Wall clock time and date at job start Tue Mar 31 2020 10:42:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 120.00078 * 2 1 4 4 H 1.48503 * 109.46994 * 275.81153 * 3 2 1 5 5 H 1.48502 * 109.46985 * 35.80984 * 3 2 1 6 6 H 1.48494 * 109.47232 * 155.80901 * 3 2 1 7 7 C 1.37883 * 120.00233 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99581 * 6.56864 * 7 2 1 9 9 C 1.50695 * 120.00040 * 186.56643 * 7 2 1 10 10 C 1.52996 * 115.55393 * 306.17624 * 9 7 2 11 11 O 1.45198 * 109.47110 * 280.21431 * 10 9 7 12 12 C 1.34231 * 117.00136 * 175.18000 * 11 10 9 13 13 O 1.20826 * 119.99921 * 5.02353 * 12 11 10 14 14 C 1.50697 * 120.00244 * 185.03264 * 12 11 10 15 15 C 1.50697 * 109.18715 * 282.80703 * 14 12 11 16 16 O 1.20825 * 120.00483 * 124.50387 * 15 14 12 17 17 O 1.34239 * 119.99715 * 304.50365 * 15 14 12 18 18 C 1.52581 * 109.22754 * 42.18389 * 14 12 11 19 19 C 1.53105 * 109.95546 * 49.64582 * 18 14 12 20 20 S 1.81752 * 108.83650 * 63.02897 * 19 18 14 21 21 C 1.81752 * 102.21928 * 306.73231 * 20 19 18 22 22 C 1.52581 * 109.22918 * 163.41945 * 14 12 11 23 23 C 1.52998 * 117.51565 * 91.87615 * 9 7 2 24 24 C 1.52996 * 117.49803 * 160.50429 * 9 7 2 25 25 H 0.97003 * 120.00225 * 359.97438 * 1 2 3 26 26 H 1.08995 * 109.47522 * 160.21282 * 10 9 7 27 27 H 1.09006 * 109.47052 * 40.21043 * 10 9 7 28 28 H 0.96698 * 116.99436 * 180.02562 * 17 15 14 29 29 H 1.08998 * 109.39724 * 169.79455 * 18 14 12 30 30 H 1.09004 * 109.39443 * 289.50333 * 18 14 12 31 31 H 1.09001 * 109.57172 * 182.83277 * 19 18 14 32 32 H 1.08998 * 109.57593 * 303.22099 * 19 18 14 33 33 H 1.09007 * 109.57259 * 293.46324 * 21 20 19 34 34 H 1.08996 * 109.67714 * 173.14070 * 21 20 19 35 35 H 1.09001 * 109.38478 * 70.50605 * 22 14 12 36 36 H 1.08998 * 109.38914 * 190.30160 * 22 14 12 37 37 H 1.08999 * 117.50289 * 214.96816 * 23 9 7 38 38 H 1.08995 * 117.50028 * 359.97438 * 23 9 7 39 39 H 1.09006 * 117.49780 * 359.97438 * 24 9 7 40 40 H 1.09003 * 117.50285 * 144.97586 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.3738 2.1173 -1.3929 5 1 1.5133 2.6141 0.8192 6 1 3.6026 1.4079 0.5737 7 6 2.0045 -1.1941 -0.0005 8 1 1.4699 -2.1262 -0.1079 9 6 3.5041 -1.1984 0.1487 10 6 4.2688 -0.3227 -0.8458 11 8 4.3828 -1.0183 -2.1152 12 6 4.9429 -0.3438 -3.1316 13 8 5.4071 0.7558 -2.9439 14 6 4.9925 -0.9578 -4.5070 15 6 6.0922 -1.9872 -4.5504 16 8 5.8448 -3.1219 -4.8837 17 8 7.3467 -1.6434 -4.2189 18 6 3.6579 -1.6356 -4.8030 19 6 2.5051 -0.6754 -4.4977 20 16 2.6299 0.7617 -5.6033 21 6 4.3374 1.3169 -5.3213 22 6 5.2838 0.1325 -5.5338 23 6 4.0733 -1.3229 1.5634 24 6 4.1658 -2.5037 0.5949 25 1 -0.4850 0.8401 0.0004 26 1 5.2647 -0.1138 -0.4552 27 1 3.7320 0.6147 -0.9922 28 1 8.0182 -2.3379 -4.2624 29 1 3.6222 -1.9210 -5.8544 30 1 3.5596 -2.5273 -4.1839 31 1 1.5543 -1.1821 -4.6632 32 1 2.5696 -0.3453 -3.4609 33 1 4.4376 1.6858 -4.3005 34 1 4.5852 2.1130 -6.0233 35 1 6.3147 0.4684 -5.4222 36 1 5.1404 -0.2680 -6.5374 37 1 4.9925 -0.7810 1.7856 38 1 3.3631 -1.4013 2.3865 39 1 3.5165 -3.3592 0.7809 40 1 5.1458 -2.7388 0.1796 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001605582042.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:42:20 Heat of formation + Delta-G solvation = -136.549681 kcal Electronic energy + Delta-G solvation = -26053.568479 eV Core-core repulsion = 22347.242672 eV Total energy + Delta-G solvation = -3706.325807 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 314.107 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.57522 -39.96581 -37.66479 -36.70657 -36.10225 -35.63191 -32.28678 -31.61211 -29.22517 -27.67842 -25.43333 -23.42127 -23.32194 -22.83620 -21.59432 -19.77372 -19.31306 -18.54644 -17.65943 -17.35385 -17.24630 -16.65692 -16.09973 -15.63655 -15.14658 -14.65963 -14.62124 -14.09695 -13.92990 -13.68488 -13.18800 -13.07016 -12.90915 -12.87857 -12.74902 -12.47799 -12.24502 -12.09461 -11.83859 -11.54406 -11.19189 -10.93528 -10.87607 -10.68121 -10.62709 -10.51772 -10.29899 -9.93875 -9.68904 -9.63869 -9.10577 -8.82718 -8.63611 -7.62258 -6.25123 -4.24709 1.69332 1.78499 2.04120 2.53741 2.67529 2.75470 3.15494 3.22456 3.29070 4.12170 4.22247 4.24353 4.50347 4.71863 4.80557 4.89664 5.12051 5.15028 5.19891 5.31930 5.34306 5.46424 5.55665 5.61757 5.71525 5.78409 5.86097 5.92814 6.00437 6.06061 6.14418 6.22056 6.38934 6.54001 6.67837 6.85989 7.02343 7.53295 7.57105 7.82319 8.36458 8.79000 9.36409 10.86471 Molecular weight = 314.11amu Principal moments of inertia in cm(-1) A = 0.013661 B = 0.006768 C = 0.005466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2049.205680 B = 4136.313327 C = 5120.925116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.081 3.919 3 Si 0.864 3.136 4 H -0.274 1.274 5 H -0.289 1.289 6 H -0.260 1.260 7 C -0.483 4.483 8 H 0.083 0.917 9 C -0.004 4.004 10 C 0.102 3.898 11 O -0.326 6.326 12 C 0.465 3.535 13 O -0.491 6.491 14 C -0.047 4.047 15 C 0.501 3.499 16 O -0.489 6.489 17 O -0.507 6.507 18 C -0.100 4.100 19 C -0.085 4.085 20 S -0.270 6.270 21 C -0.100 4.100 22 C -0.099 4.099 23 C -0.188 4.188 24 C -0.172 4.172 25 H 0.268 0.732 26 H 0.056 0.944 27 H 0.064 0.936 28 H 0.415 0.585 29 H 0.097 0.903 30 H 0.106 0.894 31 H 0.123 0.877 32 H 0.099 0.901 33 H 0.112 0.888 34 H 0.113 0.887 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.070 0.930 38 H 0.095 0.905 39 H 0.089 0.911 40 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.203 -1.081 -10.417 16.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.122 4.122 3 Si 0.694 3.306 4 H -0.201 1.201 5 H -0.216 1.216 6 H -0.185 1.185 7 C -0.520 4.520 8 H 0.101 0.899 9 C -0.005 4.005 10 C 0.030 3.970 11 O -0.241 6.241 12 C 0.306 3.694 13 O -0.380 6.380 14 C -0.050 4.050 15 C 0.341 3.659 16 O -0.375 6.375 17 O -0.319 6.319 18 C -0.139 4.139 19 C -0.233 4.233 20 S -0.044 6.044 21 C -0.248 4.248 22 C -0.138 4.138 23 C -0.225 4.225 24 C -0.209 4.209 25 H 0.078 0.922 26 H 0.074 0.926 27 H 0.081 0.919 28 H 0.275 0.725 29 H 0.115 0.885 30 H 0.124 0.876 31 H 0.142 0.858 32 H 0.118 0.882 33 H 0.130 0.870 34 H 0.131 0.869 35 H 0.115 0.885 36 H 0.115 0.885 37 H 0.089 0.911 38 H 0.114 0.886 39 H 0.107 0.893 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 10.984 -0.212 -11.051 15.582 hybrid contribution 1.809 0.188 0.907 2.033 sum 12.793 -0.024 -10.143 16.326 Atomic orbital electron populations 1.69859 1.06070 1.27265 1.48979 1.24923 0.94618 0.98676 0.94030 0.87243 0.80327 0.84406 0.78645 1.20054 1.21566 1.18520 1.20278 0.86318 0.94933 1.50440 0.89890 1.19291 0.95285 0.95666 0.90277 1.23578 0.98859 0.95250 0.79346 1.86578 1.71289 1.45669 1.20587 1.22710 0.75536 0.84431 0.86692 1.90580 1.43236 1.20335 1.83812 1.20567 0.95393 0.95969 0.93025 1.22390 0.82677 0.87621 0.73240 1.90752 1.83013 1.20772 1.42934 1.84558 1.19119 1.47359 1.80831 1.21718 0.88317 0.98991 1.04880 1.23629 1.02468 0.95159 1.02073 1.86793 1.18799 1.39553 1.59256 1.23839 0.92525 0.99939 1.08458 1.21675 1.01800 0.93012 0.97313 1.23164 1.01566 1.02687 0.95121 1.22685 1.00592 0.92847 1.04798 0.92232 0.92618 0.91851 0.72531 0.88471 0.87605 0.85834 0.88242 0.86994 0.86877 0.88504 0.88496 0.91111 0.88645 0.89251 0.90809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.84 13.96 55.43 0.77 -25.07 16 2 C 0.08 2.24 5.47 -17.82 -0.10 2.14 16 3 Si 0.86 21.16 24.72 -169.99 -4.20 16.95 16 4 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.26 -6.01 5.92 56.52 0.33 -5.68 16 7 C -0.48 -12.91 9.52 -34.44 -0.33 -13.24 16 8 H 0.08 2.41 8.06 -52.49 -0.42 1.99 16 9 C 0.00 -0.09 1.21 -155.67 -0.19 -0.28 16 10 C 0.10 2.21 4.12 37.16 0.15 2.37 16 11 O -0.33 -6.54 8.90 -39.26 -0.35 -6.89 16 12 C 0.46 8.28 4.50 36.00 0.16 8.44 16 13 O -0.49 -9.39 13.53 -18.75 -0.25 -9.64 16 14 C -0.05 -0.67 0.66 -157.24 -0.10 -0.77 16 15 C 0.50 6.61 6.87 36.00 0.25 6.86 16 16 O -0.49 -7.19 16.58 -18.75 -0.31 -7.50 16 17 O -0.51 -5.40 13.05 -39.28 -0.51 -5.91 16 18 C -0.10 -1.40 3.77 -26.89 -0.10 -1.50 16 19 C -0.09 -1.36 6.14 37.21 0.23 -1.13 16 20 S -0.27 -4.09 22.33 -107.50 -2.40 -6.49 16 21 C -0.10 -1.35 6.07 37.20 0.23 -1.12 16 22 C -0.10 -1.17 4.31 -26.90 -0.12 -1.29 16 23 C -0.19 -3.78 9.88 -26.73 -0.26 -4.04 16 24 C -0.17 -3.39 9.94 -26.73 -0.27 -3.65 16 25 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 26 H 0.06 1.12 7.95 -51.93 -0.41 0.71 16 27 H 0.06 1.49 2.83 -51.93 -0.15 1.34 16 28 H 0.42 2.30 9.10 45.56 0.41 2.72 16 29 H 0.10 1.16 8.06 -51.93 -0.42 0.74 16 30 H 0.11 1.57 7.78 -51.93 -0.40 1.16 16 31 H 0.12 1.82 8.14 -51.93 -0.42 1.40 16 32 H 0.10 1.92 6.21 -51.93 -0.32 1.60 16 33 H 0.11 1.83 5.24 -51.92 -0.27 1.56 16 34 H 0.11 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.10 1.06 7.92 -51.93 -0.41 0.65 16 36 H 0.10 0.95 8.06 -51.93 -0.42 0.53 16 37 H 0.07 1.28 8.09 -51.93 -0.42 0.86 16 38 H 0.10 1.94 8.14 -51.93 -0.42 1.51 16 39 H 0.09 1.74 8.14 -51.93 -0.42 1.32 16 40 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 LS Contribution 333.96 15.07 5.03 5.03 Total: -1.00 -31.36 333.96 -7.22 -38.58 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: -4.55 Total: 8.15 kcal Atomic # 6 Polarization: -6.77 SS G_CDS: -0.45 Total: -7.22 kcal Atomic # 7 Polarization: -25.84 SS G_CDS: 0.77 Total: -25.07 kcal Atomic # 8 Polarization: -28.52 SS G_CDS: -1.43 Total: -29.95 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -4.20 Total: 16.95 kcal Atomic # 16 Polarization: -4.09 SS G_CDS: -2.40 Total: -6.49 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -31.36 -7.22 -38.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605582042.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.971 kcal (2) G-P(sol) polarization free energy of solvation -31.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds