Wall clock time and date at job start Tue Mar 31 2020 11:08:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30738 * 1 3 3 Si 1.86800 * 120.00098 * 2 1 4 4 H 1.48507 * 109.47074 * 179.97438 * 3 2 1 5 5 H 1.48491 * 109.47415 * 299.99556 * 3 2 1 6 6 H 1.48497 * 109.47259 * 60.00237 * 3 2 1 7 7 C 1.40034 * 120.00000 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99890 * 179.97438 * 7 2 1 9 9 C 1.41312 * 119.99713 * 0.02562 * 7 2 1 10 10 C 1.40595 * 119.78109 * 179.97438 * 9 7 2 11 11 C 1.38351 * 119.14426 * 179.97438 * 10 9 7 12 12 C 1.38635 * 118.68021 * 0.27837 * 11 10 9 13 13 C 1.39759 * 119.49526 * 359.47075 * 12 11 10 14 14 N 1.38823 * 119.58654 * 180.27872 * 13 12 11 15 15 C 1.46495 * 120.00017 * 0.26010 * 14 13 12 16 16 H 1.09000 * 110.26875 * 35.61538 * 15 14 13 17 17 C 1.54345 * 110.30688 * 157.79619 * 15 14 13 18 18 C 1.54336 * 102.39533 * 145.27194 * 17 15 14 19 19 C 1.51378 * 105.17381 * 333.65138 * 18 17 15 20 20 C 1.38507 * 130.37421 * 197.19171 * 19 18 17 21 21 C 1.38089 * 120.23107 * 180.02562 * 20 19 18 22 22 C 1.38370 * 119.91994 * 359.97438 * 21 20 19 23 23 Cl 1.73601 * 120.04579 * 179.97438 * 22 21 20 24 24 C 1.38219 * 119.90901 * 0.02562 * 22 21 20 25 25 C 1.38231 * 109.75301 * 17.18705 * 19 18 17 26 26 N 1.31986 * 120.82521 * 0.54220 * 13 12 11 27 27 H 0.97005 * 119.99878 * 359.97438 * 1 2 3 28 28 H 1.07996 * 120.42621 * 359.97168 * 10 9 7 29 29 H 1.08002 * 120.65533 * 179.97438 * 11 10 9 30 30 H 1.08002 * 120.25227 * 179.70432 * 12 11 10 31 31 H 0.97001 * 119.99781 * 180.25266 * 14 13 12 32 32 H 1.08998 * 110.82406 * 263.50420 * 17 15 14 33 33 H 1.09007 * 110.81974 * 27.04903 * 17 15 14 34 34 H 1.08999 * 110.30624 * 214.72687 * 18 17 15 35 35 H 1.09003 * 110.30419 * 92.57412 * 18 17 15 36 36 H 1.08000 * 119.88555 * 359.97438 * 20 19 18 37 37 H 1.07997 * 120.03396 * 179.97438 * 21 20 19 38 38 H 1.07995 * 119.89939 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.7015 1.3463 0.0006 5 1 1.8828 2.3964 -1.2125 6 1 1.8827 2.3964 1.2125 7 6 2.0076 -1.2127 0.0005 8 1 3.0875 -1.2127 0.0001 9 6 1.3009 -2.4365 0.0005 10 6 2.0085 -3.6514 0.0005 11 6 1.3034 -4.8418 0.0011 12 6 -0.0821 -4.7944 -0.0043 13 6 -0.7283 -3.5551 0.0011 14 7 -2.1156 -3.5055 0.0016 15 6 -2.8930 -4.7472 0.0022 16 1 -2.3886 -5.5082 0.5977 17 6 -4.3130 -4.4899 0.5497 18 6 -5.1723 -5.4587 -0.2898 19 6 -4.4075 -5.6482 -1.5824 20 6 -4.8251 -6.1394 -2.8083 21 6 -3.9376 -6.2227 -3.8628 22 6 -2.6264 -5.8136 -3.6953 23 17 -1.5076 -5.9174 -5.0187 24 6 -2.2083 -5.3231 -2.4726 25 6 -3.0978 -5.2392 -1.4146 26 7 -0.0360 -2.4314 0.0006 27 1 -0.4850 0.8401 0.0004 28 1 3.0884 -3.6554 0.0001 29 1 1.8221 -5.7891 0.0007 30 1 -0.6578 -5.7082 -0.0088 31 1 -2.5702 -2.6486 0.0017 32 1 -4.3708 -4.7393 1.6092 33 1 -4.6135 -3.4564 0.3769 34 1 -6.1502 -5.0207 -0.4897 35 1 -5.2825 -6.4118 0.2275 36 1 -5.8483 -6.4593 -2.9395 37 1 -4.2665 -6.6066 -4.8172 38 1 -1.1848 -5.0043 -2.3419 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331332214.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:07 Heat of formation + Delta-G solvation = 41.667493 kcal Electronic energy + Delta-G solvation = -22975.984559 eV Core-core repulsion = 19614.944793 eV Total energy + Delta-G solvation = -3361.039766 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 314.088 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.39634 -39.92958 -38.01151 -36.91044 -35.60166 -34.54085 -32.48875 -31.83843 -30.66513 -29.64633 -27.39940 -27.00904 -23.83277 -23.49063 -22.74887 -21.82323 -21.40192 -19.27753 -18.22008 -17.61853 -17.01045 -16.63247 -16.43846 -16.19042 -16.00651 -15.53854 -14.91289 -14.71282 -14.67359 -14.34422 -14.23618 -13.91102 -13.64829 -13.12526 -12.90875 -12.76913 -12.72333 -12.66565 -12.43463 -12.35989 -12.23532 -12.18371 -11.83932 -11.73107 -11.61786 -11.30690 -10.68529 -9.87508 -9.85029 -9.45448 -9.42268 -8.31669 -8.23757 -6.48338 0.15435 0.30688 1.04469 1.14391 1.33734 1.40407 1.55339 1.56114 2.24210 2.50958 2.78224 2.91527 3.42052 3.59663 3.98520 4.02694 4.07468 4.16130 4.20551 4.34535 4.39921 4.58208 4.63813 4.77958 4.83537 4.92725 4.96923 4.99181 5.02435 5.07531 5.11444 5.23539 5.28296 5.34951 5.37838 5.59895 5.71106 5.86049 5.95683 6.06646 6.22040 6.55281 6.82989 6.93330 7.21591 8.34042 8.50597 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.014005 B = 0.004117 C = 0.003730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1998.739185 B = 6799.297388 C = 7505.754568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.751 5.751 2 C 0.027 3.973 3 Si 0.984 3.016 4 H -0.256 1.256 5 H -0.268 1.268 6 H -0.265 1.265 7 C -0.472 4.472 8 H 0.084 0.916 9 C 0.260 3.740 10 C -0.344 4.344 11 C -0.032 4.032 12 C -0.360 4.360 13 C 0.401 3.599 14 N -0.722 5.722 15 C 0.195 3.805 16 H 0.087 0.913 17 C -0.117 4.117 18 C -0.068 4.068 19 C -0.089 4.089 20 C -0.094 4.094 21 C -0.108 4.108 22 C -0.055 4.055 23 Cl -0.082 7.082 24 C -0.101 4.101 25 C -0.113 4.113 26 N -0.563 5.563 27 H 0.276 0.724 28 H 0.100 0.900 29 H 0.124 0.876 30 H 0.111 0.889 31 H 0.394 0.606 32 H 0.102 0.898 33 H 0.078 0.922 34 H 0.104 0.896 35 H 0.108 0.892 36 H 0.168 0.832 37 H 0.156 0.844 38 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.039 -10.228 -3.029 17.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.373 5.373 2 C -0.194 4.194 3 Si 0.805 3.195 4 H -0.180 1.180 5 H -0.193 1.193 6 H -0.189 1.189 7 C -0.504 4.504 8 H 0.102 0.898 9 C 0.133 3.867 10 C -0.367 4.367 11 C -0.056 4.056 12 C -0.386 4.386 13 C 0.161 3.839 14 N -0.356 5.356 15 C 0.089 3.911 16 H 0.105 0.895 17 C -0.155 4.155 18 C -0.105 4.105 19 C -0.089 4.089 20 C -0.111 4.111 21 C -0.127 4.127 22 C -0.081 4.081 23 Cl -0.054 7.054 24 C -0.120 4.120 25 C -0.115 4.115 26 N -0.286 5.286 27 H 0.086 0.914 28 H 0.118 0.882 29 H 0.142 0.858 30 H 0.129 0.871 31 H 0.228 0.772 32 H 0.121 0.879 33 H 0.097 0.903 34 H 0.123 0.877 35 H 0.126 0.874 36 H 0.185 0.815 37 H 0.174 0.826 38 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -14.567 -9.516 -3.124 17.679 hybrid contribution 1.585 0.286 -0.367 1.652 sum -12.982 -9.230 -3.491 16.307 Atomic orbital electron populations 1.70247 1.08716 1.28581 1.29746 1.26927 0.95737 1.04248 0.92523 0.85136 0.79413 0.76248 0.78737 1.17977 1.19272 1.18947 1.19952 0.94537 0.90563 1.45305 0.89757 1.18655 0.87733 0.93073 0.87218 1.21666 0.98877 0.93806 1.22329 1.20973 0.93859 0.97012 0.93731 1.20846 0.94679 0.95890 1.27194 1.18906 0.85968 0.90035 0.89038 1.44391 1.01352 1.07599 1.82274 1.20565 0.93214 0.86259 0.91062 0.89539 1.22615 0.90619 1.01016 1.01270 1.21083 0.98572 1.00756 0.90062 1.21043 0.94053 0.97252 0.96599 1.20915 1.00936 0.98915 0.90366 1.21235 0.90231 0.99985 1.01220 1.20941 0.92424 1.05639 0.89094 1.98350 1.62899 1.97033 1.47088 1.20584 1.00025 0.99426 0.92004 1.21187 0.94637 0.99459 0.96249 1.68194 1.07877 1.26099 1.26387 0.91361 0.88220 0.85813 0.87094 0.77163 0.87911 0.90289 0.87721 0.87398 0.81465 0.82614 0.88302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -41.26 11.46 21.84 0.25 -41.01 16 2 C 0.03 1.44 5.50 85.29 0.47 1.91 16 3 Si 0.98 39.48 29.56 68.60 2.03 41.51 16 4 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 5 H -0.27 -10.37 7.11 99.48 0.71 -9.66 16 6 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 7 C -0.47 -26.82 9.14 23.46 0.21 -26.61 16 8 H 0.08 4.54 7.85 -2.91 -0.02 4.52 16 9 C 0.26 15.19 6.55 40.19 0.26 15.46 16 10 C -0.34 -18.14 9.83 22.87 0.22 -17.91 16 11 C -0.03 -1.48 10.15 22.39 0.23 -1.25 16 12 C -0.36 -16.57 7.83 22.73 0.18 -16.39 16 13 C 0.40 19.73 7.28 133.40 0.97 20.70 16 14 N -0.72 -28.69 5.27 -324.83 -1.71 -30.40 16 15 C 0.19 5.80 2.80 44.92 0.13 5.93 16 16 H 0.09 2.66 6.53 -2.39 -0.02 2.64 16 17 C -0.12 -2.35 6.75 31.50 0.21 -2.14 16 18 C -0.07 -1.02 6.77 30.52 0.21 -0.81 16 19 C -0.09 -1.93 6.14 -19.59 -0.12 -2.05 16 20 C -0.09 -1.75 10.04 22.30 0.22 -1.52 16 21 C -0.11 -2.40 9.83 22.27 0.22 -2.18 16 22 C -0.05 -1.62 6.32 22.30 0.14 -1.48 16 23 Cl -0.08 -2.44 28.96 -2.72 -0.08 -2.52 16 24 C -0.10 -3.50 9.49 22.32 0.21 -3.29 16 25 C -0.11 -3.38 5.75 -19.59 -0.11 -3.49 16 26 N -0.56 -32.19 7.89 -186.59 -1.47 -33.66 16 27 H 0.28 13.65 8.29 -92.70 -0.77 12.88 16 28 H 0.10 4.95 8.06 -2.91 -0.02 4.93 16 29 H 0.12 4.88 8.06 -2.91 -0.02 4.86 16 30 H 0.11 4.54 6.22 -2.91 -0.02 4.52 16 31 H 0.39 15.90 8.51 -92.71 -0.79 15.12 16 32 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.08 1.64 7.80 -2.38 -0.02 1.62 16 34 H 0.10 1.11 8.14 -2.39 -0.02 1.10 16 35 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.17 1.78 8.06 -2.91 -0.02 1.76 16 37 H 0.16 2.60 8.06 -2.91 -0.02 2.58 16 38 H 0.10 4.19 6.52 -2.91 -0.02 4.17 16 Total: -1.00 -69.01 333.00 2.99 -66.03 By element: Atomic # 1 Polarization: 34.87 SS G_CDS: 0.32 Total: 35.19 kcal Atomic # 6 Polarization: -38.78 SS G_CDS: 3.66 Total: -35.13 kcal Atomic # 7 Polarization: -102.14 SS G_CDS: -2.93 Total: -105.07 kcal Atomic # 14 Polarization: 39.48 SS G_CDS: 2.03 Total: 41.51 kcal Atomic # 17 Polarization: -2.44 SS G_CDS: -0.08 Total: -2.52 kcal Total: -69.01 2.99 -66.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331332214.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.693 kcal (2) G-P(sol) polarization free energy of solvation -69.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.026 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds