 17 C -0.210 4.210 18 N -0.556 5.556 19 Si 0.818 3.182 20 H -0.195 1.195 21 H -0.197 1.197 22 H -0.195 1.195 23 C 0.001 3.999 24 Cl 0.050 6.950 25 H 0.129 0.871 26 H 0.072 0.928 27 H 0.077 0.923 28 H 0.141 0.859 29 H 0.132 0.868 30 H 0.115 0.885 31 H 0.118 0.882 32 H 0.096 0.904 33 H 0.250 0.750 34 H 0.115 0.885 35 H 0.119 0.881 36 H 0.234 0.766 37 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.049 -21.005 -10.842 23.662 hybrid contribution -0.397 1.134 1.437 1.873 sum 0.652 -19.871 -9.405 21.994 Atomic orbital electron populations 1.22181 0.92607 1.05073 1.02565 1.22354 0.96614 0.75005 1.06945 1.48960 1.48888 1.13499 1.01052 1.77210 1.23566 1.03915 1.05801 1.22654 0.96086 0.94919 0.91294 1.20419 1.03499 0.91993 0.97789 1.19707 1.20577 0.94852 0.94746 1.17217 0.84333 0.80965 0.78537 1.90762 1.19605 1.76571 1.57407 1.45702 1.13217 1.24884 1.50876 1.20869 0.95007 0.88120 0.96775 1.20378 0.90353 0.83774 0.83375 1.90482 1.29676 1.73726 1.57266 1.41821 1.11626 1.21961 1.43985 1.19697 0.90350 1.05875 1.30735 0.89599 1.26100 1.00918 0.98326 0.95659 1.69670 1.24448 1.27515 1.33954 0.84956 0.77362 0.77370 0.78478 1.19540 1.19661 1.19475 1.21988 1.01418 0.91909 0.84601 1.98444 1.95839 1.90750 1.09929 0.87098 0.92813 0.92348 0.85934 0.86787 0.88520 0.88210 0.90405 0.75000 0.88510 0.88050 0.76646 0.91075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.83 10.24 71.98 0.74 -1.09 16 2 C 0.11 1.37 6.97 86.38 0.60 1.97 16 3 N -0.34 -7.42 3.58 -336.06 -1.20 -8.63 16 4 N -0.28 -6.94 12.49 -46.66 -0.58 -7.53 16 5 C 0.12 3.02 7.26 43.53 0.32 3.34 16 6 C -0.08 -1.59 10.28 71.24 0.73 -0.86 16 7 C -0.28 -8.28 5.88 -20.12 -0.12 -8.40 16 8 C 0.60 20.32 7.20 86.63 0.62 20.95 16 9 O -0.56 -21.99 17.11 -4.07 -0.07 -22.06 16 10 N -0.69 -23.78 5.52 -470.22 -2.60 -26.37 16 11 C 0.12 4.35 6.15 85.63 0.53 4.88 16 12 C 0.43 19.90 7.85 87.66 0.69 20.59 16 13 O -0.62 -32.18 15.24 -3.07 -0.05 -32.22 16 14 N -0.56 -27.80 5.29 -306.98 -1.62 -29.42 16 15 C -0.34 -18.47 9.68 84.04 0.81 -17.66 16 16 H 0.09 4.94 7.16 -2.91 -0.02 4.92 16 17 C -0.01 -0.48 5.50 84.93 0.47 -0.01 16 18 N -0.92 -48.42 13.05 21.66 0.28 -48.13 16 19 Si 1.00 41.56 29.55 68.60 2.03 43.59 16 20 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 21 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 22 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16 23 C 0.16 4.07 7.54 84.32 0.64 4.71 16 24 Cl 0.02 0.51 28.56 -2.72 -0.08 0.43 16 25 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 26 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.11 1.05 7.77 -2.39 -0.02 1.03 16 30 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.10 1.63 8.14 -2.38 -0.02 1.61 16 32 H 0.08 1.67 8.01 -2.39 -0.02 1.66 16 33 H 0.41 14.40 7.42 -92.71 -0.69 13.71 16 34 H 0.10 3.34 8.14 -2.38 -0.02 3.32 16 35 H 0.10 3.43 8.14 -2.39 -0.02 3.41 16 36 H 0.40 19.05 7.90 -92.71 -0.73 18.32 16 37 H 0.28 13.88 8.31 -92.71 -0.77 13.11 16 Total: -1.00 -68.71 347.97 1.85 -66.86 By element: Atomic # 1 Polarization: 35.37 SS G_CDS: -0.28 Total: 35.09 kcal Atomic # 6 Polarization: 22.38 SS G_CDS: 6.02 Total: 28.40 kcal Atomic # 7 Polarization: -114.36 SS G_CDS: -5.72 Total: -120.09 kcal Atomic # 8 Polarization: -54.17 SS G_CDS: -0.12 Total: -54.28 kcal Atomic # 14 Polarization: 41.56 SS G_CDS: 2.03 Total: 43.59 kcal Atomic # 17 Polarization: 0.51 SS G_CDS: -0.08 Total: 0.43 kcal Total: -68.71 1.85 -66.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322788624.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.611 kcal (2) G-P(sol) polarization free energy of solvation -68.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds