Wall clock time and date at job start Tue Mar 31 2020 10:16:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.46995 * 2 1 4 4 N 1.46502 * 109.47136 * 180.02562 * 3 2 1 5 5 C 1.38535 * 124.80388 * 89.99472 * 4 3 2 6 6 C 1.39095 * 132.29394 * 359.97438 * 5 4 3 7 7 C 1.37844 * 120.06722 * 179.97438 * 6 5 4 8 8 C 1.38653 * 120.58238 * 359.74947 * 7 6 5 9 9 C 1.37816 * 120.22587 * 0.50638 * 8 7 6 10 10 C 1.39338 * 119.79065 * 359.49346 * 9 8 7 11 11 C 1.47237 * 133.56701 * 180.25785 * 10 9 8 12 12 N 1.32581 * 134.21508 * 359.97438 * 11 10 9 13 13 N 1.28904 * 120.06564 * 180.02562 * 12 11 10 14 14 C 1.32931 * 121.56308 * 359.97438 * 13 12 11 15 15 S 1.76196 * 119.36125 * 179.97438 * 14 13 12 16 16 C 1.76209 * 99.99801 * 0.02562 * 15 14 13 17 17 H 1.08005 * 119.99684 * 0.02562 * 16 15 14 18 18 C 1.38780 * 120.00055 * 180.02562 * 16 15 14 19 19 N 1.31568 * 119.99724 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 119.99788 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47215 * 60.00209 * 20 18 16 22 22 H 1.48509 * 109.46971 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.47393 * 300.00262 * 20 18 16 24 24 N 1.32689 * 121.28562 * 0.02562 * 14 13 12 25 25 C 1.32911 * 119.29686 * 0.02562 * 24 14 13 26 26 H 1.08992 * 109.46951 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.46838 * 300.00244 * 1 2 3 28 28 H 1.08998 * 109.47232 * 60.00361 * 1 2 3 29 29 H 1.08994 * 109.47459 * 239.99886 * 2 1 3 30 30 H 1.09005 * 109.46952 * 119.99374 * 2 1 3 31 31 H 1.08998 * 109.47743 * 60.00029 * 3 2 1 32 32 H 1.09005 * 109.46760 * 299.99492 * 3 2 1 33 33 H 1.07999 * 119.96339 * 0.02562 * 6 5 4 34 34 H 1.07997 * 119.71414 * 179.97438 * 7 6 5 35 35 H 1.08000 * 119.88817 * 180.25677 * 8 7 6 36 36 H 1.08002 * 120.10828 * 179.77597 * 9 8 7 37 37 H 0.97005 * 119.99254 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.2952 1.4426 -1.1385 6 6 3.9841 1.4422 -2.4942 7 6 4.9923 1.4430 -3.4342 8 6 6.3222 1.4493 -3.0421 9 6 6.6510 1.4445 -1.7038 10 6 5.6419 1.4438 -0.7430 11 6 5.6426 1.4441 0.7294 12 7 6.5933 1.4446 1.6535 13 7 6.2788 1.4443 2.9036 14 6 5.0106 1.4438 3.3020 15 16 4.6467 1.4426 5.0260 16 6 6.2814 1.4432 5.6837 17 1 7.1315 1.4445 5.0175 18 6 6.4765 1.4420 7.0577 19 7 5.4409 1.4399 7.8692 20 14 8.2095 1.4418 7.7549 21 1 8.9296 2.6550 7.2914 22 1 8.1461 1.4410 9.2387 23 1 8.9304 0.2300 7.2891 24 7 4.0133 1.4433 2.4267 25 6 4.2891 1.4426 1.1265 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.6767 1.9564 0.8899 32 1 1.6766 1.9563 -0.8901 33 1 2.9515 1.4422 -2.8106 34 1 4.7442 1.4423 -4.4853 35 1 7.1032 1.4541 -3.7881 36 1 7.6876 1.4458 -1.4006 37 1 5.5773 1.4387 8.8296 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000046585194.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:16:11 Heat of formation + Delta-G solvation = 106.597480 kcal Electronic energy + Delta-G solvation = -22560.417802 eV Core-core repulsion = 19236.530069 eV Total energy + Delta-G solvation = -3323.887733 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 314.090 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.88123 -39.45548 -37.20142 -34.60592 -33.89882 -32.83619 -31.92657 -29.91055 -29.71914 -26.98110 -25.88910 -24.79798 -23.80573 -22.40083 -21.54551 -21.07623 -18.74756 -18.24169 -17.73017 -16.58746 -16.04938 -15.73518 -15.41025 -15.06908 -14.97009 -14.53888 -14.16384 -14.10783 -13.88642 -13.24761 -13.14933 -12.44885 -12.38839 -12.10763 -11.90960 -11.64283 -11.49401 -11.31132 -11.23082 -11.22735 -11.10702 -10.94586 -10.89270 -10.47376 -10.20631 -9.70473 -9.38028 -9.26195 -8.55699 -8.37849 -7.89002 -7.03775 -6.62347 -4.33997 0.71211 1.03116 1.74846 1.91892 2.22213 2.69706 3.17100 3.17293 3.23449 3.72934 3.87416 4.18766 4.20557 4.34655 4.47791 4.64011 4.73936 4.81876 4.84799 4.90577 5.01850 5.06197 5.12311 5.15547 5.35811 5.37685 5.48685 5.52624 5.68120 5.77269 5.83676 5.88763 5.94954 6.06117 6.32807 6.41464 6.48430 6.61795 6.99112 7.02628 7.43786 7.64339 8.27101 8.89476 9.23753 10.44136 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.016903 B = 0.003841 C = 0.003173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1656.104706 B = 7287.794657 C = 8821.967387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.142 4.142 3 C 0.116 3.884 4 N -0.486 5.486 5 C 0.150 3.850 6 C -0.137 4.137 7 C -0.086 4.086 8 C -0.149 4.149 9 C -0.052 4.052 10 C -0.064 4.064 11 C -0.059 4.059 12 N -0.134 5.134 13 N -0.292 5.292 14 C 0.221 3.779 15 S 0.225 5.775 16 C -0.553 4.553 17 H 0.114 0.886 18 C 0.080 3.920 19 N -0.868 5.868 20 Si 0.936 3.064 21 H -0.267 1.267 22 H -0.281 1.281 23 H -0.267 1.267 24 N -0.508 5.508 25 C 0.368 3.632 26 H 0.059 0.941 27 H 0.060 0.940 28 H 0.055 0.945 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.095 0.905 32 H 0.087 0.913 33 H 0.124 0.876 34 H 0.128 0.872 35 H 0.127 0.873 36 H 0.131 0.869 37 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.431 -0.694 -19.438 20.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.181 4.181 3 C -0.005 4.005 4 N -0.182 5.182 5 C 0.046 3.954 6 C -0.158 4.158 7 C -0.106 4.106 8 C -0.168 4.168 9 C -0.072 4.072 10 C -0.071 4.071 11 C -0.214 4.214 12 N 0.011 4.989 13 N -0.152 5.152 14 C -0.148 4.148 15 S 0.468 5.532 16 C -0.702 4.702 17 H 0.132 0.868 18 C -0.131 4.131 19 N -0.501 5.501 20 Si 0.760 3.240 21 H -0.192 1.192 22 H -0.206 1.206 23 H -0.192 1.192 24 N -0.241 5.241 25 C 0.112 3.888 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.074 0.926 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.114 0.886 32 H 0.105 0.895 33 H 0.142 0.858 34 H 0.146 0.854 35 H 0.145 0.855 36 H 0.149 0.851 37 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -7.165 -0.684 -17.499 18.922 hybrid contribution 1.278 -0.019 -0.745 1.480 sum -5.887 -0.703 -18.244 19.184 Atomic orbital electron populations 1.21672 0.94422 1.02289 1.02103 1.21926 0.96643 0.96237 1.03262 1.21860 0.76034 0.98313 1.04330 1.43560 1.05583 1.67659 1.01362 1.18190 0.88953 1.00566 0.87669 1.20009 1.00057 1.07440 0.88335 1.20841 0.92255 0.98746 0.98777 1.20928 0.96401 1.04188 0.95283 1.20639 0.98667 0.96480 0.91458 1.18272 0.92614 1.06738 0.89478 1.21274 0.91897 1.13515 0.94719 1.73186 1.28926 1.00880 0.95888 1.74401 1.16839 1.18581 1.05418 1.27587 0.87773 0.94955 1.04512 1.83693 1.12309 1.76781 0.80375 1.23644 0.93468 1.58263 0.94790 0.86825 1.25185 0.99703 0.92767 0.95473 1.69920 1.30663 1.44714 1.04799 0.85918 0.81059 0.79784 0.77196 1.19167 1.20640 1.19164 1.68230 1.35522 1.22570 0.97749 1.19057 0.88826 0.92540 0.88339 0.92148 0.92096 0.92581 0.91535 0.90970 0.88646 0.89487 0.85759 0.85365 0.85480 0.85086 0.91122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.91 37.16 0.37 -0.84 16 2 C -0.14 -1.52 6.26 -26.73 -0.17 -1.69 16 3 C 0.12 1.35 5.96 -4.04 -0.02 1.33 16 4 N -0.49 -7.53 2.81 -113.27 -0.32 -7.85 16 5 C 0.15 2.14 6.77 -83.72 -0.57 1.57 16 6 C -0.14 -1.44 9.85 -39.41 -0.39 -1.83 16 7 C -0.09 -0.79 10.01 -39.57 -0.40 -1.19 16 8 C -0.15 -1.50 10.03 -39.58 -0.40 -1.89 16 9 C -0.05 -0.69 10.09 -39.33 -0.40 -1.09 16 10 C -0.06 -1.05 6.35 -105.03 -0.67 -1.72 16 11 C -0.06 -1.22 7.61 -82.82 -0.63 -1.85 16 12 N -0.13 -3.08 11.67 33.34 0.39 -2.69 16 13 N -0.29 -7.37 9.61 30.24 0.29 -7.08 16 14 C 0.22 5.43 7.89 -90.40 -0.71 4.72 16 15 S 0.22 5.74 21.84 -107.50 -2.35 3.39 16 16 C -0.55 -15.17 9.25 30.93 0.29 -14.89 16 17 H 0.11 3.17 6.51 -52.48 -0.34 2.83 16 18 C 0.08 2.11 5.49 -17.46 -0.10 2.02 16 19 N -0.87 -23.63 13.22 55.49 0.73 -22.89 16 20 Si 0.94 20.69 29.55 -169.99 -5.02 15.67 16 21 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 22 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 23 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 24 N -0.51 -11.31 10.53 -12.49 -0.13 -11.44 16 25 C 0.37 7.34 7.87 -155.47 -1.22 6.11 16 26 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.10 1.19 8.13 -51.93 -0.42 0.77 16 32 H 0.09 0.76 7.90 -51.93 -0.41 0.35 16 33 H 0.12 0.99 7.91 -52.49 -0.42 0.57 16 34 H 0.13 0.78 8.06 -52.49 -0.42 0.35 16 35 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 36 H 0.13 1.61 8.06 -52.49 -0.42 1.19 16 37 H 0.28 7.04 8.31 -40.82 -0.34 6.71 16 LS Contribution 337.54 15.07 5.09 5.09 Total: -1.00 -30.94 337.54 -10.44 -41.38 By element: Atomic # 1 Polarization: 1.77 SS G_CDS: -4.11 Total: -2.33 kcal Atomic # 6 Polarization: -6.23 SS G_CDS: -5.01 Total: -11.24 kcal Atomic # 7 Polarization: -52.92 SS G_CDS: 0.96 Total: -51.96 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Atomic # 16 Polarization: 5.74 SS G_CDS: -2.35 Total: 3.39 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.94 -10.44 -41.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000046585194.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.980 kcal (2) G-P(sol) polarization free energy of solvation -30.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.383 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds