Wall clock time and date at job start Tue Mar 31 2020 10:42:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 120.00078 * 2 1 4 4 H 1.48503 * 109.46994 * 275.81153 * 3 2 1 5 5 H 1.48502 * 109.46985 * 35.80984 * 3 2 1 6 6 H 1.48494 * 109.47232 * 155.80901 * 3 2 1 7 7 C 1.37883 * 120.00233 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99581 * 6.56864 * 7 2 1 9 9 C 1.50695 * 120.00040 * 186.56643 * 7 2 1 10 10 C 1.52996 * 115.55393 * 306.17624 * 9 7 2 11 11 O 1.45198 * 109.47110 * 280.21431 * 10 9 7 12 12 C 1.34231 * 117.00136 * 175.18000 * 11 10 9 13 13 O 1.20826 * 119.99921 * 5.02353 * 12 11 10 14 14 C 1.50697 * 120.00244 * 185.03264 * 12 11 10 15 15 C 1.50697 * 109.18715 * 282.80703 * 14 12 11 16 16 O 1.20825 * 120.00483 * 124.50387 * 15 14 12 17 17 O 1.34239 * 119.99715 * 304.50365 * 15 14 12 18 18 C 1.52581 * 109.22754 * 42.18389 * 14 12 11 19 19 C 1.53105 * 109.95546 * 49.64582 * 18 14 12 20 20 S 1.81752 * 108.83650 * 63.02897 * 19 18 14 21 21 C 1.81752 * 102.21928 * 306.73231 * 20 19 18 22 22 C 1.52581 * 109.22918 * 163.41945 * 14 12 11 23 23 C 1.52998 * 117.51565 * 91.87615 * 9 7 2 24 24 C 1.52996 * 117.49803 * 160.50429 * 9 7 2 25 25 H 0.97003 * 120.00225 * 359.97438 * 1 2 3 26 26 H 1.08995 * 109.47522 * 160.21282 * 10 9 7 27 27 H 1.09006 * 109.47052 * 40.21043 * 10 9 7 28 28 H 0.96698 * 116.99436 * 180.02562 * 17 15 14 29 29 H 1.08998 * 109.39724 * 169.79455 * 18 14 12 30 30 H 1.09004 * 109.39443 * 289.50333 * 18 14 12 31 31 H 1.09001 * 109.57172 * 182.83277 * 19 18 14 32 32 H 1.08998 * 109.57593 * 303.22099 * 19 18 14 33 33 H 1.09007 * 109.57259 * 293.46324 * 21 20 19 34 34 H 1.08996 * 109.67714 * 173.14070 * 21 20 19 35 35 H 1.09001 * 109.38478 * 70.50605 * 22 14 12 36 36 H 1.08998 * 109.38914 * 190.30160 * 22 14 12 37 37 H 1.08999 * 117.50289 * 214.96816 * 23 9 7 38 38 H 1.08995 * 117.50028 * 359.97438 * 23 9 7 39 39 H 1.09006 * 117.49780 * 359.97438 * 24 9 7 40 40 H 1.09003 * 117.50285 * 144.97586 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.3738 2.1173 -1.3929 5 1 1.5133 2.6141 0.8192 6 1 3.6026 1.4079 0.5737 7 6 2.0045 -1.1941 -0.0005 8 1 1.4699 -2.1262 -0.1079 9 6 3.5041 -1.1984 0.1487 10 6 4.2688 -0.3227 -0.8458 11 8 4.3828 -1.0183 -2.1152 12 6 4.9429 -0.3438 -3.1316 13 8 5.4071 0.7558 -2.9439 14 6 4.9925 -0.9578 -4.5070 15 6 6.0922 -1.9872 -4.5504 16 8 5.8448 -3.1219 -4.8837 17 8 7.3467 -1.6434 -4.2189 18 6 3.6579 -1.6356 -4.8030 19 6 2.5051 -0.6754 -4.4977 20 16 2.6299 0.7617 -5.6033 21 6 4.3374 1.3169 -5.3213 22 6 5.2838 0.1325 -5.5338 23 6 4.0733 -1.3229 1.5634 24 6 4.1658 -2.5037 0.5949 25 1 -0.4850 0.8401 0.0004 26 1 5.2647 -0.1138 -0.4552 27 1 3.7320 0.6147 -0.9922 28 1 8.0182 -2.3379 -4.2624 29 1 3.6222 -1.9210 -5.8544 30 1 3.5596 -2.5273 -4.1839 31 1 1.5543 -1.1821 -4.6632 32 1 2.5696 -0.3453 -3.4609 33 1 4.4376 1.6858 -4.3005 34 1 4.5852 2.1130 -6.0233 35 1 6.3147 0.4684 -5.4222 36 1 5.1404 -0.2680 -6.5374 37 1 4.9925 -0.7810 1.7856 38 1 3.3631 -1.4013 2.3865 39 1 3.5165 -3.3592 0.7809 40 1 5.1458 -2.7388 0.1796 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001605582042.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:42:19 Heat of formation + Delta-G solvation = -156.217076 kcal Electronic energy + Delta-G solvation = -26054.421321 eV Core-core repulsion = 22347.242672 eV Total energy + Delta-G solvation = -3707.178649 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 314.107 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.78066 -41.16617 -39.19087 -37.78537 -37.44307 -36.93912 -34.38126 -32.71969 -30.45717 -29.28984 -27.39046 -24.58213 -24.51864 -23.94160 -23.17330 -21.25469 -20.91494 -19.62895 -19.01249 -18.70906 -18.50214 -18.18017 -17.61932 -16.99496 -16.62915 -16.09474 -15.79789 -15.49499 -15.15512 -14.99929 -14.90791 -14.51176 -14.24481 -14.21034 -13.96350 -13.93449 -13.62107 -13.32464 -13.11027 -12.89491 -12.74522 -12.56213 -12.34467 -12.20938 -12.02730 -11.77949 -11.68616 -11.52526 -11.49809 -10.98942 -10.83507 -10.72994 -10.50941 -8.83324 -8.39049 -6.40519 0.56853 0.61567 0.79759 1.19313 1.23050 1.30573 1.35962 1.45560 1.69362 2.19867 2.84712 3.00473 3.10808 3.23283 3.48939 3.68472 3.76402 3.80546 3.90177 4.01204 4.13179 4.16606 4.21000 4.34059 4.34650 4.53343 4.55936 4.69574 4.76754 4.78140 4.84034 4.86546 4.90014 5.13752 5.28834 5.34705 5.45006 5.58487 6.23068 6.38923 6.63018 6.72259 7.22964 8.76334 Molecular weight = 314.11amu Principal moments of inertia in cm(-1) A = 0.013661 B = 0.006768 C = 0.005466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2049.205680 B = 4136.313327 C = 5120.925116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.034 3.966 3 Si 0.917 3.083 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.234 1.234 7 C -0.478 4.478 8 H 0.043 0.957 9 C -0.039 4.039 10 C 0.106 3.894 11 O -0.338 6.338 12 C 0.461 3.539 13 O -0.505 6.505 14 C -0.047 4.047 15 C 0.511 3.489 16 O -0.506 6.506 17 O -0.501 6.501 18 C -0.093 4.093 19 C -0.085 4.085 20 S -0.282 6.282 21 C -0.095 4.095 22 C -0.094 4.094 23 C -0.173 4.173 24 C -0.154 4.154 25 H 0.267 0.733 26 H 0.077 0.923 27 H 0.042 0.958 28 H 0.438 0.562 29 H 0.123 0.877 30 H 0.093 0.907 31 H 0.125 0.875 32 H 0.058 0.942 33 H 0.083 0.917 34 H 0.142 0.858 35 H 0.113 0.887 36 H 0.126 0.874 37 H 0.101 0.899 38 H 0.089 0.911 39 H 0.084 0.916 40 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.436 -0.933 -11.450 19.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.165 4.165 3 Si 0.745 3.255 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.158 1.158 7 C -0.516 4.516 8 H 0.061 0.939 9 C -0.040 4.040 10 C 0.033 3.967 11 O -0.254 6.254 12 C 0.304 3.696 13 O -0.394 6.394 14 C -0.049 4.049 15 C 0.351 3.649 16 O -0.393 6.393 17 O -0.316 6.316 18 C -0.132 4.132 19 C -0.233 4.233 20 S -0.056 6.056 21 C -0.242 4.242 22 C -0.133 4.133 23 C -0.211 4.211 24 C -0.191 4.191 25 H 0.077 0.923 26 H 0.095 0.905 27 H 0.060 0.940 28 H 0.302 0.698 29 H 0.141 0.859 30 H 0.112 0.888 31 H 0.143 0.857 32 H 0.076 0.924 33 H 0.101 0.899 34 H 0.160 0.840 35 H 0.131 0.869 36 H 0.144 0.856 37 H 0.119 0.881 38 H 0.107 0.893 39 H 0.103 0.897 40 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 14.271 -0.082 -12.072 18.692 hybrid contribution 0.820 0.074 1.206 1.460 sum 15.091 -0.008 -10.866 18.596 Atomic orbital electron populations 1.69984 1.07707 1.27952 1.51553 1.25554 0.95103 1.01733 0.94134 0.86370 0.80440 0.80587 0.78094 1.21058 1.21794 1.15780 1.20406 0.88929 0.93206 1.49058 0.93877 1.19215 0.93082 0.99018 0.92680 1.23309 0.99242 0.94026 0.80087 1.86583 1.72047 1.46019 1.20713 1.23392 0.74599 0.84338 0.87320 1.90571 1.43787 1.20863 1.84148 1.20691 0.96054 0.97032 0.91139 1.22017 0.83155 0.86760 0.72977 1.90760 1.83449 1.21191 1.43949 1.84504 1.18629 1.48465 1.80020 1.21681 0.87648 0.97771 1.06137 1.23531 1.03738 0.96158 0.99886 1.86794 1.21136 1.39447 1.58238 1.23891 0.91400 1.01484 1.07472 1.21781 1.02050 0.91577 0.97856 1.23203 1.02136 1.02511 0.93217 1.22744 1.01193 0.91720 1.03443 0.92336 0.90527 0.93998 0.69793 0.85850 0.88841 0.85724 0.92352 0.89897 0.84022 0.86853 0.85568 0.88104 0.89271 0.89717 0.88158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.91 13.96 21.45 0.30 -56.61 16 2 C 0.03 1.92 5.47 84.66 0.46 2.39 16 3 Si 0.92 44.54 24.72 68.60 1.70 46.24 16 4 H -0.28 -14.03 7.11 99.48 0.71 -13.32 16 5 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 6 H -0.23 -10.26 5.92 99.48 0.59 -9.67 16 7 C -0.48 -26.40 9.52 25.60 0.24 -26.15 16 8 H 0.04 2.64 8.06 -2.91 -0.02 2.62 16 9 C -0.04 -1.74 1.21 -52.93 -0.06 -1.80 16 10 C 0.11 4.46 4.12 71.98 0.30 4.76 16 11 O -0.34 -13.33 8.90 -51.42 -0.46 -13.79 16 12 C 0.46 15.82 4.50 71.24 0.32 16.14 16 13 O -0.50 -18.55 13.53 21.97 0.30 -18.26 16 14 C -0.05 -1.22 0.66 -53.95 -0.04 -1.26 16 15 C 0.51 12.00 6.87 71.23 0.49 12.49 16 16 O -0.51 -13.59 16.58 21.97 0.36 -13.22 16 17 O -0.50 -8.85 13.05 -51.50 -0.67 -9.52 16 18 C -0.09 -2.52 3.77 30.49 0.11 -2.40 16 19 C -0.09 -2.74 6.14 72.02 0.44 -2.30 16 20 S -0.28 -8.31 22.33 -56.49 -1.26 -9.57 16 21 C -0.09 -2.37 6.07 72.01 0.44 -1.93 16 22 C -0.09 -1.93 4.31 30.49 0.13 -1.80 16 23 C -0.17 -6.55 9.88 30.59 0.30 -6.24 16 24 C -0.15 -5.75 9.94 30.59 0.30 -5.45 16 25 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 26 H 0.08 2.87 7.95 -2.39 -0.02 2.85 16 27 H 0.04 1.94 2.83 -2.38 -0.01 1.94 16 28 H 0.44 3.16 9.10 -74.06 -0.67 2.48 16 29 H 0.12 2.67 8.06 -2.39 -0.02 2.65 16 30 H 0.09 2.75 7.78 -2.39 -0.02 2.73 16 31 H 0.12 3.83 8.14 -2.39 -0.02 3.81 16 32 H 0.06 2.36 6.21 -2.39 -0.01 2.34 16 33 H 0.08 2.62 5.24 -2.38 -0.01 2.61 16 34 H 0.14 2.68 8.14 -2.39 -0.02 2.66 16 35 H 0.11 2.02 7.92 -2.39 -0.02 2.00 16 36 H 0.13 1.92 8.06 -2.39 -0.02 1.90 16 37 H 0.10 3.23 8.09 -2.39 -0.02 3.21 16 38 H 0.09 3.47 8.14 -2.39 -0.02 3.45 16 39 H 0.08 3.22 8.14 -2.38 -0.02 3.20 16 40 H 0.10 3.23 8.14 -2.39 -0.02 3.21 16 Total: -1.00 -70.25 333.96 4.00 -66.25 By element: Atomic # 1 Polarization: 21.75 SS G_CDS: 0.29 Total: 22.04 kcal Atomic # 6 Polarization: -17.01 SS G_CDS: 3.45 Total: -13.56 kcal Atomic # 7 Polarization: -56.91 SS G_CDS: 0.30 Total: -56.61 kcal Atomic # 8 Polarization: -54.32 SS G_CDS: -0.47 Total: -54.79 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 1.70 Total: 46.24 kcal Atomic # 16 Polarization: -8.31 SS G_CDS: -1.26 Total: -9.57 kcal Total: -70.25 4.00 -66.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605582042.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.972 kcal (2) G-P(sol) polarization free energy of solvation -70.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds