Wall clock time and date at job start Tue Mar 31 2020 10:16:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.46995 * 2 1 4 4 N 1.46502 * 109.47136 * 180.02562 * 3 2 1 5 5 C 1.38535 * 124.80388 * 89.99472 * 4 3 2 6 6 C 1.39095 * 132.29394 * 359.97438 * 5 4 3 7 7 C 1.37844 * 120.06722 * 179.97438 * 6 5 4 8 8 C 1.38653 * 120.58238 * 359.74947 * 7 6 5 9 9 C 1.37816 * 120.22587 * 0.50638 * 8 7 6 10 10 C 1.39338 * 119.79065 * 359.49346 * 9 8 7 11 11 C 1.47237 * 133.56701 * 180.25785 * 10 9 8 12 12 N 1.32581 * 134.21508 * 359.97438 * 11 10 9 13 13 N 1.28904 * 120.06564 * 180.02562 * 12 11 10 14 14 C 1.32931 * 121.56308 * 359.97438 * 13 12 11 15 15 S 1.76196 * 119.36125 * 179.97438 * 14 13 12 16 16 C 1.76209 * 99.99801 * 0.02562 * 15 14 13 17 17 H 1.08005 * 119.99684 * 0.02562 * 16 15 14 18 18 C 1.38780 * 120.00055 * 180.02562 * 16 15 14 19 19 N 1.31568 * 119.99724 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 119.99788 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47215 * 60.00209 * 20 18 16 22 22 H 1.48509 * 109.46971 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.47393 * 300.00262 * 20 18 16 24 24 N 1.32689 * 121.28562 * 0.02562 * 14 13 12 25 25 C 1.32911 * 119.29686 * 0.02562 * 24 14 13 26 26 H 1.08992 * 109.46951 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.46838 * 300.00244 * 1 2 3 28 28 H 1.08998 * 109.47232 * 60.00361 * 1 2 3 29 29 H 1.08994 * 109.47459 * 239.99886 * 2 1 3 30 30 H 1.09005 * 109.46952 * 119.99374 * 2 1 3 31 31 H 1.08998 * 109.47743 * 60.00029 * 3 2 1 32 32 H 1.09005 * 109.46760 * 299.99492 * 3 2 1 33 33 H 1.07999 * 119.96339 * 0.02562 * 6 5 4 34 34 H 1.07997 * 119.71414 * 179.97438 * 7 6 5 35 35 H 1.08000 * 119.88817 * 180.25677 * 8 7 6 36 36 H 1.08002 * 120.10828 * 179.77597 * 9 8 7 37 37 H 0.97005 * 119.99254 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.2952 1.4426 -1.1385 6 6 3.9841 1.4422 -2.4942 7 6 4.9923 1.4430 -3.4342 8 6 6.3222 1.4493 -3.0421 9 6 6.6510 1.4445 -1.7038 10 6 5.6419 1.4438 -0.7430 11 6 5.6426 1.4441 0.7294 12 7 6.5933 1.4446 1.6535 13 7 6.2788 1.4443 2.9036 14 6 5.0106 1.4438 3.3020 15 16 4.6467 1.4426 5.0260 16 6 6.2814 1.4432 5.6837 17 1 7.1315 1.4445 5.0175 18 6 6.4765 1.4420 7.0577 19 7 5.4409 1.4399 7.8692 20 14 8.2095 1.4418 7.7549 21 1 8.9296 2.6550 7.2914 22 1 8.1461 1.4410 9.2387 23 1 8.9304 0.2300 7.2891 24 7 4.0133 1.4433 2.4267 25 6 4.2891 1.4426 1.1265 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.6767 1.9564 0.8899 32 1 1.6766 1.9563 -0.8901 33 1 2.9515 1.4422 -2.8106 34 1 4.7442 1.4423 -4.4853 35 1 7.1032 1.4541 -3.7881 36 1 7.6876 1.4458 -1.4006 37 1 5.5773 1.4387 8.8296 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000046585194.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:16:11 Heat of formation + Delta-G solvation = 88.996541 kcal Electronic energy + Delta-G solvation = -22561.181036 eV Core-core repulsion = 19236.530069 eV Total energy + Delta-G solvation = -3324.650967 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 314.090 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.33506 -40.89811 -38.27989 -35.63232 -35.58061 -34.82083 -33.12469 -31.15246 -30.84737 -28.23898 -27.72309 -26.25888 -25.25507 -23.36787 -22.69844 -22.15128 -20.40302 -19.75354 -19.27293 -17.85259 -17.39525 -17.23939 -17.02874 -16.85628 -15.95069 -15.59050 -15.43688 -15.19796 -14.99256 -14.78803 -14.17400 -13.69050 -13.45307 -13.34475 -13.17327 -13.05420 -13.02872 -12.95992 -12.79641 -12.48321 -12.32296 -12.15654 -12.05678 -11.83093 -11.78484 -11.29857 -11.21213 -10.89766 -10.17414 -9.85345 -9.03794 -8.88895 -8.58997 -6.39937 -0.71336 -0.44011 0.54864 0.59784 0.67993 1.18817 1.35567 1.41738 1.49752 2.06922 2.40366 2.62272 2.82430 2.85192 2.85678 3.02741 3.30005 3.56911 3.68891 3.85618 4.02750 4.06842 4.22198 4.23185 4.33011 4.46418 4.51011 4.54339 4.62995 4.79236 5.00711 5.06178 5.11005 5.21319 5.33442 5.40060 5.42571 5.48443 5.56506 5.62941 5.95577 6.17065 6.19795 6.87874 7.48203 8.49807 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.016903 B = 0.003841 C = 0.003173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1656.104706 B = 7287.794657 C = 8821.967387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.135 4.135 3 C 0.108 3.892 4 N -0.474 5.474 5 C 0.140 3.860 6 C -0.125 4.125 7 C -0.061 4.061 8 C -0.132 4.132 9 C -0.064 4.064 10 C -0.110 4.110 11 C -0.047 4.047 12 N -0.169 5.169 13 N -0.332 5.332 14 C 0.222 3.778 15 S 0.172 5.828 16 C -0.575 4.575 17 H 0.098 0.902 18 C 0.036 3.964 19 N -0.899 5.899 20 Si 1.000 3.000 21 H -0.265 1.265 22 H -0.263 1.263 23 H -0.265 1.265 24 N -0.514 5.514 25 C 0.352 3.648 26 H 0.065 0.935 27 H 0.052 0.948 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.034 0.966 31 H 0.081 0.919 32 H 0.132 0.868 33 H 0.164 0.836 34 H 0.179 0.821 35 H 0.164 0.836 36 H 0.129 0.871 37 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.326 -0.609 -25.188 26.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.174 4.174 3 C -0.012 4.012 4 N -0.169 5.169 5 C 0.037 3.963 6 C -0.146 4.146 7 C -0.080 4.080 8 C -0.151 4.151 9 C -0.084 4.084 10 C -0.116 4.116 11 C -0.205 4.205 12 N -0.019 5.019 13 N -0.189 5.189 14 C -0.150 4.150 15 S 0.412 5.588 16 C -0.724 4.724 17 H 0.116 0.884 18 C -0.171 4.171 19 N -0.533 5.533 20 Si 0.820 3.180 21 H -0.190 1.190 22 H -0.187 1.187 23 H -0.190 1.190 24 N -0.247 5.247 25 C 0.095 3.905 26 H 0.084 0.916 27 H 0.072 0.928 28 H 0.101 0.899 29 H 0.097 0.903 30 H 0.053 0.947 31 H 0.100 0.900 32 H 0.150 0.850 33 H 0.182 0.818 34 H 0.197 0.803 35 H 0.182 0.818 36 H 0.147 0.853 37 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -8.043 -0.600 -23.346 24.700 hybrid contribution 1.451 -0.051 0.262 1.476 sum -6.592 -0.651 -23.083 24.015 Atomic orbital electron populations 1.21650 0.92209 1.02990 1.03078 1.21871 0.98433 0.95096 1.01998 1.22250 0.73618 0.99414 1.05880 1.43895 1.06927 1.65935 1.00140 1.18670 0.87623 1.01208 0.88758 1.20579 1.02735 1.05228 0.86082 1.21522 0.91103 0.94472 1.00935 1.21429 0.98354 1.01205 0.94140 1.20867 0.98101 0.96800 0.92596 1.18508 0.95054 1.10760 0.87311 1.22130 0.91860 1.09562 0.96906 1.73080 1.30048 1.03033 0.95770 1.74316 1.17287 1.20495 1.06780 1.27304 0.88226 0.95291 1.04200 1.83474 1.12435 1.80968 0.81919 1.23660 0.93430 1.59955 0.95325 0.88414 1.26060 1.03654 0.92065 0.95319 1.69991 1.32441 1.45749 1.05168 0.84987 0.76134 0.79606 0.77253 1.19001 1.18748 1.19017 1.68180 1.34958 1.22673 0.98911 1.19430 0.90105 0.92439 0.88542 0.91645 0.92835 0.89881 0.90278 0.94746 0.90034 0.84977 0.81801 0.80347 0.81800 0.85323 0.90613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 9.91 71.98 0.71 -1.23 16 2 C -0.14 -2.63 6.26 30.59 0.19 -2.44 16 3 C 0.11 2.26 5.96 86.38 0.51 2.77 16 4 N -0.47 -14.01 2.81 -512.29 -1.44 -15.44 16 5 C 0.14 3.53 6.77 38.80 0.26 3.80 16 6 C -0.13 -1.81 9.85 22.38 0.22 -1.59 16 7 C -0.06 -0.64 10.01 22.28 0.22 -0.42 16 8 C -0.13 -1.88 10.03 22.27 0.22 -1.66 16 9 C -0.06 -1.51 10.09 22.43 0.23 -1.28 16 10 C -0.11 -3.46 6.35 -20.13 -0.13 -3.59 16 11 C -0.05 -1.99 7.61 42.09 0.32 -1.67 16 12 N -0.17 -8.29 11.67 -48.43 -0.57 -8.86 16 13 N -0.33 -18.09 9.61 -58.24 -0.56 -18.65 16 14 C 0.22 11.84 7.89 180.27 1.42 13.26 16 15 S 0.17 9.55 21.84 -56.49 -1.23 8.32 16 16 C -0.58 -33.99 9.25 67.95 0.63 -33.36 16 17 H 0.10 5.93 6.51 -2.91 -0.02 5.91 16 18 C 0.04 2.03 5.49 84.86 0.47 2.50 16 19 N -0.90 -51.42 13.22 21.64 0.29 -51.13 16 20 Si 1.00 44.17 29.55 68.60 2.03 46.20 16 21 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 22 H -0.26 -10.74 7.11 99.48 0.71 -10.04 16 23 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 24 N -0.51 -24.42 10.53 -193.44 -2.04 -26.46 16 25 C 0.35 14.49 7.87 133.95 1.05 15.54 16 26 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.05 0.82 8.14 -2.38 -0.02 0.80 16 28 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.03 0.92 8.14 -2.38 -0.02 0.90 16 31 H 0.08 1.98 8.13 -2.39 -0.02 1.96 16 32 H 0.13 1.62 7.90 -2.38 -0.02 1.60 16 33 H 0.16 1.19 7.91 -2.91 -0.02 1.16 16 34 H 0.18 0.34 8.06 -2.91 -0.02 0.32 16 35 H 0.16 1.23 8.06 -2.91 -0.02 1.20 16 36 H 0.13 3.03 8.06 -2.91 -0.02 3.00 16 37 H 0.28 14.92 8.31 -92.70 -0.77 14.15 16 Total: -1.00 -77.15 337.54 3.92 -73.23 By element: Atomic # 1 Polarization: 1.07 SS G_CDS: 1.10 Total: 2.17 kcal Atomic # 6 Polarization: -15.71 SS G_CDS: 6.34 Total: -9.37 kcal Atomic # 7 Polarization: -116.24 SS G_CDS: -4.31 Total: -120.55 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Atomic # 16 Polarization: 9.55 SS G_CDS: -1.23 Total: 8.32 kcal Total: -77.15 3.92 -73.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000046585194.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.228 kcal (2) G-P(sol) polarization free energy of solvation -77.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.232 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds